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The marrow cell continuum: stochastic determinism.

Author(s): P Quesenberry | M Abedi | M Dooner | G Colvin | F Martin Sanchez-Guijo | J Aliotta | J Pimentel | G Dooner | D Greer | D Demers | P Keaney | A Peterson | L Luo | B Foster
Survivin antiapoptotic gene expression as a prognostic factor in non-small cell lung cancer: in situ hybridization study.

Author(s): B Karczmarek-Borowska | A Filip | J Wojcierowski | A Smoleń | I Pilecka | A Jabłonka
SDF-1 alone and in co-operation with HGF regulates biology of human cervical carcinoma cells.

Author(s): Marcin Majka | Justyna Drukala | Ewa Lesko | Marcin Wysoczynski | Alfred B Jenson | Mariusz Z Ratajczak
Estrogens: a new player in spermatogenesis.

Author(s): Serge Carreau | DorothĂŠe Silandre | Camille Bois | HĂŠlene Bouraima | Isabelle Galeraud-Denis | Christelle Delalande
NBL1 and anillin (ANLN) genes over-expression in pancreatic carcinoma.

Author(s): Marek Olakowski | Tomasz Tyszkiewicz | Michał Jarzab | Robert Król | Małgorzata Oczko-Wojciechowska | Małgorzata Kowalska | Monika Kowal | Grzegorz M Gala | Maciej Kajor | Dariusz Lange | Ewa Chmielik | Elzbieta Gubala | Paweł Lampe | Barbara Jarzab
The GnRH receptor and the response of gonadotrope cells to GnRH pulse frequency code. A story of an atypical adaptation of cell function relying on a lack of receptor homologous desensitization.

Author(s): Raymond Counis | Ghislaine Garrel | Jean-NoĂŤl Laverriere | Violaine Simon | Christian Bleux | Solange Magre | JoĂŤlle Cohen-Tannoudji
CORRELATION OF TUMOUR SUPPRESSOR GENE P53 EXPRESSION WITH MACROSCOPIC MANIFESTATION AND GROWTH PATTERN OF COLORECTAL CANCER

Author(s): Dušica Petrović | Vesna Stanković | Miloš Milosavljević | Vladimir Bulatović
Early Biventricular Molecular Responses to an Acute Myocardial Infarction

Author(s): Cenk Erdal, Gökhan Karakülah, Emel Fermancı, İmge Kunter, Erdem Silistreli, Tülay Canda, Esra Erdal, Hasan Hepaguslar
The First Type III Domain of Fibronectin is Associated with the Expression of Cytokines within the Lung Tumor Microenvironment

Author(s): Mingzhe Zheng, David M. Jones, Carol Horzempa, Aparna Prasad, Paula J. McKeown-Longo
Multi-Parametric Profiling Network Based on Gene Expression and Phenotype Data: A Novel Approach to Developmental Neurotoxicity Testing

Author(s): Reiko Nagano | Hiromi Akanuma | Xian-Yang Qin | Satoshi Imanishi | Hiroyoshi Toyoshiba | Jun Yoshinaga | Seiichiroh Ohsako | Hideko Sone
Protein Kinases and Transcription Factors Activation in Response to UV-Radiation of Skin: Implications for Carcinogenesis

Author(s): César López-Camarillo | Elena Aréchaga Ocampo | Mavil López Casamichana | Carlos Pérez-Plasencia | Elizbeth Álvarez-Sánchez | Laurence A. Marchat
Bioinformatics Tools and Novel Challenges in Long Non-Coding RNAs (lncRNAs) Functional Analysis

Author(s): Letizia Da Sacco | Antonella Baldassarre | Andrea Masotti
Comparing Quantitative Trait Loci and Gene Expression Data

Author(s): Bing Han | Naomi S. Altman | Jessica A. Mong | Laura Cousino Klein | Donald W. Pfaff | David J. Vandenbergh
Transcripts quantification by using in-house made RT-qPCR standards

Author(s): Lucian Negura | Dragos Peptanariu | Anca Negura
Transcripts quantification by using in-house made RT-qPCR standards

Author(s): Lucian Negura | Dragos Peptanariu | Anca Negura
Effective Clustering Algorithms for Gene Expression Data

Author(s): T.Chandrasekhar | K.Thangavel | E.Elayaraja
Identification of a novel TDRD7 isoforms

Author(s): Skorokhod O. M. | Gudkova D. O. | Filonenko V. V.
Immunoreactive neuropeptides in the cells of human thymus

Author(s): Leposavić Gordana | Todorović Vera | Nikolić I. | Perisić Milica
Olmesartan Attenuates the Impairment of Endothelial Cells Induced by Oxidized Low Density Lipoprotein through Downregulating Expression of LOX-1

Author(s): Hua Zhang | Genshan Ma | Yuyu Yao | Huidong Qian | Weizhang Li | Xinjun Chen | Wenlong Jiang | Ruolong Zheng
Study of a Novel Gene Overexpressed in Head & Neck Tumors

Author(s): A Seghatoleslam | B Wasylyk
Study on RIZ1 gene promoter methylation status in human esophageal squamous cell carcinoma

Author(s): Shang-Wen Dong | Peng Zhang | Yi-Mei Liu | Yuan-Tao Cui | Shuo Wang | Shao-Jie Liang | Zhun He | Pei Sun | Yuan-Guo Wang
Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant Polygonum minus via Expressed Sequences Tag (EST) Analysis

Author(s): Nur Diyana Roslan | Jastina Mat Yusop | Syarul Nataqain Baharum | Roohaida Othman | Zeti-Azura Mohamed-Hussein | Ismanizan Ismail | Normah Mohd Noor | Zamri Zainal
Relevant Networks involving the p53 Signalling Pathway in Renal Cell Carcinoma

Author(s): V. Medina Villaamil | G. Aparicio Gallego | I. Santamarina Caínzos | L. Valbuena Ruvira | M. Valladares-Ayerbes | L. M. Antón Aparicio
Variation in Stability of Endogenous Reference Genes in Fallopian Tubes and Endometrium from Healthy and Ectopic Pregnant Women

Author(s): Alpha K. Gebeh | Emma L. Marczylo | Akwasi A. Amoako | Jonathon M. Willets | Justin C. Konje
Identification and Characterization of MicroRNAs from Barley (Hordeum vulgare L.) by High-Throughput Sequencing

Author(s): Shuzuo Lv | Xiaojun Nie | Le Wang | Xianghong Du | Siddanagouda S. Biradar | Xiaoou Jia | Weining Song
The comparison of TH1 and TH2 cytokines gene expression in allergic and non-allergic patients with nasal polyps by PCR

Author(s): Farhadi M | Tabatabaee A | Shekarabi M | Noorbaksh S | Khatib M | Javadinia Sh
T cell responses to der f2 mite allergens in Thai allergic patients

Author(s): Duangthep Thongdee | Jundee Rabablert | Tharit Muninnobpamas | Piyalarp Wasuwat | Rachanoo Pipatchaipaisan | Supathra Tiewchareon | Nat Malainual
Genome-wide integrative analysis revealed a correlation between lengths of copy number segments and corresponding gene expression profile

Author(s): Ken Miyaguchi | Yutaka Fukuoka | Mahmut Yasen | Shota Nemoto | Toshiaki Ishikawa | Hiroyuki Uetake | Shinji Tanaka | Kenichi Sugihara | Shigeki Arii | Hiroshi Tanaka | Hiroshi Mizushima
NETGEM: Network Embedded Temporal GEnerative Model for gene expression data

Author(s): Jethava Vinay | Bhattacharyya Chiranjib | Dubhashi Devdatt | Vemuri Goutham
Evaluation of the effects of a VEGFR-2 inhibitor compound on alanine aminotransferase gene expression and enzymatic activity in the rat liver

Author(s): Fuentealba Carmen | Bera Monali | Jessen Bart | Sace Fred | Stevens Greg | Trajkovic Dusko | Yang Amy | Evering Winston
CGB and GNRH1 expression analysis as a method of tumor cells metastatic spread detection in patients with gynecological malignances

Author(s): Andrusiewicz Mirosław | Szczerba Anna | Wołuń-Cholewa Maria | Warchoł Wojciech | Nowak-Markwitz Ewa | Gąsiorowska Emilia | Adamska Krystyna | Jankowska Anna
A comparison of the functional modules identified from time course and static PPI network data

Author(s): Tang Xiwei | Wang Jianxin | Liu Binbin | Li Min | Chen Gang | Pan Yi
A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.)

Author(s): Hinchliffe Doug | Turley Rickie | Naoumkina Marina | Kim Hee | Tang Yuhong | Yeater Kathleen | Li Ping | Fang David
Gene- or region-based association study via kernel principal component analysis

Author(s): Gao Qingsong | He Yungang | Yuan Zhongshang | Zhao Jinghua | Zhang Bingbing | Xue Fuzhong
Putative cis-regulatory elements in genes highly expressed in rice sperm cells

Author(s): Sharma Niharika | Russell Scott | Bhalla Prem | Singh Mohan
Identification of Phosphoglycerate Kinase 1 (PGK1) as a reference gene for quantitative gene expression measurements in human blood RNA

Author(s): Falkenberg Virginia | Whistler Toni | Murray Janna' | Unger Elizabeth | Rajeevan Mangalathu
Classification of dendritic cell phenotypes from gene expression data

Author(s): Tuana Giacomo | Volpato Viola | Ricciardi-Castagnoli Paola | Zolezzi Francesca | Stella Fabio | Foti Maria
The glutamine synthetase gene family in Populus

Author(s): Castro-Rodríguez Vanessa | García-Gutiérrez Angel | Canales Javier | Avila Concepción | Kirby Edward | Cánovas Francisco
Genome-wide expression assay comparison across frozen and fixed postmortem brain tissue samples

Author(s): Chow Maggie | Li Hai-Ri | Winn Mary | April Craig | Barnes Cynthia | Wynshaw-Boris Anthony | Fan Jian-Bing | Fu Xiang-Dong | Courchesne Eric | Schork Nicholas
IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data

Author(s): Kim Hyunsoo | Bi Yingtao | Pal Sharmistha | Gupta Ravi | Davuluri Ramana
Reference genes for quantitative reverse transcription-polymerase chain reaction expression studies in wild and cultivated peanut

Author(s): Morgante Carolina | Guimarães Patricia | Martins Andressa | Araújo Ana | Leal-Bertioli Soraya | Bertioli David | Brasileiro Ana
Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series

Author(s): Yuan Yuan | Chen Yi-Ping | Ni Shengyu | Xu Augix | Tang Lin | Vingron Martin | Somel Mehmet | Khaitovich Philipp
DNA methylation of SPARC and chronic low back pain

Author(s): Tajerian Maral | Alvarado Sebastian | Millecamps Magali | Dashwood Thomas | Anderson Kathleen | Haglund Lisbet | Ouellet Jean | Szyf Moshe | Stone Laura
CastorDB: a comprehensive knowledge base for Ricinus communis

Author(s): Thakur Shalabh | Jha Sanjay | Chattoo Bharat
Measuring and analyzing tissue specificity of human genes and protein complexes

Author(s): Emig Dorothea | Kacprowski Tim | Albrecht Mario
Analyses of the oligopeptide transporter gene family in poplar and grape

Author(s): Cao Jun | Huang Jinling | Yang Yongping | Hu Xiangyang
Transcriptomes of Frankia sp. strain CcI3 in growth transitions

Author(s): Bickhart Derek | Benson David
Multi-membership gene regulation in pathway based microarray analysis

Author(s): Pavlidis Stelios | Payne Annette | Swift Stephen
Methodology and software to detect viral integration site hot-spots

Author(s): Presson Angela | Kim Namshin | Xiaofei Yan | Chen Irvin | Kim Sanggu
Gene expression profile of the cartilage tissue spontaneously regenerated in vivo by using a novel double-network gel: Comparisons with the normal articular cartilage

Author(s): Imabuchi Ryusei | Ohmiya Yoshihiro | Joon Kwon Hyuck | Onodera Shin | Kitamura Nobuto | Kurokawa Takayuki | Ping Gong Jian | Yasuda Kazunori
A network model for biofilm development in Escherichia coli K-12

Author(s): Shalá Andrew | Restrepo Silvia | González Barrios Andrés
On the Use of MDL Principle in Gene Expression Prediction

Author(s): Tabus Ioan | Astola Jaakko
Members of the murine Pate family are predominantly expressed in the epididymis in a segment-specific fashion and regulated by androgens and other testicular factors

Author(s): Turunen Heikki | Sipilä Petra | Pujianto Dwi | Damdimopoulos Anastasios | Björkgren Ida | Huhtaniemi Ilpo | Poutanen Matti
Bayesian non-negative factor analysis for reconstructing transcription factor mediated regulatory networks

Author(s): Meng Jia | Zhang Jianqiu (Michelle) | Chen Yidong | Huang Yufei
Leveraging domain information to restructure biological prediction

Author(s): Nan Xiaofei | Fu Gang | Zhao Zhengdong | Liu Sheng | Patel Ronak | Liu Haining | Daga Pankaj | Doerksen Robert | Dang Xin | Chen Yixin | Wilkins Dawn
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

Author(s): Wang Ying | Ghaffari Noushin | Johnson Charles | Braga-Neto Ulisses | Wang Hui | Chen Rui | Zhou Huaijun
Analysis of cancer metabolism with high-throughput technologies

Author(s): Markovets Aleksandra | Herman Damir
Predicting gene ontology from a global meta-analysis of 1-color microarray experiments

Author(s): Dozmorov Mikhail | Giles Cory | Wren Jonathan
Association of ADIPOR2 gene variants with cardiovascular disease and type 2 diabetes risk in individuals with impaired glucose tolerance: the Finnish Diabetes Prevention Study

Author(s): Siitonen Niina | Pulkkinen Leena | Lindström Jaana | Kolehmainen Marjukka | Schwab Ursula | Eriksson Johan | Ilanne-Parikka Pirjo | Keinänen-Kiukaanniemi Sirkka | Tuomilehto Jaakko | Uusitupa Matti
Maize microarray annotation database

Author(s): Coetzer Nanette | Myburg Alexander | Berger Dave
Delayed inflammatory mRNA and protein expression after spinal cord injury

Author(s): Byrnes Kimberly | Washington Patricia | Knoblach Susan | Hoffman Eric | Faden Alan
Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: Prediction and validation

Author(s): Datta Moumita | Choudhury Ananyo | Lahiri Ansuman | Bhattacharyya Nitai
An entire exon 3 germ-line rearrangement in the BRCA2 gene: pathogenic relevance of exon 3 deletion in breast cancer predisposition

Author(s): Muller Danièle | Rouleau Etienne | Schultz Inès | Caputo Sandrine | Lefol Cédrick | Bièche Ivan | Caron Olivier | Noguès Catherine | Limacher Jean | Demange Liliane | Lidereau Rosette | Fricker Jean | Abecassis Joseph
Selection of reference genes for qPCR in hairy root cultures of peanut

Author(s): Condori Jose | Nopo-Olazabal Cesar | Medrano Giuliana | Medina-Bolivar Fabricio
Genome-wide identification and characterization of ATP-binding cassette transporters in the silkworm, Bombyx mori

Author(s): Liu Shumin | Zhou Shun | Tian Ling | Guo Enen | Luan Yunxia | Zhang Jianzhen | Li Sheng
caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts

Author(s): Moffitt Richard | Yin-Goen Qiqin | Stokes Todd | Parry R | Torrance James | Phan John | Young Andrew | Wang May
In vitro anti-plasmodial activity of Dicoma anomala subsp. gerrardii (Asteraceae): identification of its main active constituent, structure-activity relationship studies and gene expression profiling

Author(s): Becker John | van der Merwe Marina | van Brummelen Anna | Pillay Pamisha | Crampton Bridget | Mmutlane Edwin | Parkinson Chris | van Heerden Fanie | Crouch Neil | Smith Peter | Mancama Dalu | Maharaj Vinesh
Ortho2ExpressMatrix—a web server that interprets cross-species gene expression data by gene family information

Author(s): Meinel Thomas | Schweiger Michal | Ludewig Andreas | Chenna Ramu | Krobitsch Sylvia | Herwig Ralf
Microarray analysis of genes associated with cell surface NIS protein levels in breast cancer

Author(s): Beyer Sasha | Zhang Xiaoli | Jimenez Rafael | Lee Mei-Ling | Richardson Andrea | Huang Kun | Jhiang Sissy
Gene expression profile of circulating tumor cells in breast cancer by RT-qPCR

Author(s): Strati Areti | Markou Athina | Parisi Cleo | Politaki Eleni | Mavroudis Dimitris | Georgoulias Vasilis | Lianidou Evi
Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda

Author(s): van Soest Joost | Stockhammer Oliver | Ordas Anita | Bloemberg Guido | Spaink Herman | Meijer Annemarie
Quantifying stability in gene list ranking across microarray derived clinical biomarkers

Author(s): Schneckener Sebastian | Arden Nilou | Schuppert Andreas
Nucleosome-coupled expression differences in closely-related species

Author(s): Guan Yuanfang | Yao Victoria | Tsui Kyle | Gebbia Marinella | Dunham Maitreya | Nislow Corey | Troyanskaya Olga
The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing

Author(s): Lowe Chris | Mello Luciane | Samatar Najma | Martin Laura | Montagnes David | Watts Phillip
Gene network analyses point to the importance of human tissue kallikreins in melanoma progression

Author(s): Martins Waleska | Esteves Gustavo | Almeida Otávio | Rezze Gisele | Landman Gilles | Marques Sarah | Carvalho Alex | L Reis Luiz | Duprat João | Stolf Beatriz
Microarray BASICA: Background Adjustment, Segmentation, Image Compression and Analysis of Microarray Images

Author(s): Hua Jianping | Liu Zhongmin | Xiong Zixiang | Wu Qiang | Castleman Kenneth R
Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection

Author(s): Zhou Xiaobo | Wang Xiaodong | Dougherty Edward R
Multicriteria Gene Screening for Analysis of Differential Expression with DNA Microarrays

Author(s): Hero Alfred O | Fleury Gilles | Mears Alan J | Swaroop Anand
The Local Maximum Clustering Method and Its Application in Microarray Gene Expression Data Analysis

Author(s): Wu Xiongwu | Chen Yidong | Brooks Bernard R | Su Yan A
Clustering Time Series Gene Expression Data Based on Sum-of-Exponentials Fitting

Author(s): Giurcăneanu Ciprian Doru | Tăbuş Ioan | Astola Jaakko
gViz, a novel tool for the visualization of co-expression networks

Author(s): Helaers Raphaël | Bareke Eric | De Meulder Bertrand | Pierre Michael | Depiereux Sophie | Habra Naji | Depiereux Eric
Identifying cancer biomarkers by network-constrained support vector machines

Author(s): Chen Li | Xuan Jianhua | Riggins Rebecca | Clarke Robert | Wang Yue
Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function

Author(s): Niu Ao-lei | Wang Yin-qiu | Zhang Hui | Liao Cheng-hong | Wang Jin-kai | Zhang Rui | Che Jun | Su Bing
Chipster: user-friendly analysis software for microarray and other high-throughput data

Author(s): Kallio M Aleksi | Tuimala Jarno | Hupponen Taavi | Klemelä Petri | Gentile Massimiliano | Scheinin Ilari | Koski Mikko | Käki Janne | Korpelainen Eija
Transcriptome map of mouse isochores

Author(s): Arhondakis Stilianos | Frousios Kimon | Iliopoulos Costas | Pissis Solon | Tischler German | Kossida Sophia
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling

Author(s): Rousseau Mathieu | Fraser James | Ferraiuolo Maria | Dostie Josée | Blanchette Mathieu
Effect of L-carnitine on the hepatic transcript profile in piglets as animal model

Author(s): Keller Janine | Ringseis Robert | Priebe Steffen | Guthke Reinhard | Kluge Holger | Eder Klaus
Do-it-yourself: construction of a custom cDNA macroarray platform with high sensitivity and linear range

Author(s): Boonefaes Tom | Houthuys Erica | Van den Bergh Rafael | Vander Beken Seppe | Raes Geert | Brouckaert Peter | De Baetselier Patrick | Grooten Johan
The homology of odontodes in gnathostomes: insights from Dlx gene expression in the dogfish, Scyliorhinus canicula

Author(s): Debiais-Thibaud Mélanie | Oulion Silvan | Bourrat Franck | Laurenti Patrick | Casane Didier | Borday-Birraux Véronique
Transcript profiling reveals expression differences in wild-type and glabrous soybean lines

Author(s): Hunt Matt | Kaur Navneet | Stromvik Martina | Vodkin Lila
Age-related changes in relative expression stability of commonly used housekeeping genes in selected porcine tissues

Author(s): Uddin Muhammad | Cinar Mehmet | Tesfaye Dawit | Looft Christian | Tholen Ernst | Schellander Karl
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

Author(s): Dugas Diana | Monaco Marcela | Olsen Andrew | Klein Robert | Kumari Sunita | Ware Doreen | Klein Patricia
Lack of association between apolipoprotein C3 gene polymorphisms and risk of coronary heart disease in a Han population in East China

Author(s): Yu Juan | Huang Jingjing | Liang Yan | Qin Baodong | He Su | Xiao Jing | Wang Huimin | Zhong Renqian
DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference

Author(s): Jiao Yan | Lawler Katherine | Patel Gargi | Purushotham Arnie | Jones Annette | Grigoriadis Anita | Tutt Andrew | Ng Tony | Teschendorff Andrew
Principal Component Analyses in Anthropological Genetics

Author(s): Xingdong Chen | Chao Chen | Li Jin
Physiological and pathophysiological roles of the electrogenic Na+-HCO3– cotransporter NBCe1

Author(s): George Seki | Hideomi Yamada | Shoko Horita | Masashi Suzuki | Osamu Yamazaki | Wim Van Paesschen | Sung-Sun Yang | Shih-Hua Lin
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