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Analyzing Log Files using Data-Mining

Author(s): Marius Mihut
SNAVI: Desktop application for analysis and visualization of large-scale signaling networks

Author(s): Ma'ayan Avi | Jenkins Sherry | Webb Ryan | Berger Seth | Purushothaman Sudarshan | Abul-Husn Noura | Posner Jeremy | Flores Tony | Iyengar Ravi
Darwin Core Based Data Streamlining with DigiMus 2.0

Author(s): Aditya P Kakodkar | Sarika S. Kerkar | Neena S. Varghese | Devanand P. Kavlekar | C. T. Achuthankutty
Automated genome mining for natural products

Author(s): Li Michael | Ung Peter | Zajkowski James | Garneau-Tsodikova Sylvie | Sherman David
Online educational repositories for promoting agricultural knowledge

Author(s): C.I. Costopoulou | M.S. Ntaliani | M.T. Maliappis | R. Georgiades | A.B. Sideridis
Different Uses of an Open Code LMS for Educational Suppor

Author(s): Katerina Georgouli, | Michael Grivas | Persefoni Zahariou
Testing Applications in MANET Environments through Emulation

Author(s): Jorge Hortelano | Juan-Carlos Cano | Carlos T. Calafate | Pietro Manzoni
CASE: a framework for computer supported outbreak detection

Author(s): Cakici Baki | Hebing Kenneth | Grünewald Maria | Saretok Paul | Hulth Anette
An Open Source Approach for Modern Teaching Methods: The Interactive TGUI System

Author(s): Gerlinde Dinges | Alexander Kowarik | Bernhard Meindl | Matthias Templ
Flexible and Secure Access to Computing Clusters

Author(s): Jan Meizner | Maciej Malawski | Marian Bubak
ProbCD: enrichment analysis accounting for categorization uncertainty

Author(s): Vêncio Ricardo ZN | Shmulevich Ilya
The Systems Biology Research Tool: evolvable open-source software

Author(s): Wright Jeremiah | Wagner Andreas
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network

Author(s): Holden Brian | Pinney John | Lovell Simon | Amoutzias Grigoris | Robertson David
Re-searcher: a system for recurrent detection of homologous protein sequences

Author(s): Repšys Valdemaras | Margelevičius Mindaugas | Venclovas Česlovas
explorase: Multivariate Exploratory Analysis and Visualization for Systems Biology

Author(s): Michael Lawrence | Dianne Cook | Eun-Kyung Lee | Heather Babka | Eve Syrkin Wurtele
Jávácska One: Open Source Mobile Games to Revolutionize Education of Programming

Author(s): BÁTFAI Norbert | BÁTFAI Erika | PŠENÁKOVÁ Ildikó
Hystrix, un'applicazione di OJS (Open Journal Systems)

Author(s): Chiara Iacono | Adriano Martinoli | Damiano Preatoni
BIO::Phylo-phyloinformatic analysis using perl

Author(s): Vos Rutger | Caravas Jason | Hartmann Klaas | Jensen Mark | Miller Chase
From Editor

Author(s): Ugur Demiray
OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

Author(s): Quek Lake-Ee | Wittmann Christoph | Nielsen Lars | Krömer Jens
BioNetBuilder2.0: bringing systems biology to chicken and other model organisms

Author(s): Konieczka Jay | Drew Kevin | Pine Alex | Belasco Kevin | Davey Sean | Yatskievych Tatiana | Bonneau Richard | Antin Parker
State of the Art in Parallel Computing with R

Author(s): Markus Schmidberger | Martin Morgan | Dirk Eddelbuettel | Hao Yu | Luke Tierney | Ulrich Mansmann
TinkerCell: modular CAD tool for synthetic biology

Author(s): Chandran Deepak | Bergmann Frank | Sauro Herbert
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis

Author(s): Stocker Gernot | Fischer Maria | Rieder Dietmar | Bindea Gabriela | Kainz Simon | Oberstolz Michael | McNally James | Trajanoski Zlatko
Accessible integration of agriculture, groundwater, and economic models using the Open Modeling Interface (OpenMI): methodology and initial results

Author(s): T. Bulatewicz | X. Yang | J. M. Peterson | S. Staggenborg | S. M. Welch | D. R. Steward
TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data

Author(s): Cuadros-Inostroza Álvaro | Caldana Camila | Redestig Henning | Kusano Miyako | Lisec Jan | Peña-Cortés Hugo | Willmitzer Lothar | Hannah Matthew
Guest Editorial

Author(s): Kun Mean HOU
Dynamic Scheduling of Skippable Periodic Tasks: Issues and Proposals

Author(s): Maryline Silly-Chetto | Audrey Marchand
Guest Editorial

Author(s): Uwe Brinkschulte | Marcello Cinque | Tony Givargis | Stefano Russo
Guest Editorial

Author(s): Fei Yu | Chin-Chen Chang | Jian Shu | Guiping Liao | Guangxue Yue
Accessible integration of agriculture, groundwater, and economic models using the Open Modeling Interface (OpenMI): methodology and initial results

Author(s): T. Bulatewicz | X. Yang | J. M. Peterson | S. Staggenborg | S. M. Welch | D. R. Steward
From Editor

Author(s): Ugur Demiray
Open source challenges for hospital information system (HIS) in developing countries: a pilot project in Mali

Author(s): Bagayoko Cheick-Oumar | Dufour Jean-Charles | Chaacho Saad | Bouhaddou Omar | Fieschi Marius
OptFlux: an open-source software platform for in silico metabolic engineering

Author(s): Rocha Isabel | Maia Paulo | Evangelista Pedro | Vilaça Paulo | Soares Simão | Pinto José | Nielsen Jens | Patil Kiran | Ferreira Eugénio | Rocha Miguel
An open-source software tool for the generation of relaxation time maps in magnetic resonance imaging

Author(s): Messroghli Daniel | Rudolph Andre | Abdel-Aty Hassan | Wassmuth Ralf | Kühne Titus | Dietz Rainer | Schulz-Menger Jeanette
Heterogeneity prevails: the state of clinical trial data management in Europe - results of a survey of ECRIN centres

Author(s): Kuchinke Wolfgang | Ohmann Christian | Yang Qin | Salas Nader | Lauritsen Jens | Gueyffier Francois | Leizorovicz Alan | Schade-Brittinger Carmen | Wittenberg Michael | Voko Zoltán | Gaynor Siobhan | Cooney Margaret | Doran Peter | Maggioni Aldo | Lorimer Andrea | Torres Ferràn | McPherson Gladys | Charwill Jim | Hellström Mats | Lejeune Stéphane
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

Author(s): Pluskal Tomáš | Castillo Sandra | Villar-Briones Alejandro | Orešič Matej
Practical Application of Toxicogenomics for Profiling Toxicant-Induced Biological Perturbations

Author(s): Naoki Kiyosawa | Sunao Manabe | Takashi Yamoto | Atsushi Sanbuissho
Open Source und Kartellrecht

Author(s): Arne Nordmeyer
Open source in biblioteca: how to?

Author(s): Giovanna Frigimelica | Andrea Marchitelli
Open Access all’INGV: Earth-prints e Annals of Geophysics

Author(s): Anna Grazia Chiodetti | Gabriele Ferrara
A Low Cost Concept for Data Acquisition Systems Applied to Decentralized Renewable Energy Plants

Author(s): Sandro C. S. Jucá | Paulo C. M. Carvalho | Fábio T. Brito
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button

Author(s): Swertz Morris | Dijkstra Martijn | Adamusiak Tomasz | van der Velde Joeri | Kanterakis Alexandros | Roos Erik | Lops Joris | Thorisson Gudmundur | Arends Danny | Byelas George | Muilu Juha | Brookes Anthony | de Brock Engbert | Jansen Ritsert | Parkinson Helen
An Overview of Moonlight Applications Test Automation

Author(s): Appasami Govindasamy | Suresh Joseph. K
Online Test Automation for new Generation of Silverlight Web Applications

Author(s): Appasami Govindasamy | Suresh Joseph.K | Annadurai P.
Open Source Approach to Project Management Tools

Author(s): Romeo MARGEA | Camelia MARGEA
YARP: Yet Another Robot Platform

Author(s): Giorgio Metta | Paul Fitzpatrick | Lorenzo Natale
Acropolis: A Fast Protoyping Robotic Application

Author(s): Vincent Zalzal | Raphael Gava | Sousso Kelouwani | Paul Cohen
An Object-Oriented Modeling and Implementation of Spatio-Temporal Knowledge Discovery System

Author(s): K.Venkateswara Rao | A.Govardhan | K.V.Chalapati Rao
Implementation of workflow engine technology to deliver basic clinical decision support functionality

Author(s): Huser Vojtech | Rasmussen Luke | Oberg Ryan | Starren Justin
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

Author(s): Brusniak Mi-Youn | Kwok Sung-Tat | Christiansen Mark | Campbell David | Reiter Lukas | Picotti Paola | Kusebauch Ulrike | Ramos Hector | Deutsch Eric | Chen Jingchun | Moritz Robert | Aebersold Ruedi
Sector spanning agrifood process transparency with Direct Computer Mapping

Author(s): Mónika Varga | Sándor Balogh | Béla Csukás
Bioclipse: an open source workbench for chemo- and bioinformatics

Author(s): Spjuth Ola | Helmus Tobias | Willighagen Egon | Kuhn Stefan | Eklund Martin | Wagener Johannes | Murray-Rust Peter | Steinbeck Christoph | Wikberg Jarl
PASSIM – an open source software system for managing information in biomedical studies

Author(s): Viksna Juris | Celms Edgars | Opmanis Martins | Podnieks Karlis | Rucevskis Peteris | Zarins Andris | Barrett Amy | Neogi Sudeshna | Krestyaninova Maria | McCarthy Mark | Brazma Alvis | Sarkans Ugis
Modeling biochemical transformation processes and information processing with Narrator

Author(s): Mandel Johannes | Fuß Hendrik | Palfreyman Niall | Dubitzky Werner
Toward the automated generation of genome-scale metabolic networks in the SEED

Author(s): DeJongh Matthew | Formsma Kevin | Boillot Paul | Gould John | Rycenga Matthew | Best Aaron
Duke Surgery Patient Safety: an open-source application for anonymous reporting of adverse and near-miss surgical events

Author(s): Pietrobon Ricardo | Lima Raquel | Shah Anand | Jacobs Danny | Harker Matthew | McCready Mariana | Martins Henrique | Richardson William
Open access on a zero budget: a case study of Postcolonial Text

Author(s): John Willinsky | Ranjini Mendis
Technological Evaluation Report 42. Contrasting LMS Marketing Approaches

Author(s): Brian Carriere | Carl Challborn | James Moore | Theodorus Nibourg
From the Editor

Author(s): Ugur Demiray
An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis

Author(s): Stanislaus Romesh | Arthur John | Rajagopalan Balaji | Moerschell Rick | McGlothlen Brian | Almeida Jonas
Archon: A Unified Information Storage and Retrieval System for Lone Archivists, Special Collections Librarians and Curators

Author(s): Scott W. Schwartz | Christopher J. Prom | Christopher A. Rishel | Kyle J. Fox
An open-source framework for large-scale, flexible evaluation of biomedical text mining systems

Author(s): Baumgartner William | Cohen K Bretonnel | Hunter Lawrence
From the Editor

Author(s): Ugur demiray
Integrating open-source technologies to build low-cost information systems for improved access to public health data

Author(s): Yi Qian | Hoskins Richard | Hillringhouse Elizabeth | Sorensen Svend | Oberle Mark | Fuller Sherrilynne | Wallace James
The Management of Manufacturing-Oriented Informatics Systems Using Efficient and Flexible Architectures

Author(s): Constantin Daniel AVRAM | Cecilia CIOLOCA | Laurentiu CIOVICA | Mihai CURTEANU | Mihai GEORGESCU
Efficient Implementation of Fault Prediction in Object-Oriented Systems Based on Conceptual Cohesion of Classes

Author(s): D RATNA GIRI | , T V SUBBARAO | SANGAPU VENKATA APPAJI | P L N RAJU
Open Source Software Reliability Growth Model by Considering Change- Point

Author(s): V. B. Singh | P. K. Kapur | Mashaallah Basirzadeh
GIS Education and Research at Eötvös Loránd University, Faculty of Informatics

Author(s): Roberto Giachetta | István László | István Elek | István Fekete | Dávid Ákos Gera
A new approach of designing Multi-Agent Systems

Author(s): Sara Maalal | Malika Addou
Testing Applications in MANET Environments through Emulation

Author(s): Hortelano Jorge | Cano Juan-Carlos | Calafate CarlosT | Manzoni Pietro
Investigate the Result of Object Oriented Design Software Metrics on Fault-Proneness in Object Oriented Systems: A Case Study

Author(s): Amjan. Shaik | N.Satyanarayana | Mohammed Huzaifa | Nazeer Shaik | Mohd Zainuddin Naveed | S.V.Achuta Rao | C.R.K.Reddy
Remote Reporting in Radiology: characteristics and problems

Author(s): Mehdi Yousefi | Ali Hekmatnia | Afshin Niakan
Collective Intelligence Systems: Classification and Modeling

Author(s): Ioanna Lykourentzou | Dimitrios J. Vergados | Epaminondas Kapetanios | Vassili Loumos
An Investigation of the Relationships between Software Metrics and Defects

Author(s): Pradeep Singh | K. D. Chaudhary | Shrish Verma
Critical Aspects of Modern Open Source Software Technology to Support Emerging Demands

Author(s): Umer Farooq | M. Aqeel Iqbal | Usman Shabbir | Sohail Nazir
Setting up of an Open Source based Private Cloud

Author(s): G R Karpagam | J Parkavi
mmView: a web-based viewer of the mmCIF format

Author(s): Čech Petr | Svozil Daniel
LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine

Author(s): Bath Timothy | Bozdag Selcuk | Afzal Vackar | Crowther Daniel
HTPheno: An image analysis pipeline for high-throughput plant phenotyping

Author(s): Hartmann Anja | Czauderna Tobias | Hoffmann Roberto | Stein Nils | Schreiber Falk
STSE: Spatio-Temporal Simulation Environment Dedicated to Biology

Author(s): Stoma Szymon | Fröhlich Martina | Gerber Susanne | Klipp Edda
Geovisualization of Sub-surface Pipelines: A 3D Approach

Author(s): Abdul-Lateef Balogun | Abdul-Nasir Matori | Dano Umar Lawal
Open Source Programmers' Information Seeking During Software Maintenance

Author(s): Khaironi Y. Sharif | Mohd R. Mokhtar | Jim Buckley
E-Learning System Development using an Open-Source Customization Approach

Author(s): H. Mohammadi | S. A. Monadjemi | P. Moallem | A. A. Olounabadi
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