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Isolation of Iranian Human Papillomavirus Type 16 E6 Gene and Construction of its Cloning Vector

Author(s): Mirshahabi Hesam | Soleimanjahi Hoorieh | Meshkat Zahra | Bamdad Taravat | Hassan Zuhair Moohamad
NGSQC: cross-platform quality analysis pipeline for deep sequencing data

Author(s): Dai Manhong | Thompson Robert | Maher Christopher | Contreras-Galindo Rafael | Kaplan Mark | Markovitz David | Omenn Gil | Meng Fan
Predicting phenotypic traits of prokaryotes from protein domain frequencies

Author(s): Lingner Thomas | Mühlhausen Stefanie | Gabaldón Toni | Notredame Cedric | Meinicke Peter
A novel protein-coding ORF72.2 gene was identified from Marek's disease virus strain CVI988

Author(s): Tian Mingxing | Zhao Yang | Shi Min | Lin Yan | Zou Nianli | Liu Ping | Wen Xintian | Cao Sanjie | Huang Yong
ANDES: Statistical tools for the ANalyses of DEep Sequencing

Author(s): Li Kelvin | Venter Eli | Yooseph Shibu | Stockwell Timothy | Eckerle Lance | Denison Mark | Spiro David | Methé Barbara
Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes

Author(s): Macagno Eduardo | Gaasterland Terry | Edsall Lee | Bafna Vineet | Soares Marcelo | Scheetz Todd | Casavant Thomas | Da Silva Corinne | Wincker Patrick | Tasiemski Aurélie | Salzet Michel
Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

Author(s): Agarwal Ashish | Koppstein David | Rozowsky Joel | Sboner Andrea | Habegger Lukas | Hillier LaDeana | Sasidharan Rajkumar | Reinke Valerie | Waterston Robert | Gerstein Mark
SOPRA: Scaffolding algorithm for paired reads via statistical optimization

Author(s): Dayarian Adel | Michael Todd | Sengupta Anirvan
Major Enzymatic Factors Involved in Bacterial Penicillin Resistance in Burkina Faso

Author(s): Boukare Zeba | Martin Kiendrebeogo | Aline Lamien | Jean-Denis Docquier | Jacques Simpore | Odile Germaine Nacoulma
A Hybrid Classifier for Protein Secondary Structure Prediction

Author(s): Saad Osman Abdalla Subair | Safaai Deris | Mohd Saberi Mohamad
Characterization of Ascochyta as Pathological Species of Pea (Pisum sativum L.) at the North-West of Algeria

Author(s): A. Tadja | M. Youcef Benkada | M. Rickauer | B.S. Bendahmane | M. Benkhelifa
A Simulated Annealing Algorithm for Flexible Job-Shop Scheduling Problem

Author(s): M. Yazdani | M. Gholami | M. Zandieh | M. Mousakhani
Generation, analysis and functional annotation of expressed sequence tags from the sheepshead minnow (Cyprinodon variegatus)

Author(s): Pirooznia Mehdi | Pozhitkov Alexander | Perkins Edward | Deng Youping | Brouwer Marius
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment

Author(s): Lynch Andy | Hadfield James | Dunning Mark | Osborne Michelle | Thorne Natalie | Tavaré Simon
High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus

Author(s): Bettencourt Raul | Pinheiro Miguel | Egas Conceição | Gomes Paula | Afonso Mafalda | Shank Timothy | Santos Ricardo
Cell-specific occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells

Author(s): Martianov Igor | Choukrallah Mohamed-Amin | Krebs Arnaud | Ye Tao | Legras Stephanie | Rijkers Erikjan | Van Ijcken Wilfred | Jost Bernard | Sassone-Corsi Paolo | Davidson Irwin
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development

Author(s): Terrat Sébastien | Peyretaillade Eric | Gonçalves Olivier | Dugat-Bony Eric | Gravelat Fabrice | Moné Anne | Biderre-Petit Corinne | Boucher Delphine | Troquet Julien | Peyret Pierre
Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

Author(s): Laing Chad | Buchanan Cody | Taboada Eduardo | Zhang Yongxiang | Kropinski Andrew | Villegas Andre | Thomas James | Gannon Victor
Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases

Author(s): Guttikonda Satish | Trupti Joshi | Bisht Naveen | Chen Hui | An Yong-Qiang | Pandey Sona | Xu Dong | Yu Oliver
Genomic tools development for Aquilegia: construction of a BAC-based physical map

Author(s): Fang Guang-Chen | Blackmon Barbara | Henry David | Staton Margaret | Saski Christopher | Hodges Scott | Tomkins Jeff | Luo Hong
Genotator: A disease-agnostic tool for genetic annotation of disease

Author(s): Wall Dennis | Pivovarov Rimma | Tong Mark | Jung Jae-Yoon | Fusaro Vincent | DeLuca Todd | Tonellato Peter
Identification of small RNAs in Francisella tularensis

Author(s): Postic Guillaume | Frapy Eric | Dupuis Marion | Dubail Iharilalao | Livny Jonathan | Charbit Alain | Meibom Karin
Clustering metagenomic sequences with interpolated Markov models

Author(s): Kelley David | Salzberg Steven
Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries

Author(s): González Víctor | Rodríguez-Moreno Luis | Centeno Emilio | Benjak Andrej | Garcia-Mas Jordi | Puigdomènech Pere | Aranda Miguel
Whole genome wide expression profiles of Vitis amurensis grape responding to downy mildew by using Solexa sequencing technology

Author(s): Wu Jiao | Zhang Yali | Zhang Huiqin | Huang Hong | Folta Kevin | Lu Jiang
Deciphering the intracellular metabolism of Listeria monocytogenes by mutant screening and modelling

Author(s): Schauer Kristina | Geginat Gernot | Liang Chunguang | Goebel Werner | Dandekar Thomas | Fuchs Thilo
Genetic Quality Control of the Rat Strains at the National Bio Resource Project – Rat

Author(s): Takashi Kuramoto | Satoshi Nakanishi | Ken-ichi Yamasaki | Kenta Kumafuji | Yuichi Sakakibara | Yuki Neoda | Akiko Takizawa | Takehito Kaneko | Mito Otsuki | Ryoko Hashimoto | Birger Voigt | Tomoji Mashimo | Tadao Serikawa
Genetic Aberrations of the K-ras Proto-oncogene in Bladder Cancer in Kashmiri Population

Author(s): Mahoor S. Nanda | A. Syed Sameer | Nidda Syeed | Zaffar A. Shah | mtiyaz Murtaza | Mushtaq A Siddiqi | Arif Ali
Functional Insights from Computational Modeling of Orphan Proteins Expressed in a Microbial Community

Author(s): Korin E. Wheeler | Adam Zemla | Yongqin Jiao | Daniela S. Aliaga Goltsman | Steven W.Singer | Jillian F. Banfi eld | Michael P. Thelen
The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE

Author(s): Molina Carlos | Zaman-Allah Mainassara | Khan Faheema | Fatnassi Nadia | Horres Ralf | Rotter Björn | Steinhauer Diana | Amenc Laurie | Drevon Jean-Jacques | Winter Peter | Kahl Günter
De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

Author(s): Der Joshua | Barker Michael | Wickett Norman | dePamphilis Claude | Wolf Paul
An annotated genetic map of loblolly pine based on microsatellite and cDNA markers

Author(s): Echt Craig | Saha Surya | Krutovsky Konstantin | Wimalanathan Kokulapalan | Erpelding John | Liang Chun | Nelson C
PileLine: a toolbox to handle genome position information in next-generation sequencing studies

Author(s): Glez-Peña Daniel | Gómez-López Gonzalo | Reboiro-Jato Miguel | Fdez-Riverola Florentino | Pisano David
Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes

Author(s): Karatolos Nikos | Pauchet Yannick | Wilkinson Paul | Chauhan Ritika | Denholm Ian | Gorman Kevin | Nelson David | Bass Chris | ffrench-Constant Richard | Williamson Martin
Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

Author(s): Dutta Sutapa | Kumawat Giriraj | Singh Bikram | Gupta Deepak | Singh Sangeeta | Dogra Vivek | Gaikwad Kishor | Sharma Tilak | Raje Ranjeet | Bandhopadhya Tapas | Datta Subhojit | Singh Mahendra | Bashasab Fakrudin | Kulwal Pawan | Wanjari KB | K Varshney Rajeev | Cook Douglas | Singh Nagendra
Identification of Schistosoma mansoni microRNAs

Author(s): Simões Mariana | Lee Jonathan | Djikeng Appolinaire | Cerqueira Gustavo | Zerlotini Adhemar | da Silva-Pereira Rosiane | Dalby Andrew | LoVerde Philip | El-Sayed Najib | Oliveira Guilherme
Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Author(s): Liu Shikai | Zhou Zunchun | Lu Jianguo | Sun Fanyue | Wang Shaolin | Liu Hong | Jiang Yanliang | Kucuktas Huseyin | Kaltenboeck Ludmilla | Peatman Eric | Liu Zhanjiang
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

Author(s): Logacheva Maria | Kasianov Artem | Vinogradov Dmitriy | Samigullin Tagir | Gelfand Mikhail | Makeev Vsevolod | Penin Aleksey
Flexible taxonomic assignment of ambiguous sequencing reads

Author(s): Clemente José | Jansson Jesper | Valiente Gabriel
Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

Author(s): Chutimanitsakun Yada | Nipper Rick | Cuesta-Marcos Alfonso | Cistué Luis | Corey Ann | Filichkina Tanya | Johnson Eric | Hayes Patrick
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence

Author(s): Trost Eva | Ott Lisa | Schneider Jessica | Schröder Jasmin | Jaenicke Sebastian | Goesmann Alexander | Husemann Peter | Stoye Jens | Dorella Fernanda | Rocha Flavia | de Castro Soares Siomar | D'Afonseca Vívian | Miyoshi Anderson | Ruiz Jeronimo | Silva Artur | Azevedo Vasco | Burkovski Andreas | Guiso Nicole | Join-Lambert Olivier | Kayal Samer | Tauch Andreas
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

Author(s): Prosperi Mattia | Prosperi Luciano | Bruselles Alessandro | Abbate Isabella | Rozera Gabriella | Vincenti Donatella | Solmone Maria | Capobianchi Maria | Ulivi Giovanni
Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

Author(s): Abril Josep | Cebrià Francesc | Rodríguez-Esteban Gustavo | Horn Thomas | Fraguas Susanna | Calvo Beatriz | Bartscherer Kerstin | Saló Emili
Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure

Author(s): Cuesta-Marcos Alfonso | Szűcs Péter | Close Timothy | Filichkin Tanya | Muehlbauer Gary | Smith Kevin | Hayes Patrick
A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

Author(s): Schwartz Tonia | Tae Hongseok | Yang Youngik | Mockaitis Keithanne | Van Hemert John | Proulx Stephen | Choi Jeong-Hyeon | Bronikowski Anne
Birt-Hogg-Dubé renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression

Author(s): Klomp Jeff | Petillo David | Niemi Natalie | Dykema Karl | Chen Jindong | Yang Ximing | Sääf Annika | Zickert Peter | Aly Markus | Bergerheim Ulf | Nordenskjöld Magnus | Gad Sophie | Giraud Sophie | Denoux Yves | Yonneau Laurent | Méjean Arnaud | Vasiliu Viorel | Richard Stéphane | MacKeigan Jeffrey | Teh Bin | Furge Kyle
Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi

Author(s): Subramanian Sankar | Huynen Leon | Millar Craig | Lambert David
The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

Author(s): Vincent Bruno | Kaeslin Martha | Roth Thomas | Heller Manfred | Poulain Julie | Cousserans François | Schaller Johann | Poirié Marylène | Lanzrein Beatrice | Drezen Jean-Michel | Moreau Sébastien
Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

Author(s): Reese Justin | Childers Christopher | Sundaram Jaideep | Dickens C Michael | Childs Kevin | Vile Donald | Elsik Christine
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs

Author(s): Kundeti Vamsi | Rajasekaran Sanguthevar | Dinh Hieu | Vaughn Matthew | Thapar Vishal
Comparative genomic analysis of Atlantic salmon, Salmo salar, from Europe and North America

Author(s): Lubieniecki Krzysztof | Jones Stacy | Davidson Evelyn | Park Jay | Koop Ben | Walker Seumas | Davidson William
Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy

Author(s): González Víctor | Benjak Andrej | Hénaff Elizabeth | Mir Gisela | Casacuberta Josep | Garcia-Mas Jordi | Puigdomènech Pere
Association analysis of nine candidate gene polymorphisms in Indian patients with type 2 diabetic retinopathy

Author(s): Balasubbu Suganthalakshmi | Sundaresan Periasamy | Rajendran Anand | Ramasamy Kim | Govindarajan Gowthaman | Perumalsamy Namperumalsamy | Hejtmancik J Fielding
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome

Author(s): Carlos W Nossa, William E Oberdorf, Liying Yang, Jørn A Aas, Bruce J Paster, Todd Z DeSantis, Eoin L Brodie, Daniel Malamud, Michael A Poles, Zhiheng Pei
Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series

Author(s): Blair Matthew | Hurtado Natalia | Chavarro Carolina | Muñoz-Torres Monica | Giraldo Martha | Pedraza Fabio | Tomkins Jeff | Wing Rod
Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

Author(s): Kraus Robert | Kerstens Hindrik | Van Hooft Pim | Crooijmans Richard | Van Der Poel Jan | Elmberg Johan | Vignal Alain | Huang Yinhua | Li Ning | Prins Herbert | Groenen Martien
Characterization of statistical features for plant microRNA prediction

Author(s): Thakur Vivek | Wanchana Samart | Xu Mercedes | Bruskiewich Richard | Quick William | Mosig Axel | Zhu Xin-Guang
ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis

Author(s): Ho Joshua | Bishop Eric | Karchenko Peter | Nègre Nicolas | White Kevin | Park Peter
Treatment of Adsorbable Organic Halides from Recycled Paper Industry Wastewater using a GAC-SBBR Pilot Plant System

Author(s): M.H. Muhamad | S.R.S. Abdullah | A.B. Mohamad | R.A. Rahman | A.A.H. Khadum
Identification and Characterization of MicroRNAs from Barley (Hordeum vulgare L.) by High-Throughput Sequencing

Author(s): Shuzuo Lv | Xiaojun Nie | Le Wang | Xianghong Du | Siddanagouda S. Biradar | Xiaoou Jia | Weining Song
Rola jąder podstawy w regulacji funkcji poznawczych

Author(s): Ilona Laskowska | Edward Jacek Gorzelańczyk
SAMQA: error classification and validation of high-throughput sequenced read data

Author(s): Robinson Thomas | Killcoyne Sarah | Bressler Ryan | Boyle John
A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6

Author(s): Saski Christopher | Feltus Frank | Staton Margaret | Blackmon Barbara | Ficklin Stephen | Kuhn David | Schnell Raymond | Shapiro Howard | Motamayor Juan
EFS shows biallelic methylation in uveal melanoma with poor prognosis as well as tissue-specific methylation

Author(s): Neumann Lisa | Weinhäusel Andreas | Thomas Stefanie | Horsthemke Bernhard | Lohmann Dietmar | Zeschnigk Michael
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica

Author(s): den Bakker Henk | Moreno Switt Andrea | Govoni Gregory | Cummings Craig | Ranieri Matthew | Degoricija Lovorka | Hoelzer Karin | Rodriguez-Rivera Lorraine | Brown Stephanie | Bolchacova Elena | Furtado Manohar | Wiedmann Martin
Nephele: genotyping via complete composition vectors and MapReduce

Author(s): Colosimo Marc | Peterson Matthew | Mardis Scott | Hirschman Lynette
Significance testing in ridge regression for genetic data

Author(s): Cule Erika | Vineis Paolo | De Iorio Maria
The NTD Nanoscope: potential applications and implementations

Author(s): Winters-Hilt Stephen | Horton-Chao Evenie | Morales Eric
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

Author(s): Wang Ying | Ghaffari Noushin | Johnson Charles | Braga-Neto Ulisses | Wang Hui | Chen Rui | Zhou Huaijun
Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

Author(s): Guo Shaogui | Liu Jingan | Zheng Yi | Huang Mingyun | Zhang Haiying | Gong Guoyi | He Hongju | Ren Yi | Zhong Silin | Fei Zhangjun | Xu Yong
Establishing the baseline level of repetitive element expression in the human cortex

Author(s): Tyekucheva Svitlana | Yolken Robert | McCombie W | Parla Jennifer | Kramer Melissa | Wheelan Sarah | Sabunciyan Sarven
The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing

Author(s): Lowe Chris | Mello Luciane | Samatar Najma | Martin Laura | Montagnes David | Watts Phillip
An efficient simulator of 454 data using configurable statistical models

Author(s): Lysholm Fredrik | Andersson Björn | Persson Bengt
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

Author(s): Dugas Diana | Monaco Marcela | Olsen Andrew | Klein Robert | Kumari Sunita | Ware Doreen | Klein Patricia
RNA-Seq improves annotation of protein-coding genes in the cucumber genome

Author(s): Li Zhen | Zhang Zhonghua | Yan Pengcheng | Huang Sanwen | Fei Zhangjun | Lin Kui
Pre-Symptomatic Human Cytomegalovirus Disease Diagnosis in Renal Transplant Recipients by the Virus DNA PCR

Author(s): S Amini-Bavil-Olyaee | F Sabahi | A Firoozan | MH Roustaie | M Karimi Arzenani | R Sarrami- Forooshani | A Adeli | F Mahboudi
Guest Editorial

Author(s): Mohammad M. Banat
Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing

Author(s): Chang Peter | Dunham Joseph | Nuzhdin Sergey | Arbeitman Michelle
EuroPineDB: a high-coverage web database for maritime pine transcriptome

Author(s): Fernández-Pozo Noé | Canales Javier | Guerrero-Fernández Darío | Villalobos David | Díaz-Moreno Sara | Bautista Rocío | Flores-Monterroso Arantxa | Guevara M Ángeles | Perdiguero Pedro | Collada Carmen | Cervera M Teresa | Soto Álvaro | Ordás Ricardo | Cantón Francisco | Avila Concepción | Cánovas Francisco | Claros M Gonzalo
Breakpoint characterization of large deletions in EXT1 or EXT2 in 10 Multiple Osteochondromas families

Author(s): Jennes Ivy | de Jong Danielle | Mees Kirsten | Hogendoorn Pancras | Szuhai Karoly | Wuyts Wim
A strategy analysis for genetic association studies with known inbreeding

Author(s): Cabras Stefano | Castellanos Maria | Biino Ginevra | Persico Ivana | Sassu Alessandro | Casula Laura | del Giacco Stefano | Bertolino Francesco | Pirastu Mario | Pirastu Nicola
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Author(s): Alikhan Nabil-Fareed | Petty Nicola | Ben Zakour Nouri | Beatson Scott
Addressing challenges in the production and analysis of illumina sequencing data

Author(s): Kircher Martin | Heyn Patricia | Kelso Janet
GSV: a web-based genome synteny viewer for customized data

Author(s): Revanna Kashi | Chiu Chi-Chen | Bierschank Ezekiel | Dong Qunfeng
Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts

Author(s): Forde Brian | Neville B | O’ Donnell Michelle | Riboulet-Bisson E | Claesson M | Coghlan Avril | Ross R | O’ Toole Paul
Phylogenetic diversity of dominant bacterial communities during bioremediation of crude oil-polluted soil

Author(s): Chioma B. Chikere | Karen J. Surridge | Thomas E. Cloete | Gideon C. Okpokwasili
Accurate and exact CNV identification from targeted high-throughput sequence data

Author(s): Nord Alex | Lee Ming | King Mary-Claire | Walsh Tom
Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

Author(s): Franssen Susanne | Shrestha Roshan | Bräutigam Andrea | Bornberg-Bauer Erich | Weber Andreas
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

Author(s): Milan Massimo | Coppe Alessandro | Reinhardt Richard | Cancela Leonor | Leite Ricardo | Saavedra Carlos | Ciofi Claudio | Chelazzi Guido | Patarnello Tomaso | Bortoluzzi Stefania | Bargelloni Luca
Association of PGC-1alpha polymorphisms with age of onset and risk of Parkinson's disease

Author(s): Clark Joanne | Reddy Sonika | Zheng Kangni | Betensky Rebecca | Simon David
Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

Author(s): Kaur Sukhjiwan | Cogan Noel | Pembleton Luke | Shinozuka Maiko | Savin Keith | Materne Michael | Forster John
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome

Author(s): Larsen Peter | Sreedasyam Avinash | Trivedi Geetika | Podila Gopi | Cseke Leland | Collart Frank
MicroRNA profiling of rhesus macaque embryonic stem cells

Author(s): Sun Zhenghua | Wei Qiang | Zhang Yanfeng | He Xiechao | Ji Weizhi | Su Bing
BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)

Author(s): Schulte Daniela | Ariyadasa Ruvini | Shi Bujun | Fleury Delphine | Saski Chris | Atkins Michael | deJong Pieter | Wu Cheng-Cang | Graner Andreas | Langridge Peter | Stein Nils
rnaSeqMap: a Bioconductor package for RNA sequencing data exploration

Author(s): Leśniewska Anna | Okoniewski Michał
Identification of SNP and SSR markers in eggplant using RAD tag sequencing

Author(s): Barchi Lorenzo | Lanteri Sergio | Portis Ezio | Acquadro Alberto | Valè Giampiero | Toppino Laura | Rotino Giuseppe
Single nucleotide polymorphism discovery in elite north american potato germplasm

Author(s): Hamilton John | Hansey Candice | Whitty Brett | Stoffel Kevin | Massa Alicia | Van Deynze Allen | De Jong Walter | Douches David | Buell C Robin
Genome-wide prediction of splice-modifying SNPs in human genes using a new analysis pipeline called AASsites

Author(s): Faber Kirsten | Glatting Karl-Heinz | Mueller Phillip | Risch Angela | Hotz-Wagenblatt Agnes
Rapid screening of innate immune gene expression in zebrafish using reverse transcription - multiplex ligation-dependent probe amplification

Author(s): Rotman Janneke | van Gils Walter | Butler Derek | Spaink Herman | Meijer Annemarie
DNACLUST: accurate and efficient clustering of phylogenetic marker genes

Author(s): Ghodsi Mohammadreza | Liu Bo | Pop Mihai
Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis

Author(s): Llorens Franc | Hummel Manuela | Pastor Xavier | Ferrer Anna | Pluvinet Raquel | Vivancos Ana | Castillo Ester | Iraola Susana | Mosquera Ana | González Eva | Lozano Juanjo | Ingham Matthew | Dohm Juliane | Noguera Marc | Kofler Robert | del Río Jose | Bayés Mònica | Himmelbauer Heinz | Sumoy Lauro
ReadDB Provides Efficient Storage for Mapped Short Reads

Author(s): Rolfe P Alexander | Gifford David
An integrated ChIP-seq analysis platform with customizable workflows

Author(s): Giannopoulou Eugenia | Elemento Olivier
Inferring viral quasispecies spectra from 454 pyrosequencing reads

Author(s): Astrovskaya Irina | Tork Bassam | Mangul Serghei | Westbrooks Kelly | Măndoiu Ion | Balfe Peter | Zelikovsky Alex
Genotyping common and rare variation using overlapping pool sequencing

Author(s): He Dan | Zaitlen Noah | Pasaniuc Bogdan | Eskin Eleazar | Halperin Eran
Genotypic prediction of HIV-1 subtype D tropism

Author(s): Raymond Stéphanie | Delobel Pierre | Chaix Marie-Laure | Cazabat Michelle | Encinas Stéphanie | Bruel Patrick | Sandres-Sauné Karine | Marchou Bruno | Massip Patrice | Izopet Jacques
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Author(s): Chancerel Emilie | Lepoittevin Camille | Le Provost Grégoire | Lin Yao-Cheng | Jaramillo-Correa Juan | Eckert Andrew | Wegrzyn Jill | Zelenika Diana | Boland Anne | Frigerio Jean-Marc | Chaumeil Philippe | Garnier-Géré Pauline | Boury Christophe | Grivet Delphine | González-Martínez Santiago | Rouzé Pierre | Van de Peer Yves | Neale David | Cervera Maria | Kremer Antoine | Plomion Christophe
A high-throughput protocol for mutation scanning of the BRCA1 and BRCA2 genes

Author(s): Hondow Heather | Fox Stephen | Mitchell Gillian | Scott Rodney | Beshay Victoria | Wong Stephen | Dobrovic Alexander
Genome subtraction for novel target definition in Salmonella typhi

Author(s): Bhawna Rathi | Nidhi Trivedi | Aditya N. Sarangi
Simulation of Sequencing Rules Using Witness in a Milling Job Shop

Author(s): Liqi Ang | Kuan Yew Wong | Wai Peng Wong
Streptococcus agalactiae: up to date the only pathogenous Streptococcus of cultured tilapias in Colombia Streptococcus agalactiae: HASTA AHORA EL ÚNICO Streptococcus PATÓGENO DE TILAPIAS CULTIVADAS EN COLOMBIA

Author(s): Jiménez Angela | Rey Castaño Alba Lucía | Penagos Giovanny | Ariza Botero Manuel Fernando | Figueroa Ramirez Judith | Iregui Castro Carlos Arturo
Amplification, Sequencing and Phylogenetic Analysis of EF-1a Gene in Apis Family (Hymnoptera: Apidae)

Author(s): M. Suresh Kumar | A.J.A. Ranjit Singh | G. Alagumuthu | K. Jeeva | N. Selvan
Characterization of HIV-1 Genotypes and Antiretroviral Drug-resistance Mutations among Patients in Burkina Faso

Author(s): T.S. Kagone | H. Hien | N. Meda | P.S. Diagbouga | A. Sawadogo | J. Drabo | M. Peeters | L. Vergne | E. Delaporte | C. De Souza | M. Gbeassor | J. Simpore
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