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Search Articles for "Horizontal gene transfer"

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Gene transfer: anything goes in plant mitochondria

Author(s): Archibald John | Richards Thomas
The tree of genomes: An empirical comparison of genome-phylogeny reconstruction methods

Author(s): McCann Angela | Cotton James | McInerney James
The influence of gene transfer on the lactic acid bacteria evolution

Author(s): Višnja Bačun-Družina | Jasna Mrvčić | Ana Butorac | Krešimir Gjuračić
Violacein-Producing Collimonas sp. from the Sea Surface Microlayer of Costal Waters in Trøndelag, Norway

Author(s): Sigrid Hakvåg | Espen Fjærvik | Geir Klinkenberg | Sven Even F. Borgos | Kjell D. Josefsen | Trond E. Ellingsen | Sergey B. Zotchev
Horizontal Gene Transfer and Population of Phyllosphere Bacteria on Transgenic and Nontransgenic Cotton

Author(s): ROHANI CINTA BADIA GINTING | ANTONIUS SUWANTO | ARIS TJAHJOLEKSONO
A Phylogenetic Approach for Assigning Function of Hypothetical Proteins in photorhabdus luminescens Subsp. laumondii TT01 Genome

Author(s): Razia M | Karthik Raja R | Padmanaban K | Sivaramakrishnan S | Chellapandi P
Exotic Rickettsiae in Ixodes ricinus: fact or artifact?

Author(s): Tijsse-Klasen Ellen | Fonville Manoj | van Overbeek Leo | Reimerink Johan | Sprong Hein
Advances in biosafety studies on transgenic insect-resistant poplars in China

Author(s): Jianjun Hu | Minsheng Yang | Mengzhu Lu
Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti

Author(s): Klasson Lisa | Kambris Zakaria | Cook Peter | Walker Thomas | Sinkins Steven
Antibiotic Resistance and Integron of Vibrio cholerae Detection from School Street Foods in Jakarta

Author(s): NADIA DEASHINTA | DIANA ELIZABETH WATURANGI | YOGIARA
Vibrio chromosomes share common history

Author(s): Kirkup Benjamin | Chang LeeAnn | Chang Sarah | Gevers Dirk | Polz Martin
Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments

Author(s): Alejandra Moreno-Letelier | Gabriela Olmedo | Luis E. Eguiarte | Leon Martinez-Castilla | Valeria Souza
Development and application of the active surveillance of pathogens microarray to monitor bacterial gene flux

Author(s): Stabler Richard | Dawson Lisa | Oyston Petra | Titball Richard | Wade Jim | Hinds Jason | Witney Adam | Wren Brendan
The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay

Author(s): Hjerde Erik | Lorentzen Marit | Holden Matthew | Seeger Kathy | Paulsen Steinar | Bason Nathalie | Churcher Carol | Harris David | Norbertczak Halina | Quail Michael | Sanders Suzanne | Thurston Scott | Parkhill Julian | Willassen Nils | Thomson Nicholas
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

Author(s): Brilli Matteo | Mengoni Alessio | Fondi Marco | Bazzicalupo Marco | Liò Pietro | Fani Renato
The origins of phagocytosis and eukaryogenesis

Author(s): Yutin Natalya | Wolf Maxim | Wolf Yuri | Koonin Eugene
Evolution and diversity of Rickettsia bacteria

Author(s): Weinert Lucy | Werren John | Aebi Alexandre | Stone Graham | Jiggins Francis
A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

Author(s): Emiliani Giovanni | Fondi Marco | Fani Renato | Gribaldo Simonetta
Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14

Author(s): Ding Feng | Tang Petrus | Hsu Mei-Hua | Cui Peng | Hu Songnian | Yu Jun | Chiu Cheng-Hsun
A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment

Author(s): Tzahor Shani | Man-Aharonovich Dikla | Kirkup Benjamin | Yogev Tali | Berman-Frank Ilana | Polz Martin | Béjà Oded | Mandel-Gutfreund Yael
Genomic island excisions in Bordetella petrii

Author(s): Lechner Melanie | Schmitt Karin | Bauer Susanne | Hot David | Hubans Christine | Levillain Erwan | Locht Camille | Lemoine Yves | Gross Roy
Retention of the virus-derived sequences in the nuclear genome of grapevine as a potential pathway to virus resistance

Author(s): Bertsch Christophe | Beuve Monique | Dolja Valerian | Wirth Marion | Pelsy Frédérique | Herrbach Etienne | Lemaire Olivier
Phylogenetic detection of horizontal gene transfer during the step-wise genesis of Mycobacterium tuberculosis

Author(s): Veyrier Frédéric | Pletzer Daniel | Turenne Christine | Behr Marcel
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4

Author(s): Chen Ke | Roberts Elijah | Luthey-Schulten Zaida
Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history?

Author(s): Rodriguez Flor | Wu Feinan | Ané Cécile | Tanksley Steve | Spooner David
Reticulate Evolution and Marine Organisms: The Final Frontier?

Author(s): Michael L. Arnold | Nicole D. Fogarty
Pepsin homologues in bacteria

Author(s): Rawlings Neil | Bateman Alex
Pherotypes are driving genetic differentiation within Streptococcus pneumoniae

Author(s): Carrolo Margarida | Pinto Francisco | Melo-Cristino Jose | Ramirez Mario
Adding to Yersinia enterocolitica Gene Pool Diversity: Two Cryptic Plasmids from a Biotype 1A Isolate

Author(s): Daniela Lepka | Tobias Kerrinnes | Evelyn Skiebe | Birgitt Hahn | Angelika Fruth | Gottfried Wilharm
Classification of Myoviridae bacteriophages using protein sequence similarity

Author(s): Lavigne Rob | Darius Paul | Summer Elizabeth | Seto Donald | Mahadevan Padmanabhan | Nilsson Anders | Ackermann Hans | Kropinski Andrew
Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5

Author(s): Bertalan Marcelo | Albano Rodolpho | de Pádua Vânia | Rouws Luc | Rojas Cristian | Hemerly Adriana | Teixeira Kátia | Schwab Stefan | Araujo Jean | Oliveira André | França Leonardo | Magalhães Viviane | Alquéres Sylvia | Cardoso Alexander | Almeida Wellington | Loureiro Marcio | Nogueira Eduardo | Cidade Daniela | Oliveira Denise | Simão Tatiana | Macedo Jacyara | Valadão Ana | Dreschsel Marcela | Freitas Flávia | Vidal Marcia | Guedes Helma | Rodrigues Elisete | Meneses Carlos | Brioso Paulo | Pozzer Luciana | Figueiredo Daniel | Montano Helena | Junior Jadier | de Souza Filho Gonçalo | Martin Quintana Flores Victor | Ferreira Beatriz | Branco Alan | Gonzalez Paula | Guillobel Heloisa | Lemos Melissa | Seibel Luiz | Macedo José | Alves-Ferreira Marcio | Sachetto-Martins Gilberto | Coelho Ana | Santos Eidy | Amaral Gilda | Neves Anna | Pacheco Ana | Carvalho Daniela | Lery Letícia | Bisch Paulo | Rössle Shaila | Ürményi Turán | Rael Pereira Alessandra | Silva Rosane | Rondinelli Edson | von Krüger Wanda | Martins Orlando | Baldani José | Ferreira Paulo
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains

Author(s): Hill Karen | Xie Gary | Foley Brian | Smith Theresa | Munk Amy | Bruce David | Smith Leonard | Brettin Thomas | Detter John
Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon

Author(s): Castillo-Ramírez Santiago | Vázquez-Castellanos Jorge | González Víctor | Cevallos Miguel
Is evolution Darwinian or/and Lamarckian?

Author(s): Koonin Eugene | Wolf Yuri
SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees

Author(s): Hill Tobias | Nordström Karl | Thollesson Mikael | Säfström Tommy | Vernersson Andreas | Fredriksson Robert | Schiöth Helgi
Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

Author(s): Carvalho Fabíola | Souza Rangel | Barcellos Fernando | Hungria Mariangela | Vasconcelos Ana
Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity

Author(s): Nouvel Laurent | Sirand-Pugnet Pascal | Marenda Marc | Sagné Eveline | Barbe Valérie | Mangenot Sophie | Schenowitz Chantal | Jacob Daniel | Barré Aurélien | Claverol Stéphane | Blanchard Alain | Citti Christine
Legionella pneumophila pangenome reveals strain-specific virulence factors

Author(s): D'Auria Giuseppe | Jiménez-Hernández Nuria | Peris-Bondia Francesc | Moya Andrés | Latorre Amparo
Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

Author(s): Fondi Marco | Bacci Giovanni | Brilli Matteo | Papaleo Maria | Mengoni Alessio | Vaneechoutte Mario | Dijkshoorn Lenie | Fani Renato
Accelerated microevolution in an outer membrane protein (OMP) of the intracellular bacteria Wolbachia

Author(s): Baldo Laura | Desjardins Christopher | Russell Jacob | Stahlhut Julie | Werren John
Characterization of metal and antibiotic resistance in a bacterial population isolated from a Copper mining industry

Author(s): pankaj kumar jain | S Ramachandran | vibhava shukla | deepti bhakuni | sanjay kumar verma
High prevalence of plasmid-mediated 16S rRNA methylase gene rmtB among Escherichia coli clinical isolates from a Chinese teaching hospital

Author(s): Yu Fang-you | Yao Dan | Pan Jing-ye | Chen Chong | Qin Zhi-qiang | Parsons Chris | Yang Le-he | Li Qiao-qiao | Zhang Xue-qing | Qu Di | Wang Liang-xing
Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8

Author(s): Farnbacher Max | Jahns Thomas | Willrodt Dirk | Daniel Rolf | Haas Rainer | Goesmann Alexander | Kurtz Stefan | Rieder Gabriele
Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae

Author(s): Haley Bradd | Grim Christopher | Hasan Nur | Choi Seon-Young | Chun Jongsik | Brettin Thomas | Bruce David | Challacombe Jean | Detter J Chris | Han Cliff | Huq Anwar | Colwell Rita
A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes

Author(s): Röske Kerstin | Foecking Mark | Yooseph Shibu | Glass John | Calcutt Michael | Wise Kim
A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum

Author(s): Minge Marianne | Shalchian-Tabrizi Kamran | Tørresen Ole | Takishita Kiyotaka | Probert Ian | Inagaki Yuji | Klaveness Dag | Jakobsen Kjetill
Analysis and comparison of the pan-genomic properties of sixteen well-characterized bacterial genera

Author(s): Trost Brett | Haakensen Monique | Pittet Vanessa | Ziola Barry | Kusalik Anthony
Diversity of sponge mitochondrial introns revealed by cox 1 sequences of Tetillidae

Author(s): Szitenberg Amir | Rot Chagai | Ilan Micha | Huchon Dorothée
Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex

Author(s): Lynch Karlene | Stothard Paul | Dennis Jonathan
High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis

Author(s): Friedrich Torben | Rahmann Sven | Weigel Wilfried | Rabsch Wolfgang | Fruth Angelika | Ron Eliora | Gunzer Florian | Dandekar Thomas | Hacker Jörg | Müller Tobias | Dobrindt Ulrich
Gene gain and loss events in Rickettsia and Orientia species

Author(s): Georgiades Kalliopi | Merhej Vicky | El Karkouri Khalid | Raoult Didier | Pontarotti Pierre
Molecular adaptation of a plant-bacterium outer membrane protease towards plague virulence factor Pla

Author(s): Haiko Johanna | Laakkonen Liisa | Westerlund-Wikström Benita | Korhonen Timo
Structural correlations in bacterial metabolic networks

Author(s): Bernhardsson Sebastian | Gerlee Philip | Lizana Ludvig
Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover

Author(s): Mayer Werner | Schuster Lisa | Bartelmes Gabi | Dieterich Christoph | Sommer Ralf
Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS)

Author(s): Shimomura Yumi | Okumura Kayo | Murayama Somay | Yagi Junji | Ubukata Kimiko | Kirikae Teruo | Miyoshi-Akiyama Tohru
Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942

Author(s): Delaye Luis | González-Domenech Carmen | Garcillán-Barcia María | Peretó Juli | de la Cruz Fernando | Moya Andrés
Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes

Author(s): Mower Jeffrey | Stefanović Saša | Hao Weilong | Gummow Julie | Jain Kanika | Ahmed Dana | Palmer Jeffrey
Quinone-dependent D-lactate dehydrogenase Dld (Cg1027) is essential for growth of Corynebacterium glutamicum on D-lactate

Author(s): Kato Osamu | Youn Jung-Won | Stansen K Corinna | Matsui Daisuke | Oikawa Tadao | Wendisch Volker
Ribonucleotide reduction - horizontal transfer of a required function spans all three domains

Author(s): Lundin Daniel | Gribaldo Simonetta | Torrents Eduard | Sjöberg Britt-Marie | Poole Anthony
S. Typhimurium sseJ gene decreases the S. Typhi cytotoxicity toward cultured epithelial cells

Author(s): Trombert A Nicole | Berrocal Liliana | Fuentes Juan | Mora Guido
iGTP: A software package for large-scale gene tree parsimony analysis

Author(s): Chaudhary Ruchi | Bansal Mukul | Wehe André | Fernández-Baca David | Eulenstein Oliver
Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum

Author(s): Villaseñor Tomás | Brom Susana | Dávalos Araceli | Lozano Luis | Romero David | los Santos Alejandro
Molecular evolution of urea amidolyase and urea carboxylase in fungi

Author(s): Strope Pooja | Nickerson Kenneth | Harris Steven | Moriyama Etsuko
Phenotypic and genotypic variations within a single bacteriophage species

Author(s): Ceyssens Pieter-Jan | Glonti Thea | Kropinski ndrew | Lavigne Rob | Chanishvili Nina | Kulakov Leonid | Lashkhi Nino | Tediashvili Marina | Merabishvili Maya
Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniae invasive isolate

Author(s): Camilli Romina | Bonnal Raoul | Del Grosso Maria | Iacono Michele | Corti Giorgio | Rizzi Ermanno | Marchetti Magda | Mulas Laura | Iannelli Francesco | Superti Fabiana | Oggioni Marco | De Bellis Gianluca | Pantosti Annalisa
Paratransgenic Control of Vector Borne Diseases

Author(s): Ivy Hurwitz, Annabeth Fieck, Amber Read, Heidi Hillesland, Nichole Klein, Angray Kang, Ravi Durvasula
Sex and the origin of genetic exchanges

Author(s): Thierry Lodé
GIST: Genomic island suite of tools for predicting genomic islands

Author(s): Mohammad Shabbir Hasan | Qi Liu | Han Wang | John Fazekas | Bernard Chen | Dongsheng Che
IGIPT - Integrated genomic island prediction tool

Author(s): Ruchi Jain | Sandeep Ramineni | Nita Parekh
The public goods hypothesis for the evolution of life on Earth

Author(s): McInerney James | Pisani Davide | Bapteste Eric | O'Connell Mary
Origin and evolution of gene families in Bacteria and Archaea

Author(s): Collins R | Merz Hugh | Higgs Paul
Fast and accurate methods for phylogenomic analyses

Author(s): Yang Jimmy | Warnow Tandy
Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons

Author(s): Sanchez-Puerta Maria | Abbona Cinthia | Zhuo Shi | Tepe Eric | Bohs Lynn | Olmstead Richard | Palmer Jeffrey
Widespread Horizontal Gene Transfer from Circular Single-stranded DNA Viruses to Eukaryotic Genomes

Author(s): Liu Huiquan | Fu Yanping | Li Bo | Yu Xiao | Xie Jiatao | Cheng Jiasen | Ghabrial Said | Li Guoqing | Yi Xianhong | Jiang Daohong
Mobilisation and remobilisation of a large archetypal pathogenicity island of uropathogenic Escherichia coli in vitro support the role of conjugation for horizontal transfer of genomic islands

Author(s): Schneider György | Dobrindt Ulrich | Middendorf Barbara | Hochhut Bianca | Szijártó Valéria | Emődy Levente | Hacker Jörg
Arcanolysin is a cholesterol-dependent cytolysin of the human pathogen Arcanobacterium haemolyticum

Author(s): Jost B Helen | Lucas Erynn | Billington Stephen | Ratner Adam | McGee David
Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination

Author(s): Acosta José | Eguiarte Luis | Santamaría Rosa | Bustos Patricia | Vinuesa Pablo | Martínez-Romero Esperanza | Dávila Guillermo | González Víctor
Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes

Author(s): Gomez-Valero Laura | Rusniok Christophe | Jarraud Sophie | Vacherie Benoit | Rouy Zoé | Barbe Valerie | Medigue Claudine | Etienne Jerome | Buchrieser Carmen
The UlaG protein family defines novel structural and functional motifs grafted on an ancient RNase fold

Author(s): Fernandez Francisco | Garces Fernando | López-Estepa Miguel | Aguilar Juan | Baldomà Laura | Coll Miquel | Badia Josefa | Vega M Cristina
HGT-Gen: a tool for generating a phylogenetic tree with horizontal gene transfer

Author(s): Tokumasa Horiike * | Daisuke Miyata | Yoshio Tateno | Ryoichi Minai
Effect of mesoporous silica under Neisseria meningitidis transformation process: environmental effects under meningococci transformation

Author(s): Hollanda Luciana | Cury Gisele | Pereira Rafaella | Ferreira Gracielle | Sousa Andreza | Sousa Edesia | Lancellotti Marcelo
On the alleged origin of geminiviruses from extrachromosomal DNAs of phytoplasmas

Author(s): Saccardo Federica | Cettul Emanuele | Palmano Sabrina | Noris Emanuela | Firrao Giuseppe
A horizontal gene transfer supported the evolution of an early metazoan biomineralization strategy

Author(s): Jackson Daniel | Macis Luciana | Reitner Joachim | Wörheide Gert
Production of Bioactive Secondary Metabolites by Marine Vibrionaceae

Author(s): Maria Mansson | Lone Gram | Thomas O. Larsen
Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome

Author(s): Lackner Gerald | Moebius Nadine | Partida-Martinez Laila | Boland Sebastian | Hertweck Christian
Integration Host Factor (IHF) binds to the promoter region of the phtD operon involved in phaseolotoxin synthesis in P. syringae pv. phaseolicola NPS3121

Author(s): Arvizu-Gómez Jackeline | Hernández-Morales Alejandro | Pastor-Palacios Guillermo | Brieba Luis | Álvarez-Morales Ariel
Horizontal gene transfer in silkworm, Bombyx mori

Author(s): Zhu Bo | Lou Miao-Miao | Xie Guan-Lin | Zhang Guo-Qing | Zhou Xue-Ping | Li Bin | Jin Gu-Lei
The evolution of plasmid-carried antibiotic resistance

Author(s): Svara Fabian | Rankin Daniel
BEL/Pao retrotransposons in metazoan genomes

Author(s): de la Chaux Nicole | Wagner Andreas
Interplay of recombination and selection in the genomes of Chlamydia trachomatis

Author(s): Joseph Sandeep | Didelot Xavier | Gandhi Khanjan | Dean Deborah | Read Timothy
Co-cultivation of murine BMDCs with 67NR mouse mammary carcinoma cells give rise to highly drug resistant cells

Author(s): Nagler Christa | Hardt Cornelia | Zänker Kurt | Dittmar Thomas
Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

Author(s): Escobar Juan | Scornavacca Céline | Cenci Alberto | Guilhaumon Claire | Santoni Sylvain | Douzery Emmanuel | Ranwez Vincent | Glémin Sylvain | David Jacques
Differences in lateral gene transfer in hypersaline versus thermal environments

Author(s): Rhodes Matthew | Spear John | Oren Aharon | House Christopher
Evidences of lateral gene transfer between archaea and pathogenic bacteria

Author(s): Habib Bokhari | Maryam Anwar | Hasan Bilal Mirza | Patrick Martin Gillevet
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