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Design and Screening of M13 Phage Display cDNA Libraries

Author(s): Yuliya Georgieva | Zoltán Konthur
SOLiD sequencing of four Vibrio vulnificus genomes enables comparative genomic analysis and identification of candidate clade-specific virulence genes

Author(s): Gulig Paul | Crécy-Lagard Valérie de | Wright Anita | Walts Brandon | Telonis-Scott Marina | McIntyre Lauren
New methods for next generation sequencing based microRNA expression profiling

Author(s): Buermans Henk | Ariyurek Yavuz | van Ommen Gertjan | den Dunnen Johan | 't Hoen Peter
Initial steps towards a production platform for DNA sequence analysis on the grid

Author(s): Luyf Angela | van Schaik Barbera | de Vries Michel | Baas Frank | van Kampen Antoine | Olabarriaga Silvia
NGSQC: cross-platform quality analysis pipeline for deep sequencing data

Author(s): Dai Manhong | Thompson Robert | Maher Christopher | Contreras-Galindo Rafael | Kaplan Mark | Markovitz David | Omenn Gil | Meng Fan
Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data

Author(s): Rouchka Eric | Montoya-Durango Diego E | Stribinskis Vilius | Ramos Kenneth | Kalbfleisch Ted
PPARG: Gene Expression Regulation and Next-Generation Sequencing for Unsolved Issues

Author(s): Valerio Costa | Maria Assunta Gallo | Francesca Letizia | Marianna Aprile | Amelia Casamassimi | Alfredo Ciccodicola
Exome localization of complex disease association signals

Author(s): Lehne Benjamin | Lewis Cathryn | Schlitt Thomas
Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology

Author(s): Hammond Stephanie | Swanberg Jeffrey | Kaplarevic Mihailo | Lee Kelvin
Next-generation sequencing for HLA typing of class I loci

Author(s): Erlich Rachel | Jia Xiaoming | Anderson Scott | Banks Eric | Gao Xiaojiang | Carrington Mary | Gupta Namrata | DePristo Mark | Henn Matthew | Lennon Niall | de Bakker Paul
Detection and reconstruction of tandemly organized de novo copy number variations

Author(s): He Dan | Furlotte Nicholas | Eskin Eleazar
Next-Generation Sequencing

Author(s): Momiao Xiong | Zhongming Zhao | Jonathan Arnold | Fuli Yu
Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method

Author(s): Wu Jin-Ya | Jiang Xiao-Tao | Jiang Yun-Xia | Lu Su-Ying | Zou Fei | Zhou Hong-Wei
Digital gene expression tag profiling of bat digits provides robust candidates contributing to wing formation

Author(s): Wang Zhe | Dong Dong | Ru Binghua | Young Rebecca | Han Naijian | Guo Tingting | Zhang Shuyi
The genetics of breast cancer: risk factors for disease

Author(s): Andrew Collins | Ioannis Politopoulos
Microarray oligonucleotide probe designer: a Web service

Author(s): Viren C Patel | Kajari Mondal | Amol Carl Shetty | et al
The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE

Author(s): Molina Carlos | Zaman-Allah Mainassara | Khan Faheema | Fatnassi Nadia | Horres Ralf | Rotter Björn | Steinhauer Diana | Amenc Laurie | Drevon Jean-Jacques | Winter Peter | Kahl Günter
Removing Noise From Pyrosequenced Amplicons

Author(s): Quince Christopher | Lanzen Anders | Davenport Russell | Turnbaugh Peter
Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

Author(s): You Frank | Huo Naxin | Deal Karin | Gu Yong | Luo Ming-Cheng | McGuire Patrick | Dvorak Jan | Anderson Olin
Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries

Author(s): Kerstens Hindrik | Crooijmans Richard | Dibbits Bert | Vereijken Addie | Okimoto Ron | Groenen Martien
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

Author(s): Mitra Suparna | Rupek Paul | Richter Daniel | Urich Tim | Gilbert Jack | Meyer Folker | Wilke Andreas | Huson Daniel
Strobe sequence design for haplotype assembly

Author(s): Lo Christine | Bashir Ali | Bansal Vikas | Bafna Vineet
Repeat-aware modeling and correction of short read errors

Author(s): Yang Xiao | Aluru Srinivas | Dorman Karin
UMARS: Un-MAppable Reads Solution

Author(s): Li Sung-Chou | Chan Wen-Ching | Lai Chun-Hung | Tsai Kuo-Wang | Hsu Chun-Nan | Jou Yuh-Shan | Chen Hua-Chien | Chen Chun-Hong | Lin Wen-chang
PileLine: a toolbox to handle genome position information in next-generation sequencing studies

Author(s): Glez-Peña Daniel | Gómez-López Gonzalo | Reboiro-Jato Miguel | Fdez-Riverola Florentino | Pisano David
Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Author(s): Liu Shikai | Zhou Zunchun | Lu Jianguo | Sun Fanyue | Wang Shaolin | Liu Hong | Jiang Yanliang | Kucuktas Huseyin | Kaltenboeck Ludmilla | Peatman Eric | Liu Zhanjiang
SAMMate: a GUI tool for processing short read alignments in SAM/BAM format

Author(s): Xu Guorong | Deng Nan | Zhao Zhiyu | Judeh Thair | Flemington Erik | Zhu Dongxiao
454 sequencing reveals extreme complexity of the class II Major Histocompatibility Complex in the collared flycatcher

Author(s): Zagalska-Neubauer Magdalena | Babik Wiesław | Stuglik Michał | Gustafsson Lars | Cichoń Mariusz | Radwan Jacek
The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis

Author(s): Fang Xuefeng | Yoon Jae-Geun | Li Lisha | Yu Wei | Shao Jiaofang | Hua Dasong | Zheng Shu | Hood Leroy | Goodlett David | Foltz Gregory | Lin Biaoyang
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

Author(s): Prosperi Mattia | Prosperi Luciano | Bruselles Alessandro | Abbate Isabella | Rozera Gabriella | Vincenti Donatella | Solmone Maria | Capobianchi Maria | Ulivi Giovanni
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

Author(s): den Bakker Henk | Cummings Craig | Ferreira Vania | Vatta Paolo | Orsi Renato | Degoricija Lovorka | Barker Melissa | Petrauskene Olga | Furtado Manohar | Wiedmann Martin
Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi

Author(s): Subramanian Sankar | Huynen Leon | Millar Craig | Lambert David
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button

Author(s): Swertz Morris | Dijkstra Martijn | Adamusiak Tomasz | van der Velde Joeri | Kanterakis Alexandros | Roos Erik | Lops Joris | Thorisson Gudmundur | Arends Danny | Byelas George | Muilu Juha | Brookes Anthony | de Brock Engbert | Jansen Ritsert | Parkinson Helen
Discovery and characterization of medaka miRNA genes by next generation sequencing platform

Author(s): Li Sung-Chou | Chan Wen-Ching | Ho Meng-Ru | Tsai Kuo-Wang | Hu Ling-Yueh | Lai Chun-Hung | Hsu Chun-Nan | Hwang Pung-Pung | Lin Wen-chang
AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm

Author(s): Kim Jihoon | Patel Kiltesh | Jung Hyunchul | Kuo Winston | Ohno-Machado Lucila
Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

Author(s): Kraus Robert | Kerstens Hindrik | Van Hooft Pim | Crooijmans Richard | Van Der Poel Jan | Elmberg Johan | Vignal Alain | Huang Yinhua | Li Ning | Prins Herbert | Groenen Martien
Transcriptome characterization of the South African abalone Haliotis midae using sequencing-by-synthesis

Author(s): Franchini Paolo | van der Merwe Mathilde | Roodt-Wilding Rouvay
Integrative analysis of next generation sequencing for small non-coding RNAs and transcriptional regulation in Myelodysplastic Syndromes

Author(s): Beck Dominik | Ayers Steve | Wen Jianguo | Brandl Miriam | Pham Tuan | Webb Paul | Chang Chung-Che | Zhou Xiaobo
Bioinformatics Tools and Novel Challenges in Long Non-Coding RNAs (lncRNAs) Functional Analysis

Author(s): Letizia Da Sacco | Antonella Baldassarre | Andrea Masotti
DNA barcoding and its application to marine zooplankton ecology

Author(s): Chaolun Li | Minxiao Wang | Fangping Cheng | Song Sun
Monozygotic twins: genes are not the destiny?

Author(s): Aniruddha Chatterjee* | Ian M Morison
Pyrosequencing as a tool for better understanding of human microbiomes

Author(s): José F. Siqueira | Ashraf F. Fouad | Isabela N. Rôças
Geno viewer, a SAM/BAM viewer tool

Author(s): Miklós Laczik | Edit Tukacs | Béla Uzonyi | Bálint Domokos | Zsolt Doma | Máté Kiss | Attila Horváth | Zoltán Batta | Zsuzsanna Maros-Szabó | Zsolt Török
Geno viewer, a SAM/BAM viewer tool

Author(s): Miklós Laczik | Edit Tukacs | Béla Uzonyi | Bálint Domokos | Zsolt Doma | Máté Kiss | Attila Horváth | Zoltán Batta | Zsuzsanna Maros-Szabó | Zsolt Török
Optimal Robot Arm Movement using Tabu Search Algorithm

Author(s): S. Mobaieen | A. Rabii | B. Mohamady
Microsatellite Development for an Endangered Bream Megalobrama pellegrini (Teleostei, Cyprinidae) Using 454 Sequencing

Author(s): Jinjin Wang | Xiaomu Yu | Kai Zhao | Yaoguang Zhang | Jingou Tong | Zuogang Peng
Anaerobic fungi: Neocallimastigomycota

Author(s): G.W. Griffith | S. Baker | K. Fliegerova | A. Liggenstoffer | M. van der Giezen | K. Voigt | G. Beakes
Genes of Microorganisms: Paving Way to Tailor Next Generation Fungal Disease Resistant Crop Plants

Author(s): Prem L. KASHYAP | Gulzar S. SANGHERA | Shabir H. WANI | Wajida SHAFI | Sudheer KUMAR | Alok K. SRIVASTAVA | Athokpam HARIBHUSHAN | Dilip K. ARORA
Diagnosis of NLRP3 somatic mosaicism in CINCA/NOMID patients using next-generation sequencing

Author(s): Izawa K | Nishikomori R | Tanikaze N | Saito MK | Goldbach-Mansky R | Aksentijevich I | Yasumi T | Kawai T | Nakahata T | Heike T | Ohara O
Rapid whole genome optical mapping of Plasmodium falciparum

Author(s): Riley Matthew | Kirkup Benjamin | Johnson Jake | Lesho Emil | Ockenhouse Christian
Agile parallel bioinformatics workflow management using Pwrake

Author(s): Mishima Hiroyuki | Sasaki Kensaku | Tanaka Masahiro | Tatebe Osamu | Yoshiura Koh-ichiro
diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data

Author(s): Hammesfahr Björn | Odronitz Florian | Hellkamp Marcel | Kollmar Martin
WebMGA: a customizable web server for fast metagenomic sequence analysis

Author(s): Wu Sitao | Zhu Zhengwei | Fu Liming | Niu Beifang | Li Weizhong
Nephele: genotyping via complete composition vectors and MapReduce

Author(s): Colosimo Marc | Peterson Matthew | Mardis Scott | Hirschman Lynette
Significance testing in ridge regression for genetic data

Author(s): Cule Erika | Vineis Paolo | De Iorio Maria
CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

Author(s): Angiuoli Samuel | Matalka Malcolm | Gussman Aaron | Galens Kevin | Vangala Mahesh | Riley David | Arze Cesar | White James | White Owen | Fricke W Florian
The influence of the cage system and colonisation of Salmonella Enteritidis on the microbial gut flora of laying hens studied by T-RFLP and 454 pyrosequencing

Author(s): Nordentoft Steen | Mølbak Lars | Bjerrum Lotte | De Vylder Jantina | Van Immerseel Filip | Pedersen Karl
From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)

Author(s): Haseneyer Grit | Schmutzer Thomas | Seidel Michael | Zhou Ruonan | Mascher Martin | Schön Chris-Carolin | Taudien Stefan | Scholz Uwe | Stein Nils | Mayer Klaus | Bauer Eva
Clinical pharmacogenomic testing of KRAS, BRAF and EGFR mutations by high resolution melting analysis and ultra-deep pyrosequencing

Author(s): Borràs Emma | Jurado Ismael | Hernan Imma | Gamundi María | Dias Miguel | Martí Isabel | Mañé Begoña | Arcusa Àngels | Agúndez José | Blanca Miguel | Carballo Miguel
Analysis of cancer metabolism with high-throughput technologies

Author(s): Markovets Aleksandra | Herman Damir
Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

Author(s): Guo Shaogui | Liu Jingan | Zheng Yi | Huang Mingyun | Zhang Haiying | Gong Guoyi | He Hongju | Ren Yi | Zhong Silin | Fei Zhangjun | Xu Yong
Characterization and development of EST-derived SSR markers in cultivated sweetpotato (Ipomoea batatas)

Author(s): Wang Zhangying | Li Jun | Luo Zhongxia | Huang Lifei | Chen Xinliang | Fang Boping | Li Yujun | Chen Jingyi | Zhang Xiongjian
Sequencing of BAC pools by different next generation sequencing platforms and strategies

Author(s): Taudien Stefan | Steuernagel Burkhard | Ariyadasa Ruvini | Schulte Daniela | Schmutzer Thomas | Groth Marco | Felder Marius | Petzold Andreas | Scholz Uwe | Mayer Klaus | Stein Nils | Platzer Matthias
Chipster: user-friendly analysis software for microarray and other high-throughput data

Author(s): Kallio M Aleksi | Tuimala Jarno | Hupponen Taavi | Klemelä Petri | Gentile Massimiliano | Scheinin Ilari | Koski Mikko | Käki Janne | Korpelainen Eija
Transcriptome map of mouse isochores

Author(s): Arhondakis Stilianos | Frousios Kimon | Iliopoulos Costas | Pissis Solon | Tischler German | Kossida Sophia
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

Author(s): Dugas Diana | Monaco Marcela | Olsen Andrew | Klein Robert | Kumari Sunita | Ware Doreen | Klein Patricia
Applications of Next-Generation Sequencing Technologies to Diagnostic Virology

Author(s): Luisa Barzon | Enrico Lavezzo | Valentina Militello | Stefano Toppo | Giorgio Palù
RNA-Seq for Plant Pathogenic Bacteria

Author(s): Jeffrey A. Kimbrel | Yanming Di | Jason S. Cumbie | Jeff H. Chang
Einfluss von DNA-Variationen auf die koronare Herzerkrankung

Author(s): Drexel H | Mündlein A | Winder T | Loacker S
Next Generation Sequencing Technologies for Insect Virus Discovery

Author(s): Sijun Liu | Diveena Vijayendran | Bryony C. Bonning
A new era in cardiogenetics

Author(s): Giuseppe Limongelli
Guest Editorial

Author(s): Mohammad M. Banat
How gene expression profiles disclose vital processes and immune responses in Mytilus spp.

Author(s): S Domeneghetti | C Manfrin | L Varotto | U Rosani | M Gerdol | G De Moro | A Pallavicini | P Venier
Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

Author(s): Feltus Frank | Saski Christopher | Mockaitis Keithanne | Haiminen Niina | Parida Laxmi | Smith Zachary | Ford James | Staton Margaret | Ficklin Stephen | Blackmon Barbara | Cheng Chun-Huai | Schnell Raymond | Kuhn David | Motamayor Juan-Carlos
Identification of genomic indels and structural variations using split reads

Author(s): Zhang Zhengdong | Du Jiang | Lam Hugo | Abyzov Alex | Urban Alexander | Snyder Michael | Gerstein Mark
An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis

Author(s): Tang Qi | Ma Xiaojun | Mo Changming | Wilson Iain | Song Cai | Zhao Huan | Yang Yanfang | Fu Wei | Qiu Deyou
Inferring causal genomic alterations in breast cancer using gene expression data

Author(s): Tran Linh | Zhang Bin | Zhang Zhan | Zhang Chunsheng | Xie Tao | Lamb John | Dai Hongyue | Schadt Eric | Zhu Jun
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Author(s): Alikhan Nabil-Fareed | Petty Nicola | Ben Zakour Nouri | Beatson Scott
Next-Generation Sequencing of MicroRNAs for Breast Cancer Detection

Author(s): Qian Wu | Zuhong Lu | Hailing Li | Jiafeng Lu | Li Guo | Qinyu Ge
Major prospects for exploring canine vector borne diseases and novel intervention methods using 'omic technologies

Author(s): Gasser Robin | Cantacessi Cinzia | Campbell Bronwyn | Hofmann Andreas | Otranto Domenico
Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

Author(s): Franssen Susanne | Shrestha Roshan | Bräutigam Andrea | Bornberg-Bauer Erich | Weber Andreas
ENGINES: exploring single nucleotide variation in entire human genomes

Author(s): Amigo Jorge | Salas Antonio | Phillips Christopher
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

Author(s): Milan Massimo | Coppe Alessandro | Reinhardt Richard | Cancela Leonor | Leite Ricardo | Saavedra Carlos | Ciofi Claudio | Chelazzi Guido | Patarnello Tomaso | Bortoluzzi Stefania | Bargelloni Luca
Bacterial community diversity and variation in spray water sources and the tomato fruit surface

Author(s): Telias Adriana | White James | Pahl Donna | Ottesen Andrea | Walsh Christopher
Detection of recurrent rearrangement breakpoints from copy number data

Author(s): Ritz Anna | Paris Pamela | Ittmann Michael | Collins Colin | Raphael Benjamin
RAPSearch: a fast protein similarity search tool for short reads

Author(s): Ye Yuzhen | Choi Jeong-Hyeon | Tang Haixu
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

Author(s): Fraser Bonnie | Weadick Cameron | Janowitz Ilana | Rodd F Helen | Hughes Kimberly
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data

Author(s): Zagordi Osvaldo | Bhattacharya Arnab | Eriksson Nicholas | Beerenwinkel Niko
ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions

Author(s): Muiño Jose | Kaufmann Kerstin | van Ham Roeland | Angenent Gerco | Krajewski Pawel
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome

Author(s): Larsen Peter | Sreedasyam Avinash | Trivedi Geetika | Podila Gopi | Cseke Leland | Collart Frank
Detecting copy number status and uncovering subclonal markers in heterogeneous tumor biopsies

Author(s): Parisi Fabio | Ariyan Stephan | Narayan Deepak | Bacchiocchi Antonella | Hoyt Kathleen | Cheng Elaine | Xu Fang | Li Peining | Halaban Ruth | Kluger Yuval
Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach

Author(s): Mokry Michal | Nijman Isaäc | van Dijken Anja | Benjamins Rene | Heidstra Renze | Scheres Ben | Cuppen Edwin
A comprehensive platform for highly multiplexed mammalian functional genetic screens

Author(s): Ketela Troy | Heisler Lawrence | Brown Kevin | Ammar Ron | Kasimer Dahlia | Surendra Anuradha | Ericson Elke | Blakely Kim | Karamboulas Dina | Smith Andrew | Durbic Tanja | Arnoldo Anthony | Cheung-Ong Kahlin | Koh Judice | Gopal Shuba | Cowley Glenn | Yang Xiaoping | Grenier Jennifer | Giaever Guri | Root David | Moffat Jason | Nislow Corey
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

Author(s): Straub Shannon | Fishbein Mark | Livshultz Tatyana | Foster Zachary | Parks Matthew | Weitemier Kevin | Cronn Richard | Liston Aaron
Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool

Author(s): Jérôme Mariette | Noirot Céline | Klopp Christophe
The development and characterization of a 60K SNP chip for chicken

Author(s): Groenen Martien | Megens Hendrik-Jan | Zare Yalda | Warren Wesley | Hillier LaDeana | Crooijmans Richard | Vereijken Addie | Okimoto Ron | Muir William | Cheng Hans
Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing

Author(s): Taudien Stefan | Szafranski Karol | Felder Marius | Groth Marco | Huse Klaus | Raffaelli Francesca | Petzold Andreas | Zhang Xinmin | Rosenstiel Philip | Hampe Jochen | Schreiber Stefan | Platzer Matthias
A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly

Author(s): Wang Yan | Sun Silong | Liu Bo | Wang Hui | Deng Jie | Liao Yongcui | Wang Qian | Cheng Feng | Wang Xiaowu | Wu Jian
ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

Author(s): Blanca Jose | Pascual Laura | Ziarsolo Peio | Nuez Fernando | Cañizares Joaquin
Integration of Solexa sequences on an ultradense genetic map in Brassica rapa L.

Author(s): Li Wei | Zhang Jiefu | Mou Yanglong | Geng Jianfeng | McVetty Peter | Hu Shengwu | Li Genyi
Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

Author(s): Santure Anna | Gratten Jake | Mossman Jim | Sheldon Ben | Slate Jon
A tissue-specific landscape of sense/antisense transcription in the mouse intestine

Author(s): Klostermeier Ulrich | Barann Matthias | Wittig Michael | Häsler Robert | Franke Andre | Gavrilova Olga | Kreck Benjamin | Sina Christian | Schilhabel Markus | Schreiber Stefan | Rosenstiel Philip
CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping

Author(s): Nguyen Tung | Shi Weisong | Ruden Douglas
Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

Author(s): Durban Jordi | Juárez Paula | Angulo Yamileth | Lomonte Bruno | Flores-Diaz Marietta | Alape-Girón Alberto | Sasa Mahmood | Sanz Libia | Gutiérrez José | Dopazo Joaquín | Conesa Ana | Calvete Juan
Single nucleotide polymorphism discovery in elite north american potato germplasm

Author(s): Hamilton John | Hansey Candice | Whitty Brett | Stoffel Kevin | Massa Alicia | Van Deynze Allen | De Jong Walter | Douches David | Buell C Robin
A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella

Author(s): Vogel Heiko | Altincicek Boran | Glöckner Gernot | Vilcinskas Andreas
Genome-wide prediction of splice-modifying SNPs in human genes using a new analysis pipeline called AASsites

Author(s): Faber Kirsten | Glatting Karl-Heinz | Mueller Phillip | Risch Angela | Hotz-Wagenblatt Agnes
Estimation of allele frequency and association mapping using next-generation sequencing data

Author(s): Kim Su | Lohmueller Kirk | Albrechtsen Anders | Li Yingrui | Korneliussen Thorfinn | Tian Geng | Grarup Niels | Jiang Tao | Andersen Gitte | Witte Daniel | Jorgensen Torben | Hansen Torben | Pedersen Oluf | Wang Jun | Nielsen Rasmus
Ψ-RA: a parallel sparse index for genomic read alignment

Author(s): Oğuzhan Külekci M | Hon Wing-Kai | Shah Rahul | Scott Vitter Jeffrey | Xu Bojian
Evaluation of short read metagenomic assembly

Author(s): Charuvaka Anveshi | Rangwala Huzefa
An integrated ChIP-seq analysis platform with customizable workflows

Author(s): Giannopoulou Eugenia | Elemento Olivier
Assembly of non-unique insertion content using next-generation sequencing

Author(s): Parrish Nathaniel | Hormozdiari Farhad | Eskin Eleazar
Exome-wide DNA capture and next generation sequencing in domestic and wild species

Author(s): Cosart Ted | Beja-Pereira Albano | Chen Shanyuan | Ng Sarah | Shendure Jay | Luikart Gordon
Implication of next-generation sequencing on association studies

Author(s): Siu Hoicheong | Zhu Yun | Jin Li | Xiong Momiao
Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments

Author(s): Missirian Victor | Comai Luca | Filkov Vladimir
Sum-Based Meta-Analytical Enrichment of Gene Expression Data to Identify Pathway Signatures of Cancers

Author(s): Kavishwar Wagholikar | Prasanna Venkatraman | Sundararajan Vijayraghavan | Chandan Kumar-Sinha
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