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Finding Alu in primate genomes with AF-1

Author(s): Ravi Shankar | Bhavesh Kataria | Mitali Mukerji
Loss of Olfactory Receptor Genes Coincides with the Acquisition of Full Trichromatic Vision in Primates

Author(s): Gilad Yoav | Wiebe Victor | Przeworski Molly | Lancet Doron | Paabo Svante
Tracking Alu evolution in New World primates

Author(s): Ray David | Batzer Mark
Patterns of evolution of host proteins involved in retroviral pathogenesis

Author(s): Ortiz Millan | Bleiber Gabriela | Martinez Raquel | Kaessmann Henrik | Telenti Amalio
Duplication and relocation of the functional DPY19L2 gene within low copy repeats

Author(s): Carson Andrew | Cheung Joseph | Scherer Stephen
Family expansion and gene rearrangements contributed to the functional specialization of PRDM genes in vertebrates

Author(s): Fumasoni Irene | Meani Natalia | Rambaldi Davide | Scafetta Gaia | Alcalay Myriam | Ciccarelli Francesca
Position of chromosomes 18, 19, 21 and 22 in 3D-preserved interphase nuclei of human and gorilla and white hand gibbon

Author(s): Manvelyan Marina | Hunstig Friederike | Mrasek Kristin | Bhatt Samarth | Pellestor Franck | Weise Anja | Liehr Thomas
Accumulation of GC donor splice signals in mammals

Author(s): Churbanov Alexander | Winters-Hilt Stephen | Koonin Eugene | Rogozin Igor
A novel adenovirus of Western lowland gorillas (Gorilla gorilla gorilla)

Author(s): Wevers Diana | Leendertz Fabian | Scuda Nelly | Boesch Christophe | Robbins Martha | Head Josephine | Ludwig Carsten | Kühn Joachim | Ehlers Bernhard
Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats

Author(s): Greenberger Shoshana | Levanon Erez | Paz-Yaacov Nurit | Barzilai Aviv | Safran Michal | Osenberg Sivan | Amariglio Ninette | Rechavi Gideon | Eisenberg Eli
Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution

Author(s): Kjeldbjerg Anders | Villesen Palle | Aagaard Lars | Pedersen Finn
Chromosomal evolution of the PKD1 gene family in primates

Author(s): Kirsch Stefan | Pasantes Juanjo | Wolf Andreas | Bogdanova Nadia | Münch Claudia | Pennekamp Petra | Krawczak Michael | Dworniczak Bernd | Schempp Werner
Retrocopy contributions to the evolution of the human genome

Author(s): Baertsch Robert | Diekhans Mark | Kent W James | Haussler David | Brosius Jürgen
Genomic plasticity of the immune-related Mhc class I B region in macaque species

Author(s): Bonhomme Maxime | Doxiadis Gaby | Heijmans Corrine | Vervoort Virginie | Otting Nel | Bontrop Ronald | Crouau-Roy Brigitte
Pitfalls of the most commonly used models of context dependent substitution

Author(s): Lindsay Helen | Yap Von | Ying Hua | Huttley Gavin
DNA methylation and mRNA expression of SYN III, a candidate gene for schizophrenia

Author(s): Murphy Brenda | O'Reilly Richard | Singh Shiva
Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4

Author(s): Switzer William | Salemi Marco | Qari Shoukat | Jia Hongwei | Gray Rebecca | Katzourakis Aris | Marriott Susan | Pryor Kendle | Wolfe Nathan | Burke Donald | Folks Thomas | Heneine Walid
Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution

Author(s): Kemkemer Claus | Kohn Matthias | Cooper David | Froenicke Lutz | Högel Josef | Hameister Horst | Kehrer-Sawatzki Hildegard
DDX11L: a novel transcript family emerging from human subtelomeric regions

Author(s): Costa Valerio | Casamassimi Amelia | Roberto Roberta | Gianfrancesco Fernando | Matarazzo Maria | D'Urso Michele | D'Esposito Maurizio | Rocchi Mariano | Ciccodicola Alfredo
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning

Author(s): Lemey Philippe | Lott Martin | Martin Darren | Moulton Vincent
Evolution of SIV toward RANTES resistance in macaques rapidly progressing to AIDS upon coinfection with HHV-6A

Author(s): Biancotto Angélique | Grivel Jean-Charles | Lisco Andrea | Vanpouille Christophe | Markham Phillip | Gallo Robert | Margolis Leonid | Lusso Paolo
Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

Author(s): Liu Yuen-Jong | Zheng Deyou | Balasubramanian Suganthi | Carriero Nicholas | Khurana Ekta | Robilotto Rebecca | Gerstein Mark
Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs

Author(s): Zhang Yong | Liu Jun | Jia Chunshi | Li Tingting | Wu Rimao | Wang Jie | Chen Ying | Zou Xiaoting | Chen Runsheng | Wang Xiu-Jie | Zhu Dahai
Anti-tetherin activities in Vpu-expressing primate lentiviruses

Author(s): Yang Su | Lopez Lisa | Hauser Heiko | Exline Colin | Haworth Kevin | Cannon Paula
Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins

Author(s): Morgan Claire | Loughran Noeleen | Walsh Thomas | Harrison Alan | O'Connell Mary
Reconstructing the ups and downs of primate brain evolution: implications for adaptive hypotheses and Homo floresiensis

Author(s): Montgomery Stephen | Capellini Isabella | Barton Robert | Mundy Nicholas
Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes

Author(s): Mukherjee Krishanu | Conway de Macario Everly | Macario Alberto | Brocchieri Luciano
The human RPS4 paralogue on Yq11.223 encodes a structurally conserved ribosomal protein and is preferentially expressed during spermatogenesis

Author(s): Lopes Alexandra | Miguel Ricardo | Sargent Carole | Ellis Peter | Amorim António | Affara Nabeel
Impact of Alu repeats on the evolution of human p53 binding sites

Author(s): Cui Feng | Sirotin Michael | Zhurkin Victor
Primate-specific evolution of noncoding element insertion into PLA2G4C and human preterm birth

Author(s): Plunkett Jevon | Doniger Scott | Morgan Thomas | Haataja Ritva | Hallman Mikko | Puttonen Hilkka | Menon Ramkumar | Kuczynski Edward | Norwitz Errol | Snegovskikh Victoria | Palotie Aarno | Peltonen Leena | Fellman Vineta | DeFranco Emily | Chaudhari Bimal | Oates John | Boutaud Olivier | McGregor Tracy | McElroy Jude | Teramo Kari | Borecki Ingrid | Fay Justin | Muglia Louis
The rapid generation of chimerical genes expanding protein diversity in zebrafish

Author(s): Fu Beide | Chen Ming | Zou Ming | Long Manyuan | He Shunping
Recent evolution of the NF-κB and inflammasome regulating protein POP2 in primates

Author(s): Atianand Maninjay | Fuchs Travis | Harton Jonathan
Does body posture influence hand preference in an ancestral primate model?

Author(s): Scheumann Marina | Joly-Radko Marine | Leliveld Lisette | Zimmermann Elke
The Evolution of Trypanosomes Infecting Humans and Primates

Author(s): Stevens Jamie | Noyes Harry | Gibson Wendy
Long-distance calls in Neotropical primates

Author(s): Oliveira Dilmar A.G. | Ades César
Extreme conservation of noncoding DNA near HoxD complex of vertebrates

Author(s): Sabarinadh Chilaka | Subramanian Subbaya | Tripathi Anshuman | Mishra Rakesh
Ancient Adaptive Evolution of the Primate Antiviral DNA-Editing Enzyme APOBEC3G

Author(s): Sawyer Sara L | Emerman Michael | Malik Harmit S
Analysis of the human Alu Ye lineage

Author(s): Salem Abdel-Halim | Ray David | Hedges Dale | Jurka Jerzy | Batzer Mark
The complexity of selection at the major primate β-defensin locus

Author(s): Semple Colin | Maxwell Alison | Gautier Philippe | Kilanowski Fiona | Eastwood Hayden | Barran Perdita | Dorin Julia
Vestige: Maximum likelihood phylogenetic footprinting

Author(s): Wakefield Matthew | Maxwell Peter | Huttley Gavin
Comprehensive search for intra- and inter-specific sequence polymorphisms among coding envelope genes of retroviral origin found in the human genome: genes and pseudogenes

Author(s): de Parseval Nathalie | Diop Gora | Blaise Sandra | Helle François | Vasilescu Alexandre | Matsuda Fumihiko | Heidmann Thierry
Emergence of young human genes after a burst of retroposition in primates.

Author(s): Marques Ana Claudia | Dupanloup Isabelle | Vinckenbosch Nicolas | Reymond Alexandre | Kaessmann Henrik
Discovery of human inversion polymorphisms by comparative analysis of human and chimpanzee DNA sequence assemblies.

Author(s): Feuk Lars | Macdonald Jeffrey R | Tang Terence | Carson Andrew R | Li Martin | Rao Girish | Khaja Razi | Scherer Stephen W
Genetic variability of the envelope gene of Type D simian retrovirus-2 (SRV-2) subtypes associated with SAIDS-related retroperitoneal fibromatosis in different macaque species

Author(s): Philipp-Staheli Jeannette | Marquardt Taya | Thouless Margaret | Bruce A Gregory | Grant Richard | Tsai Che-Chung | Rose Timothy
Heterotachy in mammalian promoter evolution.

Author(s): Taylor Martin S | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Semple Colin A M
Role of common human TRIM5α variants in HIV-1 disease progression

Author(s): Goldschmidt Valérie | Bleiber Gabriela | May Margaret | Martinez Raquel | Ortiz Millàn | Telenti Amalio
Identification of the ancestral killer immunoglobulin-like receptor gene in primates

Author(s): Sambrook Jennifer | Bashirova Arman | Andersen Hanne | Piatak Mike | Vernikos George | Coggill Penny | Lifson Jeff | Carrington Mary | Beck Stephan
Novel porcine repetitive elements

Author(s): Wiedmann Ralph | Nonneman Dan | Keele John
Primate brain architecture and selection in relation to sex

Author(s): Lindenfors Patrik | Nunn Charles | Barton Robert
Pathogenicity and immunogenicity of attenuated, nef-deleted HIV-1 strains in vivo

Author(s): Gorry Paul | McPhee Dale | Verity Erin | Dyer Wayne | Wesselingh Steven | Learmont Jennifer | Sullivan John | Roche Michael | Zaunders John | Gabuzda Dana | Crowe Suzanne | Mills John | Lewin Sharon | Brew Bruce | Cunningham Anthony | Churchill Melissa
Molecular evolution of the human SRPX2 gene that causes brain disorders of the Rolandic and Sylvian speech areas

Author(s): Royer Barbara | Soares Dinesh | Barlow Paul | Bontrop Ronald | Roll Patrice | Robaglia-Schlupp Andrée | Blancher Antoine | Levasseur Anthony | Cau Pierre | Pontarotti Pierre | Szepetowski Pierre
Molecular evolution of the cytochrome c oxidase subunit 5A gene in primates

Author(s): Uddin Monica | Opazo Juan | Wildman Derek | Sherwood Chet | Hof Patrick | Goodman Morris | Grossman Lawrence
Human glycolipid transfer protein (GLTP) genes: organization, transcriptional status and evolution

Author(s): Zou Xianqiong | Chung Taeowan | Lin Xin | Malakhova Margarita | Pike Helen | Brown Rhoderick
Evolution of the DAZ gene and the AZFc region on primate Y chromosomes

Author(s): Yu Yueh-Hsiang | Lin Yi-Wen | Yu Jane-Fang | Schempp Werner | Yen Pauline
RPS4Y gene family evolution in primates

Author(s): Andrés Olga | Kellermann Thomas | López-Giráldez Francesc | Rozas Julio | Domingo-Roura Xavier | Bosch Montserrat
Evolution of a behavior-linked microsatellite-containing element in the 5' flanking region of the primate AVPR1A gene

Author(s): Donaldson Zoe | Kondrashov Fyodor | Putnam Andrea | Bai Yaohui | Stoinski Tara | Hammock Elizabeth | Young Larry
Analyse structurale à haute résolution des dents de Oreopithecus bambolii

Author(s): Clément ZANOLLI | Lorenzo ROOK | Roberto MACCHIARELLI
The gesture substratum of stone tool making: an experimental approach

Author(s): Núria GERIBÀS | Marina MOSQUERA | Josep M. VERGÈS
Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function

Author(s): Niu Ao-lei | Wang Yin-qiu | Zhang Hui | Liao Cheng-hong | Wang Jin-kai | Zhang Rui | Che Jun | Su Bing
Phylogeny and adaptive evolution of the brain-development gene microcephalin (MCPH1) in cetaceans

Author(s): McGowen Michael | Montgomery Stephen | Clark Clay | Gatesy John
Detection of lineage-specific evolutionary changes among primate species

Author(s): Pertea Mihaela | Pertea Geo | Salzberg Steven
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