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MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering

Author(s): Kim Eun-Youn | Kim Seon-Young | Ashlock Daniel | Nam Dougu
Unexplained neurological events during bathing in young people: Possible association with the use of gas geysers

Author(s): Singh Prabhjeet | Lamba Anuraag | Bansal Rajinder | Singh Gagandeep
Inhibition of HMG CoA reductase reveals an unexpected role for cholesterol during PGC migration in the mouse

Author(s): Ding Jiaxi | Jiang DeChen | Kurczy Michael | Nalepka Jennifer | Dudley Brian | Merkel Erin | Porter Forbes | Ewing Andrew | Winograd Nicholas | Burgess James | Molyneaux Kathleen
Bridging the Semantic Gap for Texture-based Image Retrieval and Navigation

Author(s): Najlae Idrissi | José Martinez | Driss Aboutajdine
caBIG™ VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data

Author(s): Zhu Yitan | Li Huai | Miller David | Wang Zuyi | Xuan Jianhua | Clarke Robert | Hoffman Eric | Wang Yue
Cancer incidence in men: a cluster analysis of spatial patterns

Author(s): Cassetti Tiziana | La Rosa Francesco | Rossi Luca | D'Alò Daniela | Stracci Fabrizio
Development and mapping of Simple Sequence Repeat markers for pearl millet from data mining of Expressed Sequence Tags

Author(s): Senthilvel S | Jayashree B | Mahalakshmi V | Kumar P Sathish | Nakka S | Nepolean T | Hash CT
Susceptibility to intestinal infection and diarrhoea in Zambian adults in relation to HIV status and CD4 count

Author(s): Kelly Paul | Todd Jim | Sianongo Sandie | Mwansa James | Sinsungwe Henry | Katubulushi Max | Farthing Michael | Feldman Roger
Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes

Author(s): Maulik Ujjwal | Mukhopadhyay Anirban | Bandyopadhyay Sanghamitra
Protein domain organisation: adding order

Author(s): Kummerfeld Sarah | Teichmann Sarah
Analysis of the real EADGENE data set: Multivariate approaches and post analysis (Open Access publication)

Author(s): Sørensen Peter | Bonnet Agnès | Buitenhuis Bart | Closset Rodrigue | Déjean Sébastien | Delmas Céline | Duval Mylène | Glass Liz | Hedegaard Jakob | Hornshøj Henrik | Hulsegge Ina | Jaffrézic Florence | Jensen Kirsty | Jiang Li | de Koning Dirk-Jan | Cao Kim-Anh | Nie Haisheng | Petzl Wolfram | Pool Marco | Robert-Granié Christèle | San Cristobal Magali | Lund Mogens | van Schothorst Evert | Schuberth Hans-Joachim | Seyfert Hans-Martin | Tosser-Klopp Gwenola | Waddington David | Watson Michael | Yang Wei | Zerbe Holm
Analyzing miRNA co-expression networks to explore TF-miRNA regulation

Author(s): Bandyopadhyay Sanghamitra | Bhattacharyya Malay
Functional assessment of time course microarray data

Author(s): Nueda María | Sebastián Patricia | Tarazona Sonia | García-García Francisco | Dopazo Joaquín | Ferrer Alberto | Conesa Ana
Neuroligin1: a cell adhesion molecule that recruits PSD-95 and NMDA receptors by distinct mechanisms during synaptogenesis

Author(s): Barrow Stephanie | Constable John | Clark Eliana | El-Sabeawy Faten | McAllister A Kimberley | Washbourne Philip
A climatology of surface ozone in the extra tropics: cluster analysis of observations and model results

Author(s): O. A. Tarasova | C. A. M. Brenninkmeijer | P. Jöckel | A. M. Zvyagintsev | G. I. Kuznetsov
Representativeness and climatology of carbon monoxide and ozone at the global GAW station Mt. Kenya in equatorial Africa

Author(s): S. Henne | J. Klausen | W. Junkermann | J. M. Kariuki | J. O. Aseyo | B. Buchmann
A climatology of surface ozone in the extra tropics: cluster analysis of observations and model results

Author(s): O. A. Tarasova | C. A. M. Brenninkmeijer | P. Jöckel | A. M. Zvyagintsev | G. I. Kuznetsov
Representativeness and climatology of carbon monoxide and ozone at the global GAW station Mt. Kenya in equatorial Africa

Author(s): S. Henne | J. Klausen | W. Junkermann | J. M. Kariuki | J. O. Aseyo | B. Buchmann
Source-receptor relationships for airborne measurements of CO2, CO and O3 above Siberia: a cluster-based approach

Author(s): J.-D. Paris | A. Stohl | P. Ciais | P. Nédélec | B. D. Belan | M. Y. Arshinov | M. Ramonet
Interactive visualization of clusters in microarray data: an efficient tool for improved metabolic analysis of E. coli

Author(s): Scharl Theresa | Striedner Gerald | Pötschacher Florentina | Leisch Friedrich | Bayer Karl
Clustered microRNAs' coordination in regulating protein-protein interaction network

Author(s): Yuan Xiongying | Liu Changning | Yang Pengcheng | He Shunmin | Liao Qi | Kang Shuli | Zhao Yi
CLEAN: CLustering Enrichment ANalysis

Author(s): Freudenberg Johannes | Joshi Vineet | Hu Zhen | Medvedovic Mario
Exploratory and inferential analysis of gene cluster neighborhood graphs

Author(s): Scharl Theresa | Voglhuber Ingo | Leisch Friedrich
Assessment of parameters describing representativeness of air quality in-situ measurement sites

Author(s): S. Henne | D. Brunner | D. Folini | S. Solberg | J. Klausen | B. Buchmann
Stratification of co-evolving genomic groups using ranked phylogenetic profiles

Author(s): Freilich Shiri | Goldovsky Leon | Gottlieb Assaf | Blanc Eric | Tsoka Sophia | Ouzounis Christos
Arabidopsis gene co-expression network and its functional modules

Author(s): Mao Linyong | Van Hemert John | Dash Sudhansu | Dickerson Julie
Transcription factor site dependencies in human, mouse and rat genomes

Author(s): Tomovic Andrija | Stadler Michael | Oakeley Edward
Role of the Wnt receptor Frizzled-1 in presynaptic differentiation and function

Author(s): Varela-Nallar Lorena | Grabowski Catalina | Alfaro Iván | Alvarez Alejandra | Inestrosa Nibaldo
Allelic diversity and phylogeny of homB, a novel co-virulence marker of Helicobacter pylori

Author(s): Oleastro Mónica | Cordeiro Rita | Ménard Armelle | Yamaoka Yoshio | Queiroz Dulciene | Mégraud Francis | Monteiro Lurdes
Comparison of threshold selection methods for microarray gene co-expression matrices

Author(s): Borate Bhavesh | Chesler Elissa | Langston Michael | Saxton Arnold | Voy Brynn
Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression

Author(s): Sprinzak Einat | Cokus Shawn | Yeates Todd | Eisenberg David | Pellegrini Matteo
Source-receptor relationships for airborne measurements of CO2, CO and O3 above Siberia: a cluster-based approach

Author(s): J.-D. Paris | A. Stohl | P. Ciais | P. Nédélec | B. D. Belan | M. Yu. Arshinov | M. Ramonet
Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments

Author(s): Celton Magalie | Malpertuy Alain | Lelandais Gaëlle | de Brevern Alexandre
The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines

Author(s): Coleman Courtney | Copetti Dario | Cipriani Guido | Hoffmann Sarolta | Kozma Pál | Kovács László | Morgante Michele | Testolin Raffaele | Di Gaspero Gabriele
ICAM-1 Clustering on Endothelial Cells Recruits VCAM-1

Author(s): Jaap D. van Buul | Jos van Rijssel | Floris P. J. van Alphen | Anna-Marieke van Stalborch | Erik P. J. Mul | Peter L. Hordijk
CF-GeNe: Fuzzy Framework for Robust Gene Regulatory Network Inference

Author(s): apadmMuhammad Shoaib B. Sehgal | Iqbal Gondal | Laurence S. Dooley
Guest Editorial

Author(s): Fei Yu | Chin-Chen Chang | Guangxue Yue | Jiexian Zeng | Wen Chen
Editorial

Author(s): Jie-Xian Zeng | Fei Yu | Limin Sun | Mingwen Wang | Guangxue Yue
Coregulation mapping based on individual phenotypic variation in response to virus infection

Author(s): Nudelman German | Ge Yongchao | Hu Jianzhong | Kumar Madhu | Seto Jeremy | Duke Jamie | Kleinstein Steven | Hayot Fernand | Sealfon Stuart | Wetmur James
Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles

Author(s): Monnier Annabelle | Liverani Silvia | Bouvet Régis | Jesson Béline | Smith Jim | Mosser Jean | Corellou Florence | Bouget François-Yves
Assessment of parameters describing representativeness of air quality in-situ measurement sites

Author(s): S. Henne | D. Brunner | D. Folini | S. Solberg | J. Klausen | B. Buchmann
Prediction of CpG-island function: CpG clustering vs. sliding-window methods

Author(s): Hackenberg Michael | Barturen Guillermo | Carpena Pedro | Luque-Escamilla Pedro | Previti Christopher | Oliver José
Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins

Author(s): Marsico Annalisa | Henschel Andreas | Winter Christof | Tuukkanen Anne | Vassilev Boris | Scheubert Kerstin | Schroeder Michael
A semi-parametric Bayesian model for unsupervised differential co-expression analysis

Author(s): Freudenberg Johannes | Sivaganesan Siva | Wagner Michael | Medvedovic Mario
Residential exposure to motor vehicle emissions and the risk of wheezing among 7-8 year-old schoolchildren: a city-wide cross-sectional study in Nicosia, Cyprus

Author(s): Middleton Nicos | Yiallouros Panayiotis | Nicolaou Nicolaos | Kleanthous Savvas | Pipis Spiros | Zeniou Maria | Demokritou Philip | Koutrakis Petros
Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes

Author(s): Yang S Samuel | Xu Wayne | Tesfaye Mesfin | Lamb JoAnn | Jung Hans-Joachim | VandenBosch Kathryn | Vance Carroll | Gronwald John
Drug target identification using gene expression microarray data of Toxoplasma gondii

Author(s): Budhayash Gautam, Pramod Katara, Satendra Singh & Rohit Farmer
Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population

Author(s): Lacape Jean-Marc | Llewellyn Danny | Jacobs John | Arioli Tony | Becker David | Calhoun Steve | Al-Ghazi Yves | Liu Shiming | Palaï Oumarou | Georges Sophie | Giband Marc | de Assunção Henrique | Barroso Paulo | Claverie Michel | Gawryziak Gérard | Jean Janine | Vialle Michèle | Viot Christopher
Comparison of Genetic Diversity Based on Total and Sharp Bands of RAPD Data in Wheat

Author(s): Hossein Ramshini | Mohammad Reza Naghavi | Hoshang Alizadeh
LinkCluE: A MATLAB Package for Link-Based Cluster Ensembles

Author(s): Natthakan Iam-on | Simon Garrett
Generation, analysis and functional annotation of expressed sequence tags from the sheepshead minnow (Cyprinodon variegatus)

Author(s): Pirooznia Mehdi | Pozhitkov Alexander | Perkins Edward | Deng Youping | Brouwer Marius
Analysis of X-ray Structures of Matrix Metalloproteinases via Chaotic Map Clustering

Author(s): Giangreco Ilenia | Nicolotti Orazio | Carotti Angelo | De Carlo Francesco | Gargano Gianfranco | Bellotti Roberto
A CBIR System for Human Brain Magnetic Resonance Image Indexing

Author(s): Mina Rafi Nazari | Emad Fatemizadeh
Desarrollo calorimétrico del proceso de precipitación en aleaciones Cu-Co-Si

Author(s): Donoso, E. | Varschavsky, A. | Díaz, G.
Effect of the Nd content on the structural and photoluminescence properties of silicon-rich silicon dioxide thin films

Author(s): Debieu Olivier | Cardin Julien | Portier Xavier | Gourbilleau Fabrice
Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis

Author(s): Dottorini Tania | Senin Nicola | Mazzoleni Giorgio | Magnusson Kalle | Crisanti Andrea
WordCluster: detecting clusters of DNA words and genomic elements

Author(s): Hackenberg Michael | Carpena Pedro | Bernaola-Galván Pedro | Barturen Guillermo | Alganza Ángel | Oliver José
Referrals to a regional allergy clinic - an eleven year audit

Author(s): Jones Ray | Hewson Paul | Kaminski Edward
Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

Author(s): Cohen David | Bogeat-Triboulot Marie-Béatrice | Tisserant Emilie | Balzergue Sandrine | Martin-Magniette Marie-Laure | Lelandais Gaëlle | Ningre Nathalie | Renou Jean-Pierre | Tamby Jean-Philippe | Le Thiec Didier | Hummel Irène
Phenols in Leaves and Bark of Fagus sylvatica as Determinants of Insect Occurrences

Author(s): Panos V. Petrakis | Kostas Spanos | Alan Feest | Evangelia Daskalakou
Motif-guided sparse decomposition of gene expression data for regulatory module identification

Author(s): Gong Ting | Xuan Jianhua | Chen Li | Riggins Rebecca | Li Huai | Hoffman Eric | Clarke Robert | Wang Yue
A robust measure of correlation between two genes on a microarray

Author(s): Hardin Johanna | Mitani Aya | Hicks Leanne | VanKoten Brian
Automatic image analysis for gene expression patterns of fly embryos

Author(s): Peng Hanchuan | Long Fuhui | Zhou Jie | Leung Garmay | Eisen Michael | Myers Eugene
Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach

Author(s): Magalhães Tiago | Palmer Jessica | Tomancak Pavel | Pollard Katherine
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data

Author(s): Liu Xiangdong | Jessen Walter | Sivaganesan Siva | Aronow Bruce | Medvedovic Mario
Biomarker discovery for colon cancer using a 761 gene RT-PCR assay

Author(s): Clark-Langone Kim | Wu Jenny | Sangli Chithra | Chen Angela | Snable James | Nguyen Anhthu | Hackett James | Baker Joffre | Yothers Greg | Kim Chungyeul | Cronin Maureen
EDISA: extracting biclusters from multiple time-series of gene expression profiles

Author(s): Supper Jochen | Strauch Martin | Wanke Dierk | Harter Klaus | Zell Andreas
Strainer: software for analysis of population variation in community genomic datasets

Author(s): Eppley John | Tyson Gene | Getz Wayne | Banfield Jillian
Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

Author(s): Andersson Claes | Hvidsten Torgeir | Isaksson Anders | Gustafsson Mats | Komorowski Jan
Genetic characterisation of the recent foot-and-mouth disease virus subtype A/IRN/2005

Author(s): Klein Joern | Hussain Manzoor | Ahmad Munir | Normann Preben | Afzal Muhammad | Alexandersen Soren
CD43 signals induce Type One lineage commitment of human CD4+ T cells

Author(s): Ramírez-Pliego Oscar | Escobar-Zárate Diana | Rivera-Martínez Gemma | Cervantes-Badillo Mayte | Esquivel-Guadarrama Fernando | Rosas-Salgado Gabriela | Rosenstein Yvonne | Santana M Angélica
Persistence drives gene clustering in bacterial genomes

Author(s): Fang Gang | Rocha Eduardo | Danchin Antoine
Comparative transcriptomics in Yersinia pestis: a global view of environmental modulation of gene expression

Author(s): Han Yanping | Qiu Jingfu | Guo Zhaobiao | Gao He | Song Yajun | Zhou Dongsheng | Yang Ruifu
Microarray data mining using landmark gene-guided clustering

Author(s): Chopra Pankaj | Kang Jaewoo | Yang Jiong | Cho HyungJun | Kim Heenam | Lee Min-Goo
In silico discovery of transcription regulatory elements in Plasmodium falciparum

Author(s): Young Jason | Johnson Jeffery | Benner Chris | Yan S Frank | Chen Kaisheng | Le Roch Karine | Zhou Yingyao | Winzeler Elizabeth
Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome

Author(s): Mezey Jason | Nuzhdin Sergey | Ye Fangfei | Jones Corbin
Evidence for neuroprotective properties of human umbilical cord blood cells after neuronal hypoxia in vitro

Author(s): Hau Susann | Reich Doreen | Scholz Markus | Naumann Wilfried | Emmrich Frank | Kamprad Manja | Boltze Johannes
Classification of human cancers based on DNA copy number amplification modeling

Author(s): Myllykangas Samuel | Tikka Jarkko | Böhling Tom | Knuutila Sakari | Hollmén Jaakko
Relating gene expression data on two-component systems to functional annotations in Escherichia coli

Author(s): Denton Anne | Wu Jianfei | Townsend Megan | Sule Preeti | Prüß Birgit
Is there a Common Genetic Basis for Autoimmune Diseases?

Author(s): Juan-Manuel Anaya | LuisMiguel Gómez | John Castiblanco
Uptake of long chain fatty acids is regulated by dynamic interaction of FAT/CD36 with cholesterol/sphingolipid enriched microdomains (lipid rafts)

Author(s): Ehehalt Robert | Sparla Richard | Kulaksiz Hasan | Herrmann Thomas | Füllekrug Joachim | Stremmel Wolfgang
Web Page Clustering using Latent Semantic Analysis

Author(s): Lalit A. Patil | S M. Kamalapur | Dhananjay Kanade
Steroids from Poison Hemlock (Conium maculatum L.): A GC-MS analysis

Author(s): Radulović Niko S. | Đorđević Nevenka D.
Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns

Author(s): Gruel Jérémy | LeBorgne Michel | LeMeur Nolwenn | Théret Nathalie
gViz, a novel tool for the visualization of co-expression networks

Author(s): Helaers Raphaël | Bareke Eric | De Meulder Bertrand | Pierre Michael | Depiereux Sophie | Habra Naji | Depiereux Eric
Guest Editorial

Author(s): Tianlong Gu | Shenghui Liu
Guest Editorial

Author(s): Fei Yu | Haiwen Liu | Wenlang Luo | Huojiao He | Chin-Chen Chang
Guest Editorial

Author(s): Dan Zhang | Bale Reddy
Guest Editorial

Author(s): Yun Liu | Fei Yu | Chin-Chen Chang | Dongfeng Yuan | Yiqin Lu
Expression cartography of human tissues using self organizing maps

Author(s): Wirth Henry | Löffler Markus | von Bergen Martin | Binder Hans
A Depression Recognition and Treatment package for families living with Stroke (DepReT-Stroke): study protocol for a randomised controlled trial

Author(s): Gray Richard | Myint Phyo | Elender Frances | Barton Garry | Pfeil Michael | Price Gill | Wyatt Niki | Ravenhill Garth | Thomas Ester | Jagger Jenny | Hursey Amelia | Waterfield Kelly | Hardy Sheila
Selected amino acid mutations in HIV-1 B subtype gp41 are Associated with Specific gp120V3 signatures in the regulation of Co-Receptor usage

Author(s): Dimonte Salvatore | Mercurio Fabio | Svicher Valentina | D'Arrigo Roberta | Perno Carlo-Federico | Ceccherini-Silberstein Francesca
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis

Author(s): Lysenko Artem | Defoin-Platel Michael | Hassani-Pak Keywan | Taubert Jan | Hodgman Charlie | Rawlings Christopher | Saqi Mansoor
Content based Trademark Retrieval by Integrating Shape with Colour and Texture Information

Author(s): Akriti Nigam | Arpit Kumar Garg | R.C. Tripathi
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