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IN SILICO MODELLING AND DRUG DESIGN – A REVIEW

Author(s): Gupta Praveen kumar | Agrawal Pushpa | Shivakumar Neeta | Hiremath Suhasini.B
Monocyte response receptors in BCG driven delayed type hypersensitivity to tuberculin.

Author(s): Dominik Strapagiel | Karolina Kasztalska | Magdalena Druszczyńska | Magdalena Kowalewicz-Kulbat | Adriana Vrba | Agnieszka Matusiak | Magdalena Chmiela | Wiesława Rudnicka
GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation

Author(s): Mark Gosink | Sawsan Khuri | Camilo Valdes | Zhijie Jiang | Nicholas F. Tsinoremas
Interactions between RNase P protein subunits in Archaea

Author(s): Thomas A. Hall | James W. Brown
Developing a Protein-Interactions Ontology

Author(s): Esther Ratsch | Jörg Schultz | Jasmin Saric | Philipp Cimiano Lavin | Ulrike Wittig | Uwe Reyle | Isabel Rojas
Protein Interactions from Complexes: A Structural Perspective

Author(s): Luke Hakes | David L. Robertson | Stephen G. Oliver | Simon C. Lovell
New Strategies to Develop Novel Pain Therapies: Addressing Thermoreceptors from Different Points of View

Author(s): Asia Fernández-Carvajal | Gregorio Fernández-Ballester | Isabel Devesa | José Manuel González-Ros | Antonio Ferrer-Montiel
Role of annexin II in pancreatic and colon cancer cell growth promotion

Author(s): Agata Ptak-Belowska | Aneta Targosz | Gracjana Krzysiek-Mączka | Tomasz Brzozowski | Wiesław W. Pawlik
Expression and Characterization of Chandipura Virus Proteins

Author(s): Kapila Kumar | Jyoti Rana | Ayushi Guleria | Amita Gupta | Vijay K. Chaudhary | Sanjay Gupta
SAFE Software and FED Database to Uncover Protein-Protein Interactions using Gene Fusion Analysis

Author(s): Dimosthenis Tsagrasoulis | Vasilis Danos, | Maria Kissa, | Philip Trimpalis, | V. Lila Koumandou | Amalia D. Karagouni | Athanasios Tsakalidis | Sophia Kossida
Accommodation of profound sequence differences at the interfaces of eubacterial RNA polymerase multi-protein assembly

Author(s): Nambudiry Rekha | Lakshmipuram Seshadri Swapna | Narayanaswamy Srinivasan*
In vitro and In silico studies on inhibitory effects of curcumin on multi drug resistance associated protein (MRP1) in retinoblastoma cells

Author(s): Seethalakshmi Sreenivasan | Sathyabaarathi Ravichandran | Umashankar Vetrivel* | Subramanian Krishnakumar
Analysis of human collagen sequences

Author(s): Manisha Nassa | Pracheta Anand | Aditi Jain | Aastha Chhabra | Astha Jaiswal | Umang Malhotra | Vibha Rani*
A classification scoring schema to validate protein interactors

Author(s): Prashanth Suravajhala* | Vijayaraghava Seshadri Sundararajan
Ant Larval Demand Reduces Aphid Colony Growth Rates in an Ant-Aphid Interaction

Author(s): Tom H. Oliver | Simon R. Leather | James M. Cook
Study of a Novel Gene Overexpressed in Head & Neck Tumors

Author(s): A Seghatoleslam | B Wasylyk
Filovirus Entry: A Novelty in the Viral Fusion World

Author(s): Catherine L. Hunt | Nicholas J. Lennemann | Wendy Maury
Homology modeling, active site prediction, and targeting the anti hypertension activity through molecular docking on endothelin – B receptor domain

Author(s): Daddam Jayasimha Rayalu | Chandrabose Selvaraj | Nagapatla Udaya Kumar | Sanjeev Kumar Singh | Ramakrishan Ganeshan | Panthangi Seshapani
In silico modeling of ligand molecule for non structural 3 (NS3) protein target of flaviviruses

Author(s): Shefali Agnihotri | Ranjana Narula | Kaishiv Joshi | Sandeep Rana | Maneet Singh
Metabolic pathway analysis and molecular docking analysis for identification of putative drug targets in Toxoplasma gondii: novel approach

Author(s): Budhayash Gautam1 | Gurmit Singh | Gulshan Wadhwa | Rohit Farmer | Satendra Singh | Atul Kumar Singh | Prashant Ankur Jain | Pramod Kumar Yadav
Comparison of Hubs in Effective Normal and Tumor Protein Interaction Networks

Author(s): Mitra Mirzarezaee | Babak N. Araabi | Mehdi Sadeghi
Modeling Structures and Motions of Loops in Protein Molecules

Author(s): Amarda Shehu | Lydia E. Kavraki
A LINEAR QSAR AND DOCKING APPROACH TO MODEL INHIBITORY ACTIVITY OF 2-ARYLBENZOXAZOLE DERIVATIVES AS CHOLESTERYL ESTER TRANSFER PROTEIN (CETP) INHIBITORS

Author(s): MUKESH YADAV, ANURAJ NAYARISSERI, SHOBHA JOSHI, ANKITA GUPTA, PURVA HOLKAR, ASHISH RAJPUT, RISHABH JAIN
Novel Technology for Protein-Protein Interaction-based Targeted Drug Discovery

Author(s): Jung Me Hwang | Kyung-Bok Lee | Jong-Soon Choi | Jaerang Rho | Gun-Hwa Kim | Seung Il Kim | Soohyun Kim | Zee-Won Lee
Structure Based Antibody-Like Peptidomimetics

Author(s): Ramachandran Murali | Mark I. Greene
Short-term antihypertensive therapy lowers the C-reactive protein level

Author(s): Andrzej Madej | Aleksandra Bołdys | Łukasz Bułdak | Krzysztof Łabuzek | Marcin Basiak | Bogusław Okopień
Intake of metabolizable energy in adult canaries (serinus canaria) Consumo de energia metabolizável para canários ("Serinus canaria") adultos

Author(s): Ana Carolina Euler | Walter Motta Ferreira | Flávia Borges Saad | Edgar Alencar Teixeira
Relevant Networks involving the p53 Signalling Pathway in Renal Cell Carcinoma

Author(s): V. Medina Villaamil | G. Aparicio Gallego | I. Santamarina Caínzos | L. Valbuena Ruvira | M. Valladares-Ayerbes | L. M. Antón Aparicio
SPT5 affects the rate of mRNA degradation and physically interacts with CCR4 but does not control mRNA deadenylation*

Author(s): Darren J. Lee | Clyde L. Denis | Palaniswamy Viswanathan | Yajun Cui | Yueh-Chin Chiang
Hormonal Treatments for Bipolar Disorder: A Review of the Literature

Author(s): Nancy C. P. Low | Tuong-Vi Nguyen
Hormonal Treatments for Bipolar Disorder: A Review of the Literature

Author(s): Nancy C. P. Low | Tuong-Vi Nguyen
Bioactive Peptides: A Review

Author(s): Shrikant Sharma | Raghvendar Singh | Shashank Rana
BINDING ISOTHERMS SURFACTANT-PROTEINS

Author(s): Elena Irina Moater | Cristiana Radulescu | Ionica Ionita
The role of adhesive molecules in endometrial cancer: part I

Author(s): Michał Wojciechowski | Tomasz Krawczyk | Janusz Śmigielski | Andrzej Malinowski
The Slowly Aggregating Salmon Calcitonin: A Useful Tool for the Study of the Amyloid Oligomers Structure and Activity

Author(s): Marco Diociaiuti | Maria Cristina Gaudiano | Fiorella Malchiodi-Albedi
SEASONAL VARIATION OF CHEMICAL COMPOSITION AND DRY MATTER DIGESTIBILITY OF RANGELANDS IN NW GREECE

Author(s): I MOUNTOUSIS | K PAPANIKOLAOU | G STANOGIAS | F CHATZITHEODORIDIS | C ROUKOS
Yeast telomeres: how to ignore essential double-strand DNA breaks?

Author(s): Lubomir Tomaska | Judita Sadovska | Jozef Nosek | Jack D. Griffith
Ionic Channels as Targets for Drug Design: A Review on Computational Methods

Author(s): Gregorio Fernández-Ballester | Asia Fernández-Carvajal | José Manuel González-Ros | Antonio Ferrer-Montiel
Discovery of Potential M2 Channel Inhibitors Based on the Amantadine Scaffold via Virtual Screening and Pharmacophore Modeling

Author(s): Linh Tran | Sy Bing Choi | Belal O. Al-Najjar | Muhammad Yusuf | Habibah A. Wahab | Ly Le
Ekspresja białek Id1, epidermalnego czynnika wzrostu (EGF) i jego receptora (EGF-R) w nowotworach złośliwych jajnika

Author(s): Artur Czekierdowski | Sylwia Czekierdowska | Jarosław Daniłoś | Andrzej Nowakowski | Norbert Stachowicz
The role of adhesive molecules in endometrial cancer: part II

Author(s): Michał Wojciechowski | Tomasz Krawczyk | Janusz Śmigielski | Andrzej Malinowski
Scoring Function Based on Weighted Residue Network

Author(s): Xiong Jiao | Shan Chang
G-protein Coupled Receptor Dimerization

Author(s): Nikzad Nikbin | Christine Edwards | Christopher A Reynolds
The Human Antibody Response to Dengue Virus Infection

Author(s): Wahala M. P. B. Wahala | Aravinda M. de Silva
Unbinding Process of Amelogenin and Fibrinogen Adsorbed on Different Solid Surfaces Using AFM

Author(s): Ludovic Richert | Abdessamad Boukari | Simon Berner | Michel Dard | Joseph Hemmerlé
Brain Interactions between Extinction and Reconsolidation in the Treatment of Fear Memories

Author(s): Dagieli Sartor | Natália Gindri Fiorenza | Jociane de Carvalho Myskiw | Iván Izquierdo
Learning Probabilistic Models of Hydrogen Bond Stability from Molecular Dynamics Simulation Trajectories

Author(s): Igor Chikalov | Peggy Yao | Mikhail Moshkov | Jean-Claude Latombe
Binding mechanism of halide ions to bovine serum albumin and hemoglobin: investigated by ion selective-electrode

Author(s): Gongke Wang | Wen Tang | Xiaoxiao Hao | Changling Yan | Yan Lu
Understanding the Glycoproteins Release from Alginate-Barium Capsules in Physiologic Enviroments

Author(s): Edgar Perez Herrero | Eva M. Martin del Valle | Miguel A. Galán
MicroRNAs coordinately regulate protein complexes

Author(s): Sass Steffen | Dietmann Sabine | Burk Ulrike | Brabletz Simone | Lutter Dominik | Kowarsch Andreas | Mayer Klaus | Brabletz Thomas | Ruepp Andreas | Theis Fabian | Wang Yu
GPS-Prot: A web-based visualization platform for integrating host-pathogen interaction data

Author(s): Fahey Marie | Bennett Melanie | Mahon Cathal | Jäger Stefanie | Pache Lars | Kumar Dhiraj | Shapiro Alex | Rao Kanury | Chanda Sumit | Craik Charles | Frankel Alan | Krogan Nevan
AKAP12 and AKAP5 form higher-order hetero-oligomers

Author(s): Gao Shujuan | Wang Hsien-yu | Malbon Craig
Comparison of genomic and proteomic data in recurrent airway obstruction affected horses using ingenuity pathway analysis®

Author(s): Racine Julien | Gerber Vinzenz | Miskovic Feutz Marybeth | Riley C Paige | Adamec Jiri | Swinburne June | Couetil Laurent
Cruciform structures are a common DNA feature important for regulating biological processes

Author(s): Brázda Václav | Laister Rob | Jagelská Eva | Arrowsmith Cheryl
Rigorous assessment and integration of the sequence and structure based features to predict hot spots

Author(s): Chen Ruoying | Chen Wenjing | Yang Sixiao | Wu Di | Wang Yong | Tian Yingjie | Shi Yong
Media composition influences yeast one- and two-hybrid results

Author(s): Liu Ying | Merchant Zabeena | Hsiao Hao-Ching | Gonzalez Kim | Matthews Kathleen | Bondos Sarah
Biological interaction networks are conserved at the module level

Author(s): Zinman Guy | Zhong Shan | Bar-Joseph Ziv
A single amino acid change within the R2 domain of the VvMYB5b transcription factor modulates affinity for protein partners and target promoters selectivity

Author(s): Hichri Imène | Deluc Laurent | Barrieu François | Bogs Jochen | Mahjoub Ali | Regad Farid | Gallois Bernard | Granier Thierry | Trossat-Magnin Claudine | Gomès Eric | Lauvergeat Virginie
Selection of organisms for the co-evolution-based study of protein interactions

Author(s): Herman Dorota | Ochoa David | Juan David | Lopez Daniel | Valencia Alfonso | Pazos Florencio
Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps

Author(s): Yip Kevin | Utz Lukas | Sitwell Simon | Hu Xihao | Sidhu Sachdev | Turk Benjamin | Gerstein Mark | Kim Philip
Mapping of ESE-1 subdomains required to initiate mammary epithelial cell transformation via a cytoplasmic mechanism

Author(s): Prescott Jason | Poczobutt Joanna | Tentler John | Walker Darius | Gutierrez-Hartmann Arthur
Improved protein arrays for quantitative systems analysis of the dynamics of signaling pathway interactions

Author(s): Wang Xiaoyu | Dong Ying | Jiwani Ameena | Zou Yonglong | Pastor Johanne | Kuro-o Makoto | Habib Amyn | Ruan Minzi | Boothman David | Yang Chin-Rang
CastorDB: a comprehensive knowledge base for Ricinus communis

Author(s): Thakur Shalabh | Jha Sanjay | Chattoo Bharat
Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature

Author(s): Wang Xinglong | Rak Rafal | Restificar Angelo | Nobata Chikashi | Rupp CJ | Batista-Navarro Riza Theresa | Nawaz Raheel | Ananiadou Sophia
Detection of interaction articles and experimental methods in biomedical literature

Author(s): Schneider Gerold | Clematide Simon | Rinaldi Fabio
Measuring and analyzing tissue specificity of human genes and protein complexes

Author(s): Emig Dorothea | Kacprowski Tim | Albrecht Mario
Prediction of protein-binding areas by small-world residue networks and application to docking

Author(s): Pons Carles | Glaser Fabian | Fernandez-Recio Juan
Decomposing PPI networks for complex discovery

Author(s): Liu Guimei | Yong Chern Han | Chua Hon Nian | Wong Limsoon
A binary matrix factorization algorithm for protein complex prediction

Author(s): Tu Shikui | Chen Runsheng | Xu Lei
ATPsite: sequence-based prediction of ATP-binding residues

Author(s): Chen Ke | Mizianty Marcin | Kurgan Lukasz
Prediction of 492 human protein kinase substrate specificities

Author(s): Safaei Javad | Maňuch Ján | Gupta Arvind | Stacho Ladislav | Pelech Steven
Structural studies of the PARP-1 BRCT domain

Author(s): Loeffler Paul | Cuneo Matthew | Mueller Geoffrey | DeRose Eugene | Gabel Scott | London Robert
Constructing a robust protein-protein interaction network by integrating multiple public databases

Author(s): Martha Venkata-Swamy | Liu Zhichao | Guo Li | Su Zhenqiang | Ye Yanbin | Fang Hong | Ding Don | Tong Weida | Xu Xiaowei
Orthoretroviral-like prototype foamy virus gag-pol expression is compatible with viral replication

Author(s): Swiersy Anka | Wiek Constanze | Reh Juliane | Zentgraf Hanswalter | Lindemann Dirk
Medusa: A tool for exploring and clustering biological networks

Author(s): Pavlopoulos Georgios | Hooper Sean | Sifrim Alejandro | Schneider Reinhard | Aerts Jan
Methadone adverse reaction presenting with large increase in plasma methadone binding: a case series

Author(s): Lu Wenjie | Zhou Weidong | Kreutz Yvonne | Flockhart David
The protein interaction map of bacteriophage lambda

Author(s): Rajagopala Seesandra | Casjens Sherwood | Uetz Peter
Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network

Author(s): Liu Hui | Su Jianzhong | Li Junhua | Liu Hongbo | Lv Jie | Li Boyan | Qiao Hong | Zhang Yan
Arabidopsis seedling flood-inoculation technique: a rapid and reliable assay for studying plant-bacterial interactions

Author(s): Ishiga Yasuhiro | Ishiga Takako | Uppalapati Srinivasa | Mysore Kirankumar
Hydration studies on the archaeal protein Sso7d using NMR measurements and MD simulations

Author(s): Bernini Andrea | Spiga Ottavia | Consonni Roberto | Arosio Ivana | Fusi Paola | Cirri Simone | Guagliardi Annamaria | Niccolai Neri
Towards Inferring Protein Interactions: Challenges and Solutions

Author(s): Zhang Ya | Zha Hongyuan | Chu Chao-Hsien | Ji Xiang
An in silico approach combined with in vivo experiments enables the identification of a new protein whose overexpression can compensate for specific respiratory defects in Saccharomyces cerevisiae

Author(s): Glatigny Annie | Mathieu Lise | Herbert Christopher | Dujardin Geneviève | Meunier Brigitte | Mucchielli-Giorgi Marie-Hélène
The secret life of kinases: functions beyond catalysis

Author(s): Rauch Jens | Volinsky Natalia | Romano David | Kolch Walter
The TPR-containing domain within Est1 homologs exhibits species-specific roles in telomerase interaction and telomere length homeostasis

Author(s): Sealey David | Kostic Aleksandar | LeBel Catherine | Pryde Fiona | Harrington Lea
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation

Author(s): Ren Xianwen | Wang Yong-Cui | Wang Yong | Zhang Xiang-Sun | Deng Nai-Yang
Network analysis of microRNAs and their regulation in human ovarian cancer

Author(s): Schmeier Sebastian | Schaefer Ulf | Essack Magbubah | Bajic Vladimir
Structural analysis of hubs in human NR-RTK network

Author(s): Choura Mouna | Rebaï Ahmed
HORIBALFRE program: Higher Order Residue Interactions Based ALgorithm for Fold REcognition

Author(s): Pandurangan Sundaramurthy | Raashi Sreenivasan | Khader Shameer | Sunita Gakkhar | Ramanathan Sowdhamini
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