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Search Articles for "Protein loop"

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BioDEAL: community generation of biological annotations

Author(s): Breimyer Paul | Green Nathan | Kumar Vinay | Samatova Nagiza
Stability and Folding Behavior Analysis of Zinc-Finger Using Simple Models

Author(s): Shan Chang | Xiong Jiao | Jian-Ping Hu | Yan Chen | Xu-Hong Tian
Conformations of the monomeric hepatitis C virus RNA-dependent RNA polymerase

Author(s): Sreedhar Chinnaswamy | Ayaluru Murali | Hui Cai | et al
Inhibition of hepatitis C virus replication by single-stranded RNA structural mimics

Author(s): Robert Smolic, Martina Smolic, John H Andorfer, Catherine H Wu, Robert M Smith, George Y Wu
Progress in researches about focal adhesion kinase in gastrointestinal tract

Author(s): Hui Fang Hao, Yoshio Naomoto, Xiao-Hong Bao, Nobuyuki Watanabe, Kazufumi Sakurama, Kazuhiro Noma, Yasuko Tomono, Takuya Fukazawa, Yasuhiro Shirakawa, Tomoki Yamatsuji, Junji Matsuoka, Munenori Takaoka
A Long-Awaited Structure Is Rev-ealed

Author(s): Marie-Louise Hammarskjold | David Rekosh
Molecular Identification and Sequence Analysis of Tobacco Leaf Curl Begomovirus from Jember, East Java, Indonesia

Author(s): SRI HENDRASTUTI HIDAYAT | ORAWAN CHATCHAWANKANPANICH | NOOR AIDAWATI
TAp73 is one of the genes responsible for the lack of response to chemotherapy depending on B-Raf mutational status

Author(s): Herreros-Villanueva Marta | Muñiz Pilar | García-Girón Carlos | Cavia-Saiz Mónica | del Corral María
An autocrine sphingosine-1-phosphate signaling loop enhances NF-κB-activation and survival

Author(s): Blom Tomas | Bergelin Nina | Meinander Annika | Löf Christoffer | Slotte J Peter | Eriksson John | Törnquist Kid
Ribosome-Inactivating Proteins: From Plant Defense to Tumor Attack

Author(s): Maddalena de Virgilio | Alessio Lombardi | Rocco Caliandro | Maria Serena Fabbrini
Effect of Aqueous Extract of Aegle marmelos Fruit on Adherence and β-Lactam Resistance of Enteropathogenic Escherichia coli by Down Regulating Outer Membrane Protein C

Author(s): Subramaniya Bharathi Raja | Malliga Raman Murali | G.K. Malathi | K. Anbarasu | S. Niranjali Devaraj
A first genotyping assay of French cattle breeds based on a new allele of the extension gene encoding the melanocortin-1 receptor (Mc1r)

Author(s): Rouzaud François | Martin Juliette | Gallet Paul | Delourme Didier | Goulemot-Leger Valérie | Amigues Yves | Ménissier François | Levéziel Hubert | Julien Raymond | Oulmouden Ahmad
The CD-loop of PAI-2 (SERPINB2) is redundant in the targeting, inhibition and clearance of cell surface uPA activity

Author(s): Cochran Blake | Gunawardhana Lakshitha | Vine Kara | Lee Jodi | Lobov Sergei | Ranson Marie
Luciferase activity under direct ligand-dependent control of a muscarinic acetylcholine receptor

Author(s): Thor Doreen | Le Duc Diana | Strotmann Rainer | Schöneberg Torsten
Binding Mode Analysis of Bacillus subtilis Obg with Ribosomal Protein L13 through Computational Docking Study

Author(s): Yuno Lee | Woo Young Bang | Songmi Kim | Prettina Lazar | Jeong Dong Bahk | Keun Woo Lee
Mechanism of PP2A-mediated IKKβ dephosphorylation: a systems biological approach

Author(s): Witt Johannes | Barisic Sandra | Schumann Eva | Allgöwer Frank | Sawodny Oliver | Sauter Thomas | Kulms Dagmar
Identification of a nuclear localization motif in the serine/arginine protein kinase PSRPK of physarum polycephalum

Author(s): Liu Shide | Zhou Zhuolong | Lin Ziyang | Ouyang Qiuling | Zhang Jianhua | Tian Shengli | Xing Miao
Implications of high level pseudogene transcription in Mycobacterium leprae

Author(s): Williams Diana | Slayden Richard | Amin Amol | Martinez Alejandra | Pittman Tana | Mira Alex | Mitra Anirban | Nagaraja Valakunja | Morrison Norman | Moraes Milton | Gillis Thomas
Mechanism of HIV-1 Tat RNA translation and its activation by the Tat protein

Author(s): Charnay Nicolas | Ivanyi-Nagy Roland | Soto-Rifo Ricardo | Ohlmann Théophile | López-Lastra Marcelo | Darlix Jean-Luc
Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells

Author(s): Saeki Yuko | Endo Takaho | Ide Kaori | Nagashima Takeshi | Yumoto Noriko | Toyoda Tetsuro | Suzuki Harukazu | Hayashizaki Yoshihide | Sakaki Yoshiyuki | Okada-Hatakeyama Mariko
Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS

Author(s): Ceppi Maurizio | Clavarino Giovanna | Gatti Evelina | Schmidt Enrico | de Gassart Aude | Blankenship Derek | Ogola Gerald | Banchereau Jacques | Chaussabel Damien | Pierre Philippe
Modeling of loops in proteins: a multi-method approach

Author(s): Jamroz Michal | Kolinski Andrzej
Mining protein loops using a structural alphabet and statistical exceptionality

Author(s): Regad Leslie | Martin Juliette | Nuel Gregory | Camproux Anne-Claude
An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data

Author(s): Wang Congmao | Xu Jie | Zhang Dasheng | Wilson Zoe | Zhang Dabing
MicroRNA-21 inhibitor sensitizes human glioblastoma cells U251 (PTEN-mutant) and LN229 (PTEN-wild type) to taxol

Author(s): Ren Yu | Zhou Xuan | Mei Mei | Yuan Xu-Bo | Han Lei | Wang Guang-Xiu | Jia Zhi-Fan | Xu Peng | Pu Pei-Yu | Kang Chun-Sheng
The Zur regulon of Corynebacterium glutamicum ATCC 13032

Author(s): Schröder Jasmin | Jochmann Nina | Rodionov Dmitry | Tauch Andreas
Elevated endogenous expression of the dominant negative basic helix-loop-helix protein ID1 correlates with significant centrosome abnormalities in human tumor cells

Author(s): Manthey Carolin | Mern Demissew | Gutmann Anja | Zielinski Anne | Herz Corinna | Lassmann Silke | Hasskarl Jens
Forced unbinding of GPR17 ligands from wild type and R255I mutant receptor models through a computational approach

Author(s): Parravicini Chiara | Abbracchio Maria | Fantucci Piercarlo | Ranghino Graziella
Protein engineering of conger eel galectins by tracing of molecular evolution using probable ancestral mutants

Author(s): Konno Ayumu | Yonemaru Shintarou | Kitagawa Atsushi | Muramoto Koji | Shirai Tsuyoshi | Ogawa Tomohisa
Accelerated microevolution in an outer membrane protein (OMP) of the intracellular bacteria Wolbachia

Author(s): Baldo Laura | Desjardins Christopher | Russell Jacob | Stahlhut Julie | Werren John
The complete mitochondrial genome of the fall webworm, Hyphantria cunea (Lepidoptera: Arctiidae)

Author(s): Fang Liao, Lin Wang, Song Wu, Yu-Ping Li, Lei Zhao, Guo-Ming Huang, Chun-Jing Niu, Yan-Qun Liu, Ming-Gang Li
Novel monoclonal antibodies against Pdx1 reveal feedback regulation of Pdx1 protein levels

Author(s): T. Galbo | I. L Pedersen | T. Fløyel | C. H. Bang-Berthelsen | P. Serup | O. D Madsen | J. Hald
Increased Inhibitor of Differentiation 4 (Id4) Expression in Glioblastoma: A Tissue Microarray Study

Author(s): Weifin Zeng, Elisabeth J. Rushing, Daniel P. Hartmann, Norio Azumi
Protein-Protein Interaction Changes in an Archaeal Light-Signal Transduction

Author(s): Hideki Kandori | Yuki Sudo | Yuji Furutani
Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems

Author(s): Dabrowski Michal | Dojer Norbert | Zawadzka Malgorzata | Mieczkowski Jakub | Kaminska Bozena
Nuclear expression of FLT1 and its ligand PGF in FUS-DDIT3 carrying myxoid liposarcomas suggests the existence of an intracrine signaling loop

Author(s): Andersson Mattias | Göransson Melker | Olofsson Anita | Andersson Carola | Åman Pierre
A new family of phosphoinositide phosphatases in microorganisms: identification and biochemical analysis

Author(s): Beresford Nicola | Saville Charis | Bennett Hayley | Roberts Ian | Tabernero Lydia
Genetic and functional analysis of HIV-1 Rev Responsive Element (RRE) sequences from North-India

Author(s): Sharma Yogeshwar | Neogi Ujjwal | Sood Vikas | Banerjee Snigdha | Samrat Subodh | Wanchu Ajay | Singh Surjit | Banerjea Akhil
Improving predicted protein loop structure ranking using a Pareto-optimality consensus method

Author(s): Li Yaohang | Rata Ionel | Chiu See-wing | Jakobsson Eric
Robustness from flexibility in the fungal circadian clock

Author(s): Akman Ozgur | Rand David | Brown Paul | Millar Andrew
A Single Ser85Ala Mutation Enhances the Catalytic Efficiency of Subtilisin E from Bacillus subtilis 168

Author(s): Eliel R. Romero-Garc�a | Joel A. Esquivel-Naranjo | Norma Ram�rez-Ram�rez | Jes�s Garc�a-Soto | Mario Pedraza-Reyes
Cross-talk between ER and HER2 in breast carcinoma

Author(s): Todorović-Raković Nataša | Nešković-Konstantinović Zora | Nikolić-Vukosavljević Dragica
Pdlim7 is required for maintenance of the mesenchymal/epidermal Fgf signaling feedback loop during zebrafish pectoral fin development

Author(s): Camarata Troy | Snyder Diana | Schwend Tyler | Klosowiak Julian | Holtrup Brandon | Simon Hans-Georg
The intriguing Cyclophilin A-HIV-1 Vpr interaction: prolyl cis/trans isomerisation catalysis and specific binding

Author(s): Solbak Sara | Reksten Tove | Wray Victor | Bruns Karsten | Horvli Ole | Raae Arnt | Henklein Petra | Henklein Peter | Röder Rene | Mitzner David | Schubert Ulrich | Fossen Torgils
Virulence of Environmental Stenotrophomonas maltophilia Serologically Cross-reacting with Shigella-specific Antisera

Author(s): T.S. Bonny | N. Azmuda | S.I. Khan | N.K. Birkeland | M.Z. Rahman
Spinal toll like receptor 3 is involved in chronic pancreatitis-induced mechanical allodynia of rat

Author(s): Qian Nian-Song | Liao Yong-Hui | Feng Quan-Xing | Tang Yu | Dou Ke-Feng | Tao Kai-Shan
Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide

Author(s): Park Eun-Hee | Zhang Fan | Warringer Jonas | Sunnerhagen Per | Hinnebusch Alan
Conserved generation of short products at piRNA loci

Author(s): Berninger Philipp | Jaskiewicz Lukasz | Khorshid Mohsen | Zavolan Mihaela
NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins

Author(s): Restrepo-Montoya Daniel | Pino Camilo | Nino Luis | Patarroyo Manuel | Patarroyo Manuel
Human TGFalpha-derived peptide TGFalphaL3 fused with superantigen for immunotherapy of EGFR-expressing tumours

Author(s): Xu Quanbin | Zhang Xiaojuan | Yue Junjie | Liu Chuanxuan | Cao Cheng | Zhong Hui | Ma Qingjun
Cell- and region-specific miR30-based gene knock-down with temporal control in the rat brain

Author(s): Liu Beihui | Xu Haibo | Paton Julian | Kasparov Sergey
The CTCF insulator protein forms an unusual DNA structure

Author(s): MacPherson Melissa | Sadowski Paul
Membrane topology analysis of HIV-1 envelope glycoprotein gp41

Author(s): Liu Shujun | Kondo Naoyuki | Long Yufei | Xiao Dan | Iwamoto Aikichi | Matsuda Zene
Defining the antigen receptor-dependent regulatory network that induces arrest of cycling immature B-lymphocytes

Author(s): Jamal Mohammad | Ravichandran Srikanth | Jailkhani Noor | Chatterjee Samrat | Dua Raina | Rao Kanury
Modulation of inhibitory activity of xylanase - α-amylase inhibitor protein (XAIP): binding studies and crystal structure determination of XAIP- II from Scadoxus multiflorus at 1.2 Å resolution

Author(s): Kumar Sanjit | Singh Nagendra | Mishra Biswajit | Dube Divya | Sinha Mau | Singh S Baskar | Dey Sharmistha | Kaur Punit | Sharma Sujata | Singh Tej
Hepatopoietin Cn suppresses apoptosis of human hepatocellular carcinoma cells by up-regulating myeloid cell leukemia-1

Author(s): Jing Chang, Yang Liu, Dong-Dong Zhang, Da-Jin Zhang, Chu-Tse Wu, Li-Sheng Wang, Chun-Ping Cui
Interaction of hepatitis C virus envelope glycoprotein E2 with the large extracellular loop of tupaia CD81

Author(s): Zhan-Fei Tian, Hong Shen, Xi-Hua Fu, Yi-Chun Chen, Hubert E Blum, Thomas F Baumert, Xi-Ping Zhao
Aberrant activation of nuclear factor of activated T cell 2 in lamina propria mononuclear cells in ulcerative colitis

Author(s): Tsung-Chieh Shih, Sen-Yung Hsieh, Yi-Yueh Hsieh, Tse-Chin Chen, Chien-Yu Yeh, Chun-Jung Lin, Deng-Yn Lin, Cheng-Tang Chiu
Specific, simple and rapid detection of porcine circovirus type 2 using the loop-mediated isothermal amplification method

Author(s): Zhao Kai | Shi Wei | Han Fangting | Xu Yan | Zhu Lianlong | Zou Yong | Wu Xiao | Zhu Hong | Tan Furong | Tao Shiru | Tang Xueming
Human Nek6 is a monomeric mostly globular kinase with an unfolded short N-terminal domain

Author(s): Meirelles Gabriela | Silva Júlio | Mendonça Yuri | Ramos Carlos | Torriani Iris | Kobarg Jörg
High tolerance to mutations in a Chlamydia trachomatis peptide deformylase loop

Author(s): Christopher B Oey | Xiaofeng Bao | Christal Lewis | John E Kerrigan | Huizhou Fan
Morphology and physiology of the epiphyseal growth plate.

Author(s): Franciszek Burdan | Justyna Szumiło | Agnieszka Korobowicz | Rabia Farooquee | Sagar Patel | Ankit Patel | Anjalee Dave | Michał Szumiło | Michał Solecki | Robert Klepacz | Jarosław Dudka
The Complete Mitochondrial Genome of the Damsel Bug Alloeorhynchus bakeri (Hemiptera: Nabidae)

Author(s): Hu Li, Haiyu Liu, Liangming Cao, Aimin Shi, Hailin Yang, Wanzhi Cai
Use of reverse transcriptase loop-mediated isothermal amplification assay for field detection of Newcastle disease virus using less invasive samples

Author(s): H Kirunda | O M M Thekisoe | P D Kasaija | S D Kerfua | G W Nasinyama | J Opuda-Asibo | N Inoue
Modeling Structures and Motions of Loops in Protein Molecules

Author(s): Amarda Shehu | Lydia E. Kavraki
Molecular modelling, docking and interaction studies of human-plasmogen and salmonella-enolase with enolase inhibitors

Author(s): Digvijay Singh Chauhan | Sharat Chandra | Arun Gupta | Tiratha Raj Singh
Yeast telomeres: how to ignore essential double-strand DNA breaks?

Author(s): Lubomir Tomaska | Judita Sadovska | Jozef Nosek | Jack D. Griffith
Identification of microRNAs in ecological model plant Mimulus

Author(s): Muhammad Younas Khan Barozai | Muhammad Din | Iftikhar Ahmed Baloch
The mitochondrial genome of Sinentomon erythranum (Arthropoda: Hexapoda: Protura): an example of highly divergent evolution

Author(s): Chen Wan-Jun | Bu Yun | Carapelli Antonio | Dallai Romano | Li Sheng | Yin Wen-Ying | Luan Yun-Xia
Gallus gallus NEU3 sialidase as model to study protein evolution mechanism based on rapid evolving loops

Author(s): Giacopuzzi Edoardo | Barlati Sergio | Preti Augusto | Venerando Bruno | Monti Eugenio | Borsani Giuseppe | Bresciani Roberto
Role of TRIPTYCHON in trichome patterning in Arabidopsis

Author(s): Pesch Martina | Hülskamp Martin
Identification and characterization of six novel tetraspanins from Schistosoma japonicum

Author(s): Jiang Yanyan | Xu Xindong | Qing Xiaoxing | Pan Weiqing
Protein phosphatase 2a (PP2A) binds within the oligomerization domain of striatin and regulates the phosphorylation and activation of the mammalian Ste20-Like kinase Mst3

Author(s): Gordon Johnthan | Hwang Juyeon | Carrier Karma | Jones Candace | Kern Quiana | Moreno Carlos | Karas Richard | Pallas David
Effect of soya milk on nutritive, antioxidative, reological and textural properties of chocolate produced in a ball mill

Author(s): Zarić Danica B. | Pajin Biljana S. | Rakin Marica B. | Šereš Zita I. | Dokić Ljubica P. | Tomić Jelena M.
TM-MOTIF: an alignment viewer to annotate predicted transmembrane helices and conserved motifs in aligned set of sequences

Author(s): Balasubramanian Nagarathnam | Kannan Sankar | Varadhan Dharnidharka | Veluchamy Balakrishnan | Govindaraju Archunan | Ramanathan Sowdhamini*
Interleukin-2 Functions in Anaplastic Large Cell Lymphoma Cells through Augmentation of Extracellular Signal-Regulated Kinases 1/2 Activation

Author(s): Masanori Ito | Nianxi Zhao | Zihua Zeng | Xiaobo Zhou | Chung-Che Chang | Youli Zu
Functional RNA Elements in the Dengue Virus Genome

Author(s): Leopoldo G. Gebhard | Claudia V. Filomatori | Andrea V. Gamarnik
A Wnt1 regulated Frizzled-1/β-Catenin signaling pathway as a candidate regulatory circuit controlling mesencephalic dopaminergic neuron-astrocyte crosstalk: Therapeutical relevance for neuron survival and neuroprotection

Author(s): L'Episcopo Francesca | Serapide Maria | Tirolo Cataldo | Testa Nunzio | Caniglia Salvatore | Morale Maria | Pluchino Stefano | Marchetti Bianca
Insights from the analysis of conserved motifs and permitted amino acid exchanges in the human, the fly and the worm GPCR clusters

Author(s): Balasubramanian Nagarathnam | Sankar Kannan | Varadhan Dharnidharka | Veluchamy Balakrishnan | Govindaraju Archunan | Ramanathan Sowdhamini*
The Architecture and Complete Sequence of Mitochondrial Genome of an Assassin Bug Agriosphodrus Dohrni (Hemiptera: Reduviidae)

Author(s): Hu Li, Jianyu Gao, Haiyu Liu, Hui Liu, Aiping Liang, Xuguo Zhou, Wanzhi Cai
Crystal structures of Burkholderia cenocepacia dihydropteroate synthase in the apo-form and complexed with the product 7,8-dihydropteroate

Author(s): Morgan Rachel | Batot Gaëlle | Dement Jennifer | Rao Vincenzo | Eadsforth Thomas | Hunter William
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore

Author(s): Knaus Brian | Cronn Richard | Liston Aaron | Pilgrim Kristine | Schwartz Michael
Architectures of archaeal GINS complexes, essential DNA replication initiation factors

Author(s): Oyama Takuji | Ishino Sonoko | Fujino Seiji | Ogino Hiromi | Shirai Tsuyoshi | Mayanagi Kouta | Saito Mihoko | Nagasawa Naoko | Ishino Yoshizumi | Morikawa Kosuke
Selected amino acid mutations in HIV-1 B subtype gp41 are Associated with Specific gp120V3 signatures in the regulation of Co-Receptor usage

Author(s): Dimonte Salvatore | Mercurio Fabio | Svicher Valentina | D'Arrigo Roberta | Perno Carlo-Federico | Ceccherini-Silberstein Francesca
Exon sequence requirements for excision in vivo of the bacterial group II intron RmInt1

Author(s): Barrientos-Durán Antonio | Chillón Isabel | Martínez-Abarca Francisco | Toro Nicolás
Cell-free synthesis of a functional G protein-coupled receptor complexed with nanometer scale bilayer discs

Author(s): Yang Jian-Ping | Cirico Tatiana | Katzen Federico | Peterson Todd | Kudlicki Wieslaw
Transcriptional regulatory program in wild-type and retinoblastoma gene-deficient mouse embryonic fibroblasts during adipocyte differentiation

Author(s): Hakim-Weber Robab | Krogsdam Anne-M | Jørgensen Claus | Fischer Maria | Prokesch Andreas | Bogner-Strauss Juliane | Bornstein Stefan | Hansen Jacob | Madsen Lise | Kristiansen Karsten | Trajanoski Zlatko | Hackl Hubert
Modification of the loops in the ligand-binding site turns avidin into a steroid-binding protein

Author(s): Riihimäki Tiina | Hiltunen Soili | Rangl Martina | Nordlund Henri | Määttä Juha | Ebner Andreas | Hinterdorfer Peter | Kulomaa Markku | Takkinen Kristiina | Hytönen Vesa
Protein kinase D1 (PKD1) activation mediates a compensatory protective response during early stages of oxidative stress-induced neuronal degeneration

Author(s): Asaithambi Arunkumar | Kanthasamy Arthi | Saminathan Hariharan | Anantharam Vellareddy | Kanthasamy Anumantha
Structural and functional basis for RNA cleavage by Ire1

Author(s): Korennykh Alexei | Korostelev Andrei | Egea Pascal | Finer-Moore Janet | Stroud Robert | Zhang Chao | Shokat Kevan | Walter Peter
Molecular interactions between Bos taurus interferon-τ1c and human type I interferon receptor

Author(s): Vishawdeep Singh Jamwal | Gourav Modi | Aman George | Manmohan Singh Chauhan
Sequence and structural analysis of 4SNc-Tudor domain protein from Takifugu Rubripes

Author(s): Jianzhou Zheng | Haijun Liu | Jian Lu | Keping Chen | Jun Li
An in silico approach to primaquine binding to Trp756 in the external vestibule of sodium channel Nav 1.4

Author(s): Scior TF | Islas AA | Martínez-Morales E | Cuanalo-Contreras K | Millan-Perezpeña L | Salinas-Stefanón EM
Interaction of recombinant and native Cav2.3 E-/R-type voltage-gated Ca2+ channels with the molecular chaperone Hsp70

Author(s): Radhakrishnan K | Krieger A | Tevoufouet EE | Dietz GP | Nagel F | Bähr M | Hescheler J | Schneider T

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