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Novel variation associated with species range expansion

Author(s): Buckley James | Bridle Jon | Pomiankowski Andrew
Genome wide exploration of the origin and evolution of amino acids

Author(s): Liu Xiaoxia | Zhang Jingxian | Ni Feng | Dong Xu | Han Bucong | Han Daxiong | Ji Zhiliang | Zhao Yufen
Is Lamarckian evolution relevant to medicine?

Author(s): Handel Adam | Ramagopalan Sreeram
The collapse of gene complement following whole genome duplication

Author(s): Sankoff David | Zheng Chunfang | Zhu Qian
Codon context analysis of Methanocaldococcus jannaschii

Author(s): Verma D.K. | Gokhale M.S.
Successfully resisting a pathogen is rarely costly in Daphnia magna

Author(s): Labbé Pierrick | Vale Pedro | Little Tom
Lineage-specific co-evolution of the Egf receptor/ligand signaling system

Author(s): Laisney Juliette | Braasch Ingo | Walter Ronald | Meierjohann Svenja | Schartl Manfred
Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana

Author(s): Lin Haining | Moghe Gaurav | Ouyang Shu | Iezzoni Amy | Shiu Shin-Han | Gu Xun | Buell C Robin
Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta)

Author(s): Koester Julie | Swalwell Jarred | von Dassow Peter | Armbrust E Virginia
Guest Editorial

Author(s): Qi Luo | Ben K. M. Sim
Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses

Author(s): Briddon Rob | Patil Basavaprabhu | Bagewadi Basavaraj | Nawaz-ul-Rehman Muhammad | Fauquet Claude
Evolution of the interaction between Runx2 and VDR, two transcription factors involved in osteoblastogenesis

Author(s): Marcellini Sylvain | Bruna Carola | Henríquez Juan | Albistur Miguel | Reyes Ariel | Barriga Elias | Henríquez Berta | Montecino Martín
Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions

Author(s): Katarina Ihrmark | Nashwan Asmail | Wimal Ubhayasekera | Petter Melin | Jan Stenlid | Magnus Karlsson
Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach

Author(s): Rivera Ajna | Pankey M Sabrina | Plachetzki David | Villacorta Carlos | Syme Anna | Serb Jeanne | Omilian Angela | Oakley Todd
The gene transformer-2 of Anastrepha fruit flies (Diptera, Tephritidae) and its evolution in insects

Author(s): Sarno Francesca | Ruiz María | Eirín-López José | Perondini André | Selivon Denise | Sánchez Lucas
Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins

Author(s): Marsico Annalisa | Henschel Andreas | Winter Christof | Tuukkanen Anne | Vassilev Boris | Scheubert Kerstin | Schroeder Michael
The transcription factor Krüppel homolog 1 is linked to hormone mediated social organization in bees

Author(s): Shpigler Hagai | Patch Harland | Cohen Mira | Fan Yongliang | Grozinger Christina | Bloch Guy
Bootstrap-based Support of HGT Inferred by Maximum Parsimony

Author(s): Park Hyun | Jin Guohua | Nakhleh Luay
Amplified fragment length homoplasy: in silico analysis for model and non-model species

Author(s): Paris Margot | Bonnes Benjamin | Ficetola Gentile | Poncet Bénédicte | Després Laurence
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models

Author(s): Hoffgaard Franziska | Weil Philipp | Hamacher Kay
Pelota interacts with HAX1, EIF3G and SRPX and the resulting protein complexes are associated with the actin cytoskeleton

Author(s): Burnicka-Turek Ozanna | Kata Aleksandra | Buyandelger Byambajav | Ebermann Linda | Kramann Nadine | Burfeind Peter | Hoyer-Fender Sigrid | Engel Wolfgang | Adham Ibrahim
Order without design

Author(s): Kurakin Alexei
Comparative Phylogenetic Analysis of E6 and E7

Author(s): Sangeeta Daf*, Lingaraja Jena, Satish Kumar
Improved xylose and arabinose utilization by an industrial recombinant Saccharomyces cerevisiae strain using evolutionary engineering

Author(s): Garcia Sanchez Rosa | Karhumaa Kaisa | Fonseca César | Sànchez Nogué Violeta | Almeida João | Larsson Christer | Bengtsson Oskar | Bettiga Maurizio | Hahn-Hägerdal Bärbel | Gorwa-Grauslund Marie
Evolution of the CD163 family and its relationship to the bovine gamma delta T cell co-receptor WC1

Author(s): Herzig Carolyn | Waters Ray | Baldwin Cynthia | Telfer Janice
Computing and visually analyzing mutual information in molecular co-evolution

Author(s): Bremm Sebastian | Schreck Tobias | Boba Patrick | Held Stephanie | Hamacher Kay
The impact of single nucleotide polymorphism in monomeric alpha-amylase inhibitor genes from wild emmer wheat, primarily from Israel and Golan

Author(s): Wang Ji-Rui | Wei Yu-Ming | Deng Mei | Nevo Eviatar | Yan Ze-Hong | Zheng You-Liang
Coordination Games on Dynamical Networks

Author(s): Marco Tomassini | Enea Pestelacci
Diversifying selection and functional analysis of interleukin-4 suggests antagonism-driven evolution at receptor-binding interfaces

Author(s): Koyanagi Madoka | Kerns Julie | Chung Linda | Zhang Yan | Brown Scott | Moldoveanu Tudor | Malik Harmit | Bix Mark
Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight

Author(s): Li Qing | Li Lin | Yang Xiaohong | Warburton Marilyn | Bai Guanghong | Dai Jingrui | Li Jiansheng | Yan Jianbing
The C. elegans Hox gene ceh-13 regulates cell migration and fusion in a non-colinear way. Implications for the early evolution of Hox clusters

Author(s): Tihanyi Borbála | Vellai Tibor | Regős Ágnes | Ari Eszter | Müller Fritz | Takács-Vellai Krisztina
Osteopoikilosis and multiple exostoses caused by novel mutations in LEMD3 and EXT1 genes respectively - coincidence within one family

Author(s): Baasanjav Sevjidmaa | Jamsheer Aleksander | Kolanczyk Mateusz | Horn Denise | Latos Tomasz | Hoffmann Katrin | Latos-Bielenska Anna | Mundlos Stefan
Coevolution of Cooperation, Response to Adverse Social Ties and Network Structure

Author(s): Sven Van Segbroeck | Francisco C. Santos | Jorge M. Pacheco | Tom Lenaerts
Self-association of the Lentivirus protein, Nef

Author(s): Kwak Youn Tae | Raney Alexa | Kuo Lillian | Denial Sarah | Temple Brenda | Garcia J Victor | Foster John
Ostrinia revisited: Evidence for sex linkage in European Corn Borer Ostrinia nubilalis (Hubner) pheromone reception

Author(s): Olsson Shannon | Kesevan Subaharan | Groot Astrid | Dekker Teun | Heckel David | Hansson Bill
Diversity of sponge mitochondrial introns revealed by cox 1 sequences of Tetillidae

Author(s): Szitenberg Amir | Rot Chagai | Ilan Micha | Huchon Dorothée
Similarity of molecular phenotype between known epilepsy gene LGI1 and disease candidate gene LGI2

Author(s): Limviphuvadh Vachiranee | Chua Ling | Rahim Rabi | Eisenhaber Frank | Maurer-Stroh Sebastian | Adhikari Sharmila
Evolution and functional divergence of the anoctamin family of membrane proteins

Author(s): Milenkovic Vladimir | Brockmann Marisa | Stöhr Heidi | Weber Bernhard | Strauss Olaf
Community impacts of anthropogenic disturbance: natural enemies exploit multiple routes in pursuit of invading herbivore hosts

Author(s): Nicholls James | Fuentes-Utrilla Pablo | Hayward Alexander | Melika George | Csóka György | Nieves-Aldrey José-Luis | Pujade-Villar Juli | Tavakoli Majid | Schönrogge Karsten | Stone Graham
Naturalness Consumption and Biodiversity in an Ecoregion of Central Italy

Author(s): Roberto Mancinelli | Enio Campiglia | Vincenzo Di Felice | Fabio Caporali
Naturalness Consumption and Biodiversity in an Ecoregion of Central Italy

Author(s): Roberto Mancinelli | Enio Campiglia | Vincenzo Di Felice | Fabio Caporali
Modeling the evolution of a classic genetic switch

Author(s): Josephides Christos | Moses Alan
Public health interventions for epidemics: implications for multiple infection waves

Author(s): Wessel Lindsay | Hua Yi | Wu Jianhong | Moghadas Seyed
A role for p38 MAPK in the regulation of ciliary motion in a eukaryote

Author(s): Ressurreição Margarida | Rollinson David | Emery Aidan | Walker Anthony
Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes

Author(s): Mower Jeffrey | Stefanović Saša | Hao Weilong | Gummow Julie | Jain Kanika | Ahmed Dana | Palmer Jeffrey
Understanding protein evolutionary rate by integrating gene co-expression with protein interactions

Author(s): Pang Kaifang | Cheng Chao | Xuan Zhenyu | Sheng Huanye | Ma Xiaotu
A novel web-based TinT application and the chronology of the Primate Alu retroposon activity

Author(s): Churakov Gennady | Grundmann Norbert | Kuritzin Andrej | Brosius Jürgen | Makałowski Wojciech | Schmitz Jürgen
Sorting out inherent features of head-to-head gene pairs by evolutionary conservation

Author(s): Chen Yun-Qin | Yu Hui | Li Yi-Xue | Li Yuan-Yuan
Preface, MSM 2011

Author(s): Editor, MSM
Selection on the wing in Heliconius butterflies

Author(s): Legrand Delphine | Stevens Virginie | Baguette Michel
Functional analysis of archaeal MBF1 by complementation studies in yeast

Author(s): Marrero Coto Jeannette | Ehrenhofer-Murray Ann | Pons Tirso | Siebers Bettina
On origin of genetic code and tRNA before translation

Author(s): Rodin Andrei | Szathmáry Eörs | Rodin Sergei
The Evolutionary Innovation of Nutritional Symbioses in Leaf-Cutter Ants

Author(s): Frank O. Aylward | Cameron R. Currie | Garret Suen
LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes

Author(s): Dapeng Wang | Yubin Zhang | Zhonghua Fan | Guiming Liu | Jun Yu
The extinction of Equidae and Proboscidea in South America. A test using Carbon isotope data

Author(s): Prado, J. L. | Alberdi, M. T. | Sánchez, B. | Gómez, G.
MODELING, SIMULATION AND OPTIMIZATION OF FCC DOWNER REACTOR

Author(s): Vijay Kumar Koratiya | Sunil Kumar | Shishir Sinha
First report of multiple lineages of dengue viruses type 1 in Rio de Janeiro, Brazil

Author(s): dos Santos Flavia | Nogueira Fernanda | Castro Márcia | Nunes Priscila | de Filippis Ana Maria | Faria Nieli | Simões Jaqueline | Sampaio Simone | Santos Clarice | Nogueira Rita Maria
Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps

Author(s): Yip Kevin | Utz Lukas | Sitwell Simon | Hu Xihao | Sidhu Sachdev | Turk Benjamin | Gerstein Mark | Kim Philip
Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons

Author(s): Sanchez-Puerta Maria | Abbona Cinthia | Zhuo Shi | Tepe Eric | Bohs Lynn | Olmstead Richard | Palmer Jeffrey
Sex in the PAC: A hidden affair in dark septate endophytes?

Author(s): Zaffarano Pascal | Queloz Valentin | Duò Angelo | Grünig Christoph
A hitchhikers guide to the Galápagos: co-phylogeography of Galápagos mockingbirds and their parasites

Author(s): Štefka Jan | Hoeck Paquita | Keller Lukas | Smith Vincent
An in vitro co-culture model of esophageal cells identifies ascorbic acid as a modulator of cell competition

Author(s): Merlo Lauren | Kosoff Rachelle | Gardiner Kristin | Maley Carlo
Probable presence of an ubiquitous cryptic mitochondrial gene on the antisense strand of the cytochrome oxidase I gene

Author(s): Faure Eric | Delaye Luis | Tribolo Sandra | Levasseur Anthony | Seligmann Hervé | Barthélémy Roxane-Marie
Evolution of ultraviolet vision in the largest avian radiation - the passerines

Author(s): Ödeen Anders | Håstad Olle | Alström Per
Evolution and Quantitative Comparison of Genome-Wide Protein Domain Distributions

Author(s): Arli A. Parikesit | Peter F. Stadler | Sonja J. Prohaska
Molecular Pathology of 6 Novel GJB2 Allelic Variants Detected in Familial and Sporadic Iranian Non Syndromic Hearing Loss Cases

Author(s): M Hashemzadeh Chaleshtori | DD Farhud | AH Crosby | E Farrokhi | H Pour Jafari | K Ghatreh Samani | K Safa Chaleshtori | M Kasiri | M Shahrani | GR Mobini | M Mansouri | D Modarresinia | M Jafari
A Novel Differential Evolution with Co-evolution Strategy

Author(s): Wei-Ping Lee | Wan-Jou Chien
Guest Editorial

Author(s): Fan Zhai | Homer Chen | Thomas Stockhammer | Touradj Ebrahimi
On the alleged origin of geminiviruses from extrachromosomal DNAs of phytoplasmas

Author(s): Saccardo Federica | Cettul Emanuele | Palmano Sabrina | Noris Emanuela | Firrao Giuseppe
Tracking the evolutionary history of Cortinarius species in section Calochroi, with transoceanic disjunct distributions

Author(s): Garnica Sigisfredo | Spahn Philipp | Oertel Bernhard | Ammirati Joseph | Oberwinkler Franz
Biotechnological approaches to determine the impact of viruses in the energy crop plant Jatropha curcas

Author(s): Ramkat Rose | Calari Alberto | Maghuly Fatemeh | Laimer Margit
Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping

Author(s): Li Dawei | Cuevas Hugo | Yang Luming | Li Yuhong | Garcia-Mas Jordi | Zalapa Juan | Staub Jack | Luan Feishi | Reddy Umesh | He Xiaoming | Gong Zhenhui | Weng Yiqun
Functional co-evolutionary study of glucosamine-6-phosphate synthase in mycoses causing fungi

Author(s): Kamalika Banerjee | Sanjay Gupta | Sanjeev Kumar Sharma | Utkarsh Gupta | Chakresh Kumar Jain*
Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins

Author(s): Ainali Chrysanthi | Simon Michelle | Freilich Shiri | Espinosa Octavio | Hazelwood Lee | Tsoka Sophia | Ouzounis Christos | Hancock John
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

Author(s): Straub Shannon | Fishbein Mark | Livshultz Tatyana | Foster Zachary | Parks Matthew | Weitemier Kevin | Cronn Richard | Liston Aaron
Evolutionary genomics of the pandemic 2009 H1N1 influenza viruses (pH1N 1v)

Author(s): Qu Yanhua | Zhang Ruiying | Cui Peng | Song Gang | Duan Ziyuan | Lei Fumin
Molecular evolution of the vertebrate TLR1 gene family - a complex history of gene duplication, gene conversion, positive selection and co-evolution

Author(s): Huang Yinhua | Temperley Nicholas | Ren Liming | Smith Jacqueline | Li Ning | Burt David
Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs

Author(s): Liu Zhongyang | Liu Qijun | Sun Hanchang | Hou Lin | Guo Hao | Zhu Yunping | Li Dong | He Fuchu
Does thermoregulatory behavior maximize reproductive fitness of natural isolates of Caenorhabditis elegans?

Author(s): Anderson Jennifer | Albergotti Lori | Ellebracht Barbara | Huey Raymond | Phillips Patrick
A mutation degree model for the identification of transcriptional regulatory elements

Author(s): Zhang Changqing | Wang Jin | Hua Xu | Fang Jinggui | Zhu Huaiqiu | Gao Xiang
Reconstructing genetic mating systems in the absence of parental information in colonially breeding waterbirds

Author(s): Miño Carolina | Russello Michael | Mussi Gonçalves Priscila | Del Lama Silvia
PINAT1.0: Protein interaction network analysis tool

Author(s): Sandeep K. Kushwaha | Madhvi Shakya
Patterns of Speciation and Adaptive Radiation in Parnassius Butterflies

Author(s): C. Rebourg | F. Petenian | E. Cosson | E. Faure
EXUDATE-GATHERING ANTS (HYMENOPTERA; FORMICIDAE) AT THREE DIFFERENT LIQUID FOOD REWARDS

Author(s): Liliana M. BUFFA | Pedro JAUREGUIBERRY | Miguel Angel DELFINO
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