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Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads

Author(s): Duitama Jorge | Kennedy Justin | Dinakar Sanjiv | Hernández Yözen | Wu Yufeng | Măndoiu Ion
Robust joint analysis allowing for model uncertainty in two-stage genetic association studies

Author(s): Pan Dongdong | Li Qizhai | Jiang Ningning | Liu Aiyi | Yu Kai
Genetics of osteoporotic fracture

Author(s): Chuan Qiu | Christopher J Papasian | Hong-Wen Deng | et al
Genome-wide association studies - A summary for the clinical gastroenterologist

Author(s): Espen Melum, Andre Franke, Tom H Karlsen
The clinical utility of gene testing for Alzheimer’s disease

Author(s): Emily R. Atkins | Peter K. Panegyres
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips

Author(s): Ritchie Matthew | Liu Ruijie | Carvalho Benilton | Irizarry Rafael
CCRaVAT and QuTie - enabling analysis of rare variants in large-scale case control and quantitative trait association studies

Author(s): Lawrence Robert | Day-Williams Aaron | Elliott Katherine | Morris Andrew | Zeggini Eleftheria
DRD4 and DAT1 in ADHD: Functional neurobiology to pharmacogenetics

Author(s): Darko Turic | James Swanson | Edmund Sonuga-Barke
Exome localization of complex disease association signals

Author(s): Lehne Benjamin | Lewis Cathryn | Schlitt Thomas
Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study

Author(s): Wineinger Nathan | Patki Amit | Meyers Kristin | Broeckel Ulrich | Gu Charles | Rao DC | Devereux Richard | Arnett Donna | Tiwari Hemant
Lack of association between genetic polymorphisms within DUSP12 - ATF6 locus and glucose metabolism related traits in a Chinese population

Author(s): Hu Cheng | Zhang Rong | Wang Congrong | Ma Xiaojing | Wang Jie | Bao Yuqian | Xiang Kunsan | Jia Weiping
Extraluminal factors contributing to inflammatory bowel disease

Author(s): Arvind Batra | Thorsten Stroh | Britta Siegmund
Immunopathogenesis of inflammatory bowel disease

Author(s): David Q Shih, Stephan R Targan
Ethical issues in human genomics research in developing countries

Author(s): de Vries Jantina | Bull Susan | Doumbo Ogobara | Ibrahim Muntaser | Mercereau-Puijalon Odile | Kwiatkowski Dominic | Parker Michael
Utility of the pooling approach as applied to whole genome association scans with high-density Affymetrix microarrays

Author(s): Schosser Alexandra | Pirlo Katrina | Gaysina Darya | Cohen-Woods Sarah | Schalkwyk Leonard | Elkin Amanda | Korszun Ania | Gunasinghe Cerisse | Gray Joanna | Jones Lisa | Meaburn Emma | Farmer Anne | Craig Ian | McGuffin Peter
A statistical approach to finding overlooked genetic associations

Author(s): Rider Andrew | Siwo Geoffrey | Chawla Nitesh | Ferdig Michael | Emrich Scott
Genetic Inheritance and Genome Wide Association Statistical Test Performance

Author(s): Philip Cooley | Robert Clark | Ralph Folsom | Grier Page
The genetics of breast cancer: risk factors for disease

Author(s): Andrew Collins | Ioannis Politopoulos
Genetic contribution and associated pathophysiology in end-stage renal disease

Author(s): Suraksha Agrawal | SS Agarwal | Sita Naik
The role of IREB2 and transforming growth factor beta-1 genetic variants in COPD: a replication case-control study

Author(s): Chappell Sally | Daly Leslie | Lotya Juzer | Alsaegh Aiman | Guetta-Baranes Tamar | Roca Josep | Rabinovich Roberto | Morgan Kevin | Millar Ann | Donnelly Seamas | Keatings Vera | MacNee William | Stolk Jan | Hiemstra Pieter | Miniati Massimo | Monti Simonetta | O'Connor Clare | Kalsheker Noor
Systematic search for enhancer elements and somatic allelic imbalance at seven low-penetrance colorectal cancer predisposition loci

Author(s): Niittymäki Iina | Tuupanen Sari | Li Yilong | Järvinen Heikki | Mecklin Jukka-Pekka | Tomlinson Ian | Houlston Richard | Karhu Auli | Aaltonen Lauri
A genome-wide association study of serum uric acid in African Americans

Author(s): Charles Bashira | Shriner Daniel | Doumatey Ayo | Chen Guanjie | Zhou Jie | Huang Hanxia | Herbert Alan | Gerry Norman | Christman Michael | Adeyemo Adebowale | Rotimi Charles
Bimodal distribution of RNA expression levels in human skeletal muscle tissue

Author(s): Mason Clinton | Hanson Robert | Ossowski Vicky | Bian Li | Baier Leslie | Krakoff Jonathan | Bogardus Clifton
Evaluation of four novel genetic variants affecting hemoglobin A1c levels in a population-based type 2 diabetes cohort (the HUNT2 study)

Author(s): Hertel Jens | Johansson Stefan | Ræder Helge | Platou Carl | Midthjell Kristian | Hveem Kristian | Molven Anders | Njølstad Pål
A validation of the first genome-wide association study of calcaneus ultrasound parameters in the European Male Ageing Study

Author(s): Roshandel Delnaz | Thomson Wendy | Pye Stephen | Boonen Steven | Borghs Herman | Vanderschueren Dirk | Huhtaniemi Ilpo | Adams Judith | Ward Kate | Bartfai Gyorgy | Casanueva Felipe | Finn Joseph | Forti Gianni | Giwercman Aleksander | Han Thang | Kula Krzysztof | Lean Michael | Pendleton Neil | Punab Margus | Silman Alan | Wu Frederick | Holliday Kate | O'Neill Terence
Information content in genome-wide scans: concordance between patterns of genetic differentiation and linkage mapping associations

Author(s): Wiener Pamela | Edriss Mohammad | Williams John | Waddington David | Law Andrew | Woolliams John | Gutiérrez-Gil Beatriz
Novel human genetic variants associated with extrapulmonary tuberculosis: a pilot genome wide association study

Author(s): Oki Noffisat | Motsinger-Reif Alison | Antas Paulo | Levy Shawn | Holland Steven | Sterling Timothy
Recent human evolution has shaped geographical differences in susceptibility to disease

Author(s): Marigorta Urko | Lao Oscar | Casals Ferran | Calafell Francesc | Morcillo-Suárez Carlos | Faria Rui | Bosch Elena | Serra François | Bertranpetit Jaume | Dopazo Hernán | Navarro Arcadi
The choice of null distributions for detecting gene-gene interactions in genome-wide association studies

Author(s): Yang Can | Wan Xiang | He Zengyou | Yang Qiang | Xue Hong | Yu Weichuan
Gene-gene interaction filtering with ensemble of filters

Author(s): Yang Pengyi | Ho Joshua | Yang Yee | Zhou Bing
Variants in KCNQ1 increase type II diabetes susceptibility in South Asians: A study of 3,310 subjects from India and the US

Author(s): Been Latonya | Ralhan Sarju | Wander Gurpreet | Mehra Narinder | Singh JaiRup | Mulvihill John | Aston Christopher | Sanghera Dharambir
An empirical evaluation of imputation accuracy for association statistics reveals increased type-I error rates in genome-wide associations

Author(s): Almeida Marcio | Oliveira Paulo | Pereira Tiago | Krieger José | Pereira Alexandre
Pathway-based analysis using reduced gene subsets in genome-wide association studies

Author(s): Zhao Jingyuan | Gupta Simone | Seielstad Mark | Liu Jianjun | Thalamuthu Anbupalam
Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Author(s): Liu Shikai | Zhou Zunchun | Lu Jianguo | Sun Fanyue | Wang Shaolin | Liu Hong | Jiang Yanliang | Kucuktas Huseyin | Kaltenboeck Ludmilla | Peatman Eric | Liu Zhanjiang
Recent and historical recombination in the admixed Norwegian Red cattle breed

Author(s): Sodeland Marte | Kent Matthew | Hayes Ben | Grove Harald | Lien Sigbjørn
Accounting for multiple comparisons in a genome-wide association study (GWAS)

Author(s): Johnson Randall | Nelson George | Troyer Jennifer | Lautenberger James | Kessing Bailey | Winkler Cheryl | O'Brien Stephen
Characterization of the association between 8q24 and colon cancer: gene-environment exploration and meta-analysis

Author(s): Hutter Carolyn | Slattery Martha | Duggan David | Muehling Jill | Curtin Karen | Hsu Li | Beresford Shirley | Rajkovic Aleksandar | Sarto Gloria | Marshall James | Hammad Nazik | Wallace Robert | Makar Karen | Prentice Ross | Caan Bette | Potter John | Peters Ulrike
Generation Scotland: Donor DNA Databank; A control DNA resource

Author(s): Kerr Shona | Liewald David | Campbell Archie | Taylor Kerrie | Wild Sarah | Newby David | Turner Marc | Porteous David
The cross-sectional GRAS sample: A comprehensive phenotypical data collection of schizophrenic patients

Author(s): Ribbe Katja | Friedrichs Heidi | Begemann Martin | Grube Sabrina | Papiol Sergi | Kästner Anne | Gerchen Martin | Ackermann Verena | Tarami Asieh | Treitz Annika | Flögel Marlene | Adler Lothar | Aldenhoff Josef | Becker-Emner Marianne | Becker Thomas | Czernik Adelheid | Dose Matthias | Folkerts Here | Freese Roland | Günther Rolf | Herpertz Sabine | Hesse Dirk | Kruse Gunther | Kunze Heinrich | Franz Michael | Löhrer Frank | Maier Wolfgang | Mielke Andreas | Müller-Isberner Rüdiger | Oestereich Cornelia | Pajonk Frank-Gerald | Pollmächer Thomas | Schneider Udo | Schwarz Hans-Joachim | Kröner-Herwig Birgit | Havemann-Reinecke Ursula | Frahm Jens | Stühmer Walter | Falkai Peter | Brose Nils | Nave Klaus-Armin | Ehrenreich Hannelore
Mycobacterium avium subspecies paratuberculosis and its relationship with Crohn’s disease

Author(s): Juan Luis Mendoza, Raquel Lana, Manuel Díaz-Rubio
RS-SNP: a random-set method for genome-wide association studies

Author(s): D'Addabbo Annarita | Palmieri Orazio | Latiano Anna | Annese Vito | Mukherjee Sayan | Ancona Nicola
Alu distribution and mutation types of cancer genes

Author(s): Zhang Wensheng | Edwards Andrea | Fan Wei | Deininger Prescott | Zhang Kun
A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes

Author(s): Hickey John | Kinghorn Brian | Tier Bruce | Wilson James | Dunstan Neil | van der Werf Julius
Six sequence variants on chromosome 9p21.3 are associated with a positive family history of myocardial infarction: a multicenter registry

Author(s): Scheffold Thomas | Kullmann Silke | Huge Andreas | Binner Priska | Ochs Hermann | Schöls Wolfgang | Thale Joachim | Motz Wolfgang | Hegge Franz | Stellbrink Christoph | Dorsel Thomas | Gülker Hartmut | Heuer Hubertus | Dinh Wilfried | Stoll Monika | Haltern Georg
Molecular biology of heart disease

Author(s): Robert Roberts
Molecular biology of heart disease

Author(s): Robert Roberts
Gene-chromosome locations of neuropsychiatric diseases

Author(s): Paul Shapshak | Charurut Somboonwit | John Sinnott | Deborah Commins | Elyse Singer | Andrew Levine
A more rapid approach to systematically assessing published associations of genetic polymorphisms and disease risk: type 2 diabetes as a test case

Author(s): Cho AH | Jiang X | Mann DM | Kawamoto K | Robinson TJ | Wang N | McCarthy JJ | Woodward M | Ginsburg GS
Recent advances in the genetics of atrial fibrillation: from rare and common genetic variants to microRNA signaling

Author(s): Moritz F. Sinner | Sebastian Clauss | Reza Wakili | Thomas Meitinger | Heidi Estner | Stefan Kääb
Genome-wide algorithm for detecting CNV associations with diseases

Author(s): Xu Yaji | Peng Bo | Fu Yunxin | Amos Christopher
Mining for genotype-phenotype relations in Saccharomyces using partial least squares

Author(s): Mehmood Tahir | Martens Harald | Sæbø Solve | Warringer Jonas | Snipen Lars
An integrative approach to ortholog prediction for disease-focused and other functional studies

Author(s): Hu Yanhui | Flockhart Ian | Vinayagam Arunachalam | Bergwitz Clemens | Berger Bonnie | Perrimon Norbert | Mohr Stephanie
Genetic polymorphisms linked to susceptibility to malaria

Author(s): Driss Adel | Hibbert Jacqueline | Wilson Nana | Iqbal Shareen | Adamkiewicz Thomas | Stiles Jonathan
LIN28B, LIN28A, KISS1, and KISS1R in idiopathic central precocious puberty

Author(s): Tommiska Johanna | Sørensen Kaspar | Aksglaede Lise | Koivu Rosanna | Puhakka Lea | Juul Anders | Raivio Taneli
Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits

Author(s): Middelberg Rita | Ferreira Manuel | Henders Anjali | Heath Andrew | Madden Pamela | Montgomery Grant | Martin Nicholas | Whitfield John
Investigation of 95 variants identified in a genome-wide study for association with mortality after acute coronary syndrome

Author(s): Morgan Thomas | House John | Cresci Sharon | Jones Philip | Allayee Hooman | Hazen Stanley | Patel Yesha | Patel Riyaz | Eapen Danny | Waddy Salina | Quyyumi Arshed | Kleber Marcus | März Winfried | Winkelmann Bernhard | Boehm Bernhard | Krumholz Harlan | Spertus John
Comparisons of seven algorithms for pathway analysis using the WTCCC Crohn's Disease dataset

Author(s): Gui Hongsheng | Li Miaoxin | Sham Pak | Cherny Stacey
Snat: a SNP annotation tool for bovine by integrating various sources of genomic information

Author(s): Jiang Jicai | Jiang Li | Zhou Bin | Fu Weixuan | Liu Jian-Feng | Zhang Qin
A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS

Author(s): Richardson Kris | Lai Chao-Qiang | Parnell Laurence | Lee Yu-Chi | Ordovas Jose
Association of genetic variants in chromosome 17q21 and adult-onset asthma in a Chinese Han population

Author(s): Fang QiuRong | Zhao Hailing | Wang Aihua | Gong Yaoqin | Liu Qiji
Replication of LDL GWAs hits in PROSPER/PHASE as validation for future (pharmaco)genetic analyses

Author(s): Trompet Stella | de Craen Anton | Postmus Iris | Ford Ian | Sattar Naveed | Caslake Muriel | Stott David | Buckley Brendan | Sacks Frank | Devlin James | Slagboom P | Westendorp Rudi | Jukema J
Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction

Author(s): Li Chuan-Yun | Zhou Wei-Zhen | Zhang Ping-Wu | Johnson Catherine | Wei Liping | Uhl George
Genome-Wide Association Studies in Myocardial Infarction and Coronary Artery Disease

Author(s): Pier Mannuccio Mannucci | Luca A Lotta | Flora Peyvandi
A strategy analysis for genetic association studies with known inbreeding

Author(s): Cabras Stefano | Castellanos Maria | Biino Ginevra | Persico Ivana | Sassu Alessandro | Casula Laura | del Giacco Stefano | Bertolino Francesco | Pirastu Mario | Pirastu Nicola
QTLRel: an R Package for Genome-wide Association Studies in which Relatedness is a Concern

Author(s): Cheng Riyan | Abney Mark | Palmer Abraham | Skol Andrew
Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels

Author(s): Antoni Guillemette | Oudot-Mellakh Tiphaine | Dimitromanolakis Apostolos | Germain Marine | Cohen William | Wells Philip | Lathrop Mark | Gagnon France | Morange Pierre-Emmanuel | Tregouet David-Alexandre
Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays

Author(s): Gross Arnd | Tönjes Anke | Kovacs Peter | Veeramah Krishna | Ahnert Peter | Roshyara Nab | Gieger Christian | Rueckert Ina-Maria | Loeffler Markus | Stoneking Mark | Wichmann Heinz-Erich | Novembre John | Stumvoll Michael | Scholz Markus
Applications of the pipeline environment for visual informatics and genomics computations

Author(s): Dinov Ivo | Torri Federica | Macciardi Fabio | Petrosyan Petros | Liu Zhizhong | Zamanyan Alen | Eggert Paul | Pierce Jonathan | Genco Alex | Knowles James | Clark Andrew | Van Horn John | Ames Joseph | Kesselman Carl | Toga Arthur
From the Editor

Author(s): Ugur DEMIRAY
Implications of discoveries from genome-wide association studies in current cardiovascular practice

Author(s): Panniyammakal Jeemon | Kerry Pettigrew | Christopher Sainsbury | Dorairaj Prabhakaran | Sandosh Padmanabhan
The role of the fat mass and obesity associated gene (FTO) in breast cancer risk

Author(s): Kaklamani Virginia | Yi Nengjun | Sadim Maureen | Siziopikou Kalliopi | Zhang Kui | Xu Yanfei | Tofilon Sarah | Agarwal Surbhi | Pasche Boris | Mantzoros Christos
SNP-based pathway enrichment analysis for genome-wide association studies

Author(s): Weng Lingjie | Macciardi Fabio | Subramanian Aravind | Guffanti Guia | Potkin Steven | Yu Zhaoxia | Xie Xiaohui
Empirical evaluations of analytical issues arising from predicting HLA alleles using multiple SNPs

Author(s): Zhang Xinyi | Li Shuying | Wang Hongwei | Hansen John | Zhao Lue
A hidden two-locus disease association pattern in genome-wide association studies

Author(s): Yang Can | Wan Xiang | Yang Qiang | Xue Hong | Tang Nelson | Yu Weichuan
The development and characterization of a 60K SNP chip for chicken

Author(s): Groenen Martien | Megens Hendrik-Jan | Zare Yalda | Warren Wesley | Hillier LaDeana | Crooijmans Richard | Vereijken Addie | Okimoto Ron | Muir William | Cheng Hans
Rheumatoid arthritis-associated polymorphisms are not protective against Alzheimer's disease

Author(s): Simmons Christopher | Zou Fanggeng | Younkin Steven | Estus Steven
Qxpak.5: Old mixed model solutions for new genomics problems

Author(s): Pérez-Enciso Miguel | Misztal Ignacy
High quality and quantity Genome-wide germline genotypes from FFPE normal tissue

Author(s): Cannon-Albright Lisa | Cooper Kendal | Georgelas Ann | Bernard Philip
Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast

Author(s): Swamy Krishna | Chu Wen-Yi | Wang Chun-Yi | Tsai Huai-Kuang | Wang Daryi
Buffy coat specimens remain viable as a DNA source for highly multiplexed genome-wide genetic tests after long term storage

Author(s): Mychaleckyj Josyf | Farber Emily | Chmielewski Jessica | Artale Jamie | Light Laney | Bowden Donald | Hou Xuanlin | Marcovina Santica
GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease

Author(s): Aouizerat Bradley | Vittinghoff Eric | Musone Stacy | Pawlikowska Ludmila | Kwok Pui-Yan | Olgin Jeffrey | Tseng Zian
Expression analysis of asthma candidate genes during human and murine lung development

Author(s): Melén Erik | Kho Alvin | Sharma Sunita | Gaedigk Roger | Leeder J Steven | Mariani Thomas | Carey Vincent | Weiss Scott | Tantisira Kelan
Natural selection among Eurasians at genomic regions associated with HIV-1 control

Author(s): Klimentidis Yann | Aissani Brahim | Shriver Mark | Allison David | Shrestha Sadeep
Robustness of genome-wide scanning using archived dried blood spot samples as a DNA source

Author(s): Hollegaard Mads | Grove Jakob | Grauholm Jonas | Kreiner-Møller Eskil | Bønnelykke Klaus | Nørgaard Mette | Benfield Thomas | Nørgaard-Pedersen Bent | Mortensen Preben | Mors Ole | Sørensen Henrik | Harboe Zitta | Børglum Anders | Demontis Ditte | Ørntoft Torben | Bisgaard Hans | Hougaard David
Is Ankyrin a genetic risk factor for psychiatric phenotypes?

Author(s): Gella Alejandro | Segura Mònica | Durany Núria | Pfuhlmann Bruno | Stöber Gerald | Gawlik Micha
Comparison of buccal and blood-derived canine DNA, either native or whole genome amplified, for array-based genome-wide association studies

Author(s): Rincon Gonzalo | Tengvall Katarina | Belanger Janelle | Lagoutte Laetitia | Medrano Juan | André Catherine | Thomas Anne | Lawley Cynthia | Hansen Mark | Lindblad-Toh Kerstin | Oberbauer Anita
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Author(s): Chancerel Emilie | Lepoittevin Camille | Le Provost Grégoire | Lin Yao-Cheng | Jaramillo-Correa Juan | Eckert Andrew | Wegrzyn Jill | Zelenika Diana | Boland Anne | Frigerio Jean-Marc | Chaumeil Philippe | Garnier-Géré Pauline | Boury Christophe | Grivet Delphine | González-Martínez Santiago | Rouzé Pierre | Van de Peer Yves | Neale David | Cervera Maria | Kremer Antoine | Plomion Christophe
Implication of next-generation sequencing on association studies

Author(s): Siu Hoicheong | Zhu Yun | Jin Li | Xiong Momiao
Genome Wide Association Study to predict severe asthma exacerbations in children using random forests classifiers

Author(s): Xu Mousheng | Tantisira Kelan | Wu Ann | Litonjua Augusto | Chu Jen-hwa | Himes Blanca | Damask Amy | Weiss Scott
Evolutionary factors affecting Lactate dehydrogenase A and B variation in the Daphnia pulex species complex

Author(s): Crease Teresa | Floyd Robin | Cristescu Melania | Innes David
Innate and adaptive immunity in inflammatory bowel disease

Author(s): Britta Siegmund | Martin Zeitz
Genetic evidence linking lung cancer and COPD: a new perspective

Author(s): Young RP | Hopkins RJ | Gamble GD | Etzel C | El-Zein R | Crapo JD
The Association between Sporadic Alzheimer’s Disease and the Human ABCA1 and APOE Gene Polymorphisms in Iranian Population

Author(s): HR Khorram Khorshid | E Gozalpour | K Kamali | M Ohadi | M Karimloo | MH Shahhosseiny
Familial aggregation in inflammatory bowel disease: Is it genes or environment?

Author(s): Tiago Nunes | Gionata Fiorino | Silvio Danese | Miquel Sans
Genetics of rheumatoid arthritis: GWAS and beyond

Author(s): McAllister KM | Eyre S | Orozco G
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