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Search Articles for "Genome Stability"

Comparison of genome stability in two pig breeds by using the sister chromatid exchange (SCE) test

Author(s): V. Peretti | F. Ciotola | G.P. Di Meo | A. Perucatti | L. Iannuzzi | V. Barbieri
An overview of Cdk1-controlled targets and processes

Author(s): Enserink Jorrit | Kolodner Richard
HBV replication is significantly reduced by IL-6

Author(s): Kuo Tzer-Min | Hu Cheng-po | Chen Ya-Ling | Hong Ming-Hsiang | Jeng King-Song | Liang Chun-Chin | Chen Mong-Liang | Chang Chungming
The influence of gene transfer on the lactic acid bacteria evolution

Author(s): Višnja Bačun-Družina | Jasna Mrvčić | Ana Butorac | Krešimir Gjuračić
Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome

Author(s): Tremblay Deanna | Alexander Graham | Moseley Shawn | Chadwick Brian
In silico and in vitro comparative analysis to select, validate and test SNPs for human identification

Author(s): Giardina Emiliano | Pietrangeli Ilenia | Martone Claudia | Asili Paola | Predazzi Irene | Marsala Patrizio | Gabriele Luciano | Pipolo Claudio | Ricci Omero | Solla Gianluca | Sineo Luca | Spinella Aldo | Novelli Giuseppe
PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals

Author(s): Belew Ashton | Hepler Nicholas | Jacobs Jonathan | Dinman Jonathan
Identification and analysis of putative promoter motifs in Flavivirus genome

Author(s): Pallavi Somvanshi | Vijai Singh | P. K. Seth
mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle

Author(s): Soranzo Nicola | Zampieri Mattia | Farina Lorenzo | Altafini Claudio
Bayes factors for detection of Quantitative Trait Loci

Author(s): Varona Luis | García-Cortés Luis | Pérez-Enciso Miguel
Chromosome fragility in Freemartin cattle

Author(s): F. Ciotola | V. Peretti | S. Albarella | R. Buonerba | G. Beneduce | G. P. Di Meo | L. Iannuzzi | V. Barbieri
SUMO-1 possesses DNA binding activity

Author(s): Eilebrecht Sebastian | Smet-Nocca Caroline | Wieruszeski Jean-Michel | Benecke Arndt
Replication and transcription of human papillomavirus type 58 genome in Saccharomyces cerevisiae

Author(s): Li Jing | Wang Xiao | Liu Juan | Wang Hong | Zhang Xiao-Li | Tang Wei | Sun Yun-Dong | Wang Xin | Yu Xiu-Ping | Zhao Wei-Ming
Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus

Author(s): Le Bail Aude | Dittami Simon | de Franco Pierre-Olivier | Rousvoal Sylvie | Cock Mark | Tonon Thierry | Charrier Bénédicte
Evolutionary analysis of the highly dynamic CHEK2 duplicon in anthropoids

Author(s): Münch Claudia | Kirsch Stefan | Fernandes António | Schempp Werner
A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)

Author(s): Ralph Steven | Chun Hye | Kolosova Natalia | Cooper Dawn | Oddy Claire | Ritland Carol | Kirkpatrick Robert | Moore Richard | Barber Sarah | Holt Robert | Jones Steven | Marra Marco | Douglas Carl | Ritland Kermit | Bohlmann Jörg
Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR

Author(s): Hong Shin-Young | Seo Pil | Yang Moon-Sik | Xiang Fengning | Park Chung-Mo
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs

Author(s): Chaivorapol Christina | Melton Collin | Wei Grace | Yeh Ru-Fang | Ramalho-Santos Miguel | Blelloch Robert | Li Hao
Metabolic engineering of a reduced-genome strain of Escherichia coli for L-threonine production

Author(s): Lee Jun | Sung Bong | Kim Mi | Blattner Frederick | Yoon Byoung | Kim Jung | Kim Sun
Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration

Author(s): Monaghan James | Epp Leonard | Putta Srikrishna | Page Robert | Walker John | Beachy Chris | Zhu Wei | Pao Gerald | Verma Inder | Hunter Tony | Bryant Susan | Gardiner David | Harkins Tim | Voss S Randal
On reliable discovery of molecular signatures

Author(s): Nilsson Roland | Björkegren Johan | Tegnér Jesper
Evolution of MIR168 paralogs in Brassicaceae

Author(s): Gazzani Silvia | Li Mingai | Maistri Silvia | Scarponi Eliana | Graziola Michele | Barbaro Enrico | Wunder Jörg | Furini Antonella | Saedler Heinz | Varotto Claudio
A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes

Author(s): Fraser Lena | Tsang Gianna | Datson Paul | De Silva H Nihal | Harvey Catherine | Gill Geoffrey | Crowhurst Ross | McNeilage Mark
An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes

Author(s): Bertioli David | Moretzsohn Marcio | Madsen Lene | Sandal Niels | Leal-Bertioli Soraya | Guimarães Patricia | Hougaard Birgit | Fredslund Jakob | Schauser Leif | Nielsen Anna | Sato Shusei | Tabata Satoshi | Cannon Steven | Stougaard Jens
Plant origin and ploidy influence gene expression and life cycle characteristics in an invasive weed

Author(s): Broz Amanda | Manter Daniel | Bowman Gillianne | Müller-Schärer Heinz | Vivanco Jorge
Properties and use of novel replication-competent vectors based on Semliki Forest virus

Author(s): Rausalu Kai | Iofik Anna | Ülper Liane | Karo-Astover Liis | Lulla Valeria | Merits Andres
RNF168, a new RING finger, MIU-containing protein that modifies chromatin by ubiquitination of histones H2A and H2AX

Author(s): Pinato Sabrina | Scandiuzzi Cristina | Arnaudo Nadia | Citterio Elisabetta | Gaudino Giovanni | Penengo Lorenza
An improved method for genome wide DNA methylation profiling correlated to transcription and genomic instability in two breast cancer cell lines

Author(s): Li Jian | Gao Fei | Li Ning | Li Shengting | Yin Guangliang | Tian Geng | Jia Shangang | Wang Kai | Zhang Xiuqing | Yang Huanming | Nielsen Anders | Bolund Lars
M-protein and other intrinsic virulence factors of Streptococcus pyogenes are encoded on an ancient pathogenicity island

Author(s): Panchaud Alexandre | Guy Lionel | Collyn François | Haenni Marisa | Nakata Masanobu | Podbielski Andreas | Moreillon Philippe | Roten Claude-Alain
Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice

Author(s): Ngezahayo Frédéric | Xu Chunming | Wang Hongyan | Jiang Lily | Pang Jinsong | Liu Bao
RNA Relics and Origin of Life

Author(s): Jacques Demongeot | Nicolas Glade | Andrés Moreira | Laurent Vial
Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood

Author(s): Stamova Boryana | Apperson Michelle | Walker Wynn | Tian Yingfang | Xu Huichun | Adamczy Peter | Zhan Xinhua | Liu Da-Zhi | Ander Bradley | Liao Isaac | Gregg Jeffrey | Turner Renee | Jickling Glen | Lit Lisa | Sharp Frank
Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes

Author(s): Smargiasso Nicolas | Gabelica Valérie | Damblon Christian | Rosu Frédéric | De Pauw Edwin | Teulade-Fichou Marie-Paule | Rowe J | Claessens Antoine
Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway

Author(s): Lee Sung-Hun | Eldi Preethi | Cho Soo-Young | Rangasamy Danny
Isolation and sequence analysis of the wheat B genome subtelomeric DNA

Author(s): Salina Elena | Sergeeva Ekaterina | Adonina Irina | Shcherban Andrey | Afonnikov Dmitry | Belcram Harry | Huneau Cecile | Chalhoub Boulos
The word landscape of the non-coding segments of the Arabidopsis thaliana genome

Author(s): Lichtenberg Jens | Yilmaz Alper | Welch Joshua | Kurz Kyle | Liang Xiaoyu | Drews Frank | Ecker Klaus | Lee Stephen | Geisler Matt | Grotewold Erich | Welch Lonnie
Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua)

Author(s): Nielsen Einar | Hemmer-Hansen Jakob | Poulsen Nina | Loeschcke Volker | Moen Thomas | Johansen Torild | Mittelholzer Christian | Taranger Geir-Lasse | Ogden Rob | Carvalho Gary
A white-box approach to microarray probe response characterization: the BaFL pipeline

Author(s): Thompson Kevin | Deshmukh Hrishikesh | Solka Jeffrey | Weller Jennifer
Identification of candidates for cyclotide biosynthesis and cyclisation by expressed sequence tag analysis of Oldenlandia affinis

Author(s): Qin Qiaoping | McCallum Emily | Kaas Quentin | Suda Jan | Saska Ivana | Craik David | Mylne Joshua
Distinct, ecotype-specific genome and proteome signatures in the marine cyanobacteria Prochlorococcus

Author(s): Paul Sandip | Dutta Anirban | Bag Sumit | Das Sabyasachi | Dutta Chitra
Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum

Author(s): Hao Lili | Cai Pengfei | Jiang Ning | Wang Heng | Chen Qijun
Phenotypic effects of the circadian gene Cryptochrome 2 on cancer-related pathways

Author(s): Hoffman Aaron | Zheng Tongzhang | Ba Yue | Stevens Richard | Yi Chun-Hui | Leaderer Derek | Zhu Yong
Genome-wide comparison between IL-17 and combined TNF-alpha/IL-17 induced genes in primary murine hepatocytes

Author(s): Sparna Titus | Rétey Julia | Schmich Kathrin | Albrecht Ute | Naumann Katrin | Gretz Norbert | Fischer Hans-Peter | Bode Johannes | Merfort Irmgard
The RNA binding protein HuR differentially regulates unique subsets of mRNAs in estrogen receptor negative and estrogen receptor positive breast cancer

Author(s): Calaluce Robert | Gubin Matthew | Davis J Wade | Magee Joseph | Chen Jing | Kuwano Yuki | Gorospe Myriam | Atasoy Ulus
Evidence for a lineage of virulent bacteriophages that target Campylobacter

Author(s): Timms Andrew | Cambray-Young Joanna | Scott Andrew | Petty Nicola | Connerton Phillippa | Clarke Louise | Seeger Kathy | Quail Mike | Cummings Nicola | Maskell Duncan | Thomson Nicholas | Connerton Ian
The Leishmania amazonensis TRF (TTAGGG repeat-binding factor) homologue binds and co-localizes with telomeres

Author(s): da Silva Marcelo | Perez Arina | da Silveira Rita de Cássia | de Moraes Camila | Siqueira-Neto Jair | Freitas Lucio de | Cano Maria
Isolation and Characterization of a Virulent Bacteriophage AB1 of Acinetobacter baumannii

Author(s): Yang Hongjiang | Liang Li | Lin Shuxiang | Jia Shiru
Comparative analysis of right element mutant lox sites on recombination efficiency in embryonic stem cells

Author(s): Araki Kimi | Okada Yuka | Araki Masatake | Yamamura Ken-ichi
Icelandic Birch Polyploids—The Case of a Perfect Fit in Genome Size

Author(s): K. Anamthawat-Jónsson | Æ. Th. Thórsson | E. M. Temsch | J. Greilhuber
Extension of the PNA world by functionalized PNA monomers eligible candidates for inverse Diels Alder Click Chemistry

Author(s): Manfred Wiessler, Waldemar Waldeck, Ruediger Pipkorn, Christian Kliem, Peter Lorenz, Heinz Fleischhacker, Manuel Hafner, Klaus Braun
Alterations in LMTK2, MSMB and HNF1B gene expression are associated with the development of prostate cancer

Author(s): Harries Lorna | Perry John | McCullagh Paul | Crundwell Malcolm
An algorithm for classifying tumors based on genomic aberrations and selecting representative tumor models

Author(s): Lu Xin | Zhang Ke | Van Sant Charles | Coon John | Semizarov Dimitri
Controlling the Mdm2-Mdmx-p53 Circuit

Author(s): David L. Waning | Jason A. Lehman | Christopher N. Batuello | Lindsey D. Mayo
Generation of human induced pluripotent stem cells by simple transient transfection of plasmid DNA encoding reprogramming factors

Author(s): Si-Tayeb Karim | Noto Fallon | Sepac Ana | Sedlic Filip | Bosnjak Zeljko | Lough John | Duncan Stephen
Predator-induced defences in Daphnia pulex: Selection and evaluation of internal reference genes for gene expression studies with real-time PCR

Author(s): Spanier Katina | Leese Florian | Mayer Christoph | Colbourne John | Gilbert Don | Pfrender Michael | Tollrian Ralph
Constraints to virus infection in Nicotiana benthamiana plants transformed with a potyvirus amplicon

Author(s): Calvo María | Dujovny Gabriela | Lucini Cristina | Ortuño Jesús | Alamillo Josefa | Simón-Mateo Carmen | López-Moya Juan | García Juan
A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

Author(s): Breen James | Wicker Thomas | Kong Xiuying | Zhang Juncheng | Ma Wujun | Paux Etienne | Feuillet Catherine | Appels Rudi | Bellgard Matthew
Molecular genetics: Step by step implementation in maize breeding

Author(s): Konstantinov Kosana | Mladenović-Drinić Snežana
Plant Epigenetics: From genomes to epigenomes

Author(s): Alain RIVAL | Thierry BEULÉ | Frédérique ABERLENC BERTOSSI | James TREGEAR | Estelle JALIGOT
A machine learning pipeline for quantitative phenotype prediction from genotype data

Author(s): Guzzetta Giorgio | Jurman Giuseppe | Furlanello Cesare
High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING library

Author(s): Ishikawa Tomoko | Kamei Yasuhiro | Otozai Shinji | Kim Jinhyong | Sato Ayuko | Kuwahara Yoshikazu | Tanaka Minoru | Deguchi Tomonori | Inohara Hidenori | Tsujimura Tohru | Todo Takeshi
Biological activity of poly(ADP-ribose)polymerase-1

Author(s): Zofia M. Kiliańska | Jolanta Żołnierczyk | Józefa Węsierska-Gądek
ARTEMIS stabilizes the genome and modulates proliferative responses in multipotent mesenchymal cells

Author(s): Maas Sarah | Donghia Nina | Tompkins Kathleen | Foreman Oded | Mills Kevin
Extra-cellular release and blood diffusion of BART viral micro-RNAs produced by EBV-infected nasopharyngeal carcinoma cells

Author(s): Gourzones Claire | Gelin Aurore | Bombik Izabela | Klibi Jihène | Vérillaud Benjamin | Guigay Joël | Lang Philippe | Témam Stéphane | Schneider Véronique | Amiel Corinne | Baconnais Sonia | Jimenez Anne-Sophie | Busson Pierre
Mutation of NIMA-related kinase 1 (NEK1) leads to chromosome instability

Author(s): Chen Yumay | Chen Chi-Fen | Chiang Huai-Chin | Pena Michelle | Polci Rosaria | Wei Randy | Edwards Robert | Hansel Donna | Chen Phang-Lang | Riley Daniel
UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/ genomic level

Author(s): Chen Shu-Hwa | Lo Chen-Zen | Su Sheng-Yao | Kuo Bao-Han | Hsiung Chao | Lin Chung-Yen
Epigenetic states and expression of imprinted genes in human embryonic stem cells

Author(s): Steven Shoei-Lung Li | Sung-Liang Yu | Sher Singh
QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

Author(s): Pelgas Betty | Bousquet Jean | Meirmans Patrick | Ritland Kermit | Isabel Nathalie
A p53-independent role for the MDM2 antagonist Nutlin-3 in DNA damage response initiation

Author(s): Valentine Jane | Kumar Sonia | Moumen Abdeladim
High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology

Author(s): Lijavetzky Diego | Cabezas José | Ibáñez Ana | Rodríguez Virginia | Martínez-Zapater José
A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes

Author(s): Carter Ben | Wu Guanghui | Woodward Martin | Anjum Muna
Comparative genomic analysis and evolution of the T cell receptor loci in the opossum Monodelphis domestica

Author(s): Parra Zuly | Baker Michelle | Hathaway Jennifer | Lopez April | Trujillo Jonathan | Sharp Alana | Miller Robert
Development of an improved Pseudoalteromonas haloplanktis TAC125 strain for recombinant protein secretion at low temperature

Author(s): Parrilli Ermenegilda | De Vizio Daniela | Cirulli Claudia | Tutino Maria
Stability analysis of mixtures of mutagenetic trees

Author(s): Bogojeska Jasmina | Lengauer Thomas | Rahnenführer Jörg
Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta

Author(s): Bolte Kathrin | Kawach Oliver | Prechtl Julia | Gruenheit Nicole | Nyalwidhe Julius | Maier Uwe-G
A regulatable transgene expression system for cultured Plasmodium falciparum parasites

Author(s): Epp Christian | Raskolnikov Dima | Deitsch Kirk
Rapid regulation of protein activity in fission yeast

Author(s): Bøe Cathrine | Garcia Ignacio | Pai Chen-Chun | Sharom Jeffrey | Skjølberg Henriette | Boye Erik | Kearsey Stephen | MacNeill Stuart | Tyers Michael | Grallert Beáta
Stabilization of the genome of the mismatch repair deficient Mycobacterium tuberculosis by context-dependent codon choice

Author(s): Wanner Roger | Güthlein Carolin | Springer Burkhard | Böttger Erik | Ackermann Martin
VSV-G pseudotyping rescues HIV-1 CA mutations that impair core assembly or stability

Author(s): Brun Sonia | Solignat Maxime | Gay Bernard | Bernard Eric | Chaloin Laurent | Fenard David | Devaux Christian | Chazal Nathalie | Briant Laurence
Genetic interaction network of the Saccharomyces cerevisiae type 1 phosphatase Glc7

Author(s): Logan Michael | Nguyen Thao | Szapiel Nicolas | Knockleby James | Por Hanting | Zadworny Megan | Neszt Michael | Harrison Paul | Bussey Howard | Mandato Craig | Vogel Jackie | Lesage Guillaume
Stability of a Long Noncoding Viral RNA Depends on a 9-nt Core Element at the RNA 5' End to Interact with Viral ORF57 and Cellular PABPC1

Author(s): Maria J. Massimelli, Jeong-Gu Kang, Vladimir Majerciak, Shu-Yun Le, David J. Liewehr, Seth M. Steinberg, Zhi-Ming Zheng
Content of Genome-Protective Micronutrients in Selected Fresh and Processed Foods in the Australian State of Victoria

Author(s): Peter Roupas | Michael Fenech | Chakra Wijesundera | Christine Margetts
Content of Genome-Protective Micronutrients in Selected Fresh and Processed Foods in the Australian State of Victoria

Author(s): Peter Roupas | Michael Fenech | Chakra Wijesundera | Christine Margetts
Cervical cancer : Promoter hypermethylation and its reversal

Author(s): Abhimanyu Kumar Jha1,2, Mohsen Nikbakht1, Neena Capalash1 q , Jagdeep Kaur1* q
Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

Author(s): Wu Da-Qiang | Ye Jing | Ou Hong-Yu | Wei Xue | Huang Xianqing | He Ya-Wen | Xu Yuquan
The role of Candida albicans homologous recombination factors Rad54 and Rdh54 in DNA damage sensitivity

Author(s): Hoot Samantha | Zheng Xiuzhong | Potenski Catherine | White Theodore | Klein Hannah
p53 in stem cells

Author(s): Valeriya Solozobova | Christine Blattner
Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera)

Author(s): Cameron Stephen | Yoshizawa Kazunori | Mizukoshi Atsushi | Whiting Michael | Johnson Kevin
Extremophiles: A Novel Source of Industrially Important Enzymes

Author(s): Lokendra Kumar | Gyanendra Awasthi | Balvinder Singh
RBCS1 expression in coffee: Coffea orthologs, Coffea arabica homeologs, and expression variability between genotypes and under drought stress

Author(s): Marraccini Pierre | Freire Luciana | Alves Gabriel | Vieira Natalia | Vinecky Felipe | Elbelt Sonia | Ramos Humberto | Montagnon Christophe | Vieira Luiz | Leroy Thierry | Pot David | Silva Vânia | Rodrigues Gustavo | Andrade Alan
Molecular profile and copy number analysis of sporadic colorectal cancer in Taiwan

Author(s): Lin Chien-Hsing | Lin Jen-Kou | Chang Shih-Ching | Chang Ya-Hui | Chang Hwey-May | Liu Jin-Hwang | Li Ling-Hui | Chen Yuan-Tsong | Tsai Shih-Feng | Chen Wei-Shone
Cell-free synthesis of a functional G protein-coupled receptor complexed with nanometer scale bilayer discs

Author(s): Yang Jian-Ping | Cirico Tatiana | Katzen Federico | Peterson Todd | Kudlicki Wieslaw
c-Myc activates BRCA1 gene expression through distal promoter elements in breast cancer cells

Author(s): Chen Yinghua | Xu Jinhua | Borowicz Stanley | Collins Cindy | Huo Dezheng | Olopade Olufunmilayo
The human RECQ1 helicase is highly expressed in glioblastoma and plays an important role in tumor cell proliferation

Author(s): Mendoza-Maldonado Ramiro | Faoro Valentina | Bajpai Sailesh | Berti Matteo | Odreman Federico | Vindigni Marco | Ius Tamara | Ghasemian Abdollah | Bonin Serena | Skrap Miran | Stanta Giorgio | Vindigni Alessandro
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