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Bioinformation

ISSN: 0973--2063
Publisher: Biomedical Informatics Publishing Group


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An-Overview on invertase in sugarcane

Author(s): Mohammad Israil Ansari | Ashok Yadav | Ramji Lal
Volume: 9
Issue: 9
Year: 2013
In-silico analysis of caspase-3 and -7 proteases from blood-parasitic Schistosoma species (Trematoda) and their human host

Author(s): Shakti Kumar | Devendra Kumar Biswal | Veena Tandon
Volume: 9
Issue: 9
Year: 2013
Analysis of dimerization of BTB-IVR domains of Keap1 and its interaction with Cul3, by molecular modeling

Author(s): Nandini Chauhan | Lata Chaunsali | Prashant Deshmukh | Balasundaram Padmanabhan
Volume: 9
Issue: 9
Year: 2013
Modeling of the MAPK machinery activation in response to various abiotic and biotic stresses in plants by a system biology approach

Author(s): Rajesh Kumar Pathak | Gohar Taj | Dinesh Pandey | Sandeep Arora | Anil Kumar
Volume: 9
Issue: 9
Year: 2013
PKscan: a program to identify H-type RNA pseudoknots in any RNA sequence with unlimited length

Author(s): Xiaolan Huang | Zhihua Du | Jie Cheng | Qiang Cheng
Volume: 9
Issue: 9
Year: 2013
Insight from βC1 protein model for implication in cotton leaf curl disease

Author(s): Khuram Shahzad | Abdul Hai | Nadeem Kizilbash | Jawaria Ambreen | Jamal Alruwaili
Volume: 9
Issue: 9
Year: 2013
Exploring GpG bases next to anticodon in tRNA subsets

Author(s): Thangavelu Srinivasan | Kubendiran Kumaran | Rajendran Selvakumar | Devadasan Velmurugan | Dorairaj Sudarsanam
Volume: 9
Issue: 9
Year: 2013
Insights from the molecular characterization of mercury stress proteins identified by proteomics in E.coli nissle 1917

Author(s): Panthangi Seshapani | Daddam Jayasimha Rayalu | Vadde Kiran Kumar | Kathera Chandra Sekhar | Jasti Pramoda Kumari
Volume: 9
Issue: 9
Year: 2013
Identification of Penicillin-binding proteins employing support vector machines and random forest

Author(s): Vinay Nair | Monalisa Dutta | Sowmya S Manian | Ramya Kumari S | Valadi K Jayaraman
Volume: 9
Issue: 9
Year: 2013
Fish Karyome: A karyological information network database of Indian Fishes

Author(s): Naresh Sahebrao Nagpure | Ajey Kumar Pathak | Rameshwar Pati | Shri Prakash Singh | Mahender Singh | Uttam Kumar Sarkar | Basdeo Kushwaha | Ravindra Kumar
Volume: 8
Issue: 9
Year: 2012
Towards an understating of signal transduction protein interaction networks

Author(s): Dowluru SVGK Kaladhar | Potladurthi Chandra Sai | Padmanabhuni V Nageswara Rao | Amajala Krishna chaitanya | Duddukuri Govinda Rao | Vadlapudi Varahala Rao | Erva Rajeswara Reddy | Sudabattula Vijaya kumar | Divyakolu Vinod Kumar
Volume: 8
Issue: 9
Year: 2012
Identification and classification of detoxification enzymes from Culex quinquefasciatus (Diptera: Culicidae)

Author(s): BP Niranjan Reddy | B Prasad Rao | GBKS Prasad | K Raghavendra
Volume: 8
Issue: 9
Year: 2012
Identifications small molecules inhibitor of p53-mortalin complex for cancer drug using virtual screening

Author(s): Didik H Utomo | Widodo | M Rifa’i
Volume: 8
Issue: 9
Year: 2012
Structure based virtual screening of novel inhibitors against multidrug resistant superbugs

Author(s): Sinosh Skariyachan | Arpitha Badarinath Mahajanakatti | Narasimha Sharma | Shraddha Karanth | Shruthi Rao | Narayanappa Rajeswari
Volume: 8
Issue: 9
Year: 2012
A Phylogenetic analysis of Heparanase (HPSE) gene

Author(s): Abjal Pasha Shaik | Abbas H Alsaeed | Asma Sultana
Volume: 8
Issue: 9
Year: 2012
Homology Modeling of Coagulase in Staphylococcus aureus

Author(s): Noor Asidah Mohamed | Ruzianisra Mohamed | Teoh Teow Chong
Volume: 8
Issue: 9
Year: 2012
The role of Ca²+ ions in the complex assembling of protein Z and Z-dependent protease inhibitor: A structure and dynamics investigation

Author(s): Zahra Karimi | Sajad Falsafi-Zade | Hamid Galehdari
Volume: 8
Issue: 9
Year: 2012
Uncovering potential Drug Targets for Tuberculosis using Protein Networks

Author(s): Mohana Priya Raman | Sachidanand Singh | Ponnuswamy Renuka Devi | DevadasanVelmurugan
Volume: 8
Issue: 9
Year: 2012
Role of large hydrophobic residues in proteins

Author(s): Veerasamy Jayaraj | Ramamoorthi Suhanya | Marimuthu Vijayasarathy | Perumal Anandagopu | Ekambaram Rajasekaran
Volume: 3
Issue: 9
Year: 2009
Prediction of MHC class I binding peptides using probability distribution functions

Author(s): S. S. Soam | B. N. Mishra | Feroz Khan | B. Bhasker
Volume: 3
Issue: 9
Year: 2009
Abyssinones and related flavonoids as potential steroidogenesis modulators

Author(s): Kaushik S. Hatti | Latha Diwakar | G. Venkateswara Rao | Anil Kush | G. Chandrasekara Reddy
Volume: 3
Issue: 9
Year: 2009
A molecular model for diacylglycerol acyltransferase from Mortierella ramanniana var. angulispora

Author(s): Sanjay Mishra | Surya Prakash Dwivedi | Neeraja Dwivedi | Ajay Kumar | Anil Rawat | Yasushi Kamisaka
Volume: 3
Issue: 9
Year: 2009
A simple approach discriminating cardio-safe drugs from toxic ones

Author(s): Mizied Falah | Taher Nassar | Anwar Rayan
Volume: 3
Issue: 9
Year: 2009
A comparative study on the molecular descriptors for predicting drug-likeness of small molecules

Author(s): Hrishikesh Mishra | Nitya Singh | Tapobrata Lahiri | Krishna Misra
Volume: 3
Issue: 9
Year: 2009
Identification of Comamonas species using 16S rRNA gene sequence

Author(s): Vimlesh Yadav | Satya Prakash | Shipra Srivastava | Anil Kumar Rawat | Praveen Chandra Verma | Vijayta Gupta | Vaishali Basu
Volume: 3
Issue: 9
Year: 2009
Regulatory elements in the 5’region of 16SrRNA gene of Bacillus sp. strain SJ-101

Author(s): Braj R. Singh | Javed Musarrat | Saud A. Alarifi | Abdulaziz A. Al-Khedhairy
Volume: 3
Issue: 9
Year: 2009
A putative nuclear growth factor-like globular nematode specific protein

Author(s): Ranil Samantha Dassanayake | Naduviladath Vishvanath Chandrasekharan | Witharanage Wasana Prasadini Rodrigo | Eric Hamilton Karunanayake | Ovitigala Vithanage Don Sisira Jagathpriya Weerasena
Volume: 3
Issue: 9
Year: 2009
Analysis of protein chameleon sequence characteristics

Author(s): Amine Ghozlane | Agnel Praveen Joseph | Aurelie Bornot | Alexandre G. de Brevern
Volume: 3
Issue: 9
Year: 2009
Nearest-neighbor classifier as a tool for classification of protein families

Author(s): Mona Chaurasiya | Gohel Bakul Chandulal | Krishna Misra | Vivek Kumar Chaurasiya
Volume: 4
Issue: 9
Year: 2010
Computational genome analyses of metabolic enzymes in Mycobacterium leprae for drug target identification

Author(s): Anusuya Shanmugam | Jeyakumar Natarajan
Volume: 4
Issue: 9
Year: 2010
ExSer: A standalone tool to mine protein data bank (PDB) for secondary structural elements

Author(s): Vignesh Dhandapani | Paul Daniel | Raja Natarajan | Balasubramanian Ponnusamy | Arul Loganathan
Volume: 4
Issue: 9
Year: 2010
Analysis of casein alpha S1 & S2 proteins from different mammalian species

Author(s): Tariq Ahmad Masoodi | Gowhar Shafi
Volume: 4
Issue: 9
Year: 2010
Isolation, characterization and structural studies of amorpha – 4, 11-diene synthase (ADS3963) from Arte a L. misia annu

Author(s): Pravej Alam | Usha Kiran2 | M. Mobeen Ahmad | Kamaluddin3 | Mather Ali Khan4 | Shalu Jhanwar M. Z. Abdin
Volume: 4
Issue: 9
Year: 2010
A QSAR study on some series of anti-hepatitis B virus (HBV) agents

Author(s): Preet K. Arora | Satya P. Gupta | Vaishali M. Patil
Volume: 4
Issue: 9
Year: 2010
Lysine richness in human snurps – possible sites for electrophilic attacks

Author(s): Sanjay Kumar Dey | Sayak Ganguli | Abhijit Datta | Paushali Roy | Protip Basu
Volume: 4
Issue: 9
Year: 2010
A ClpP protein model as tuberculosis target for screening marine compounds

Author(s): Abhilasha Tiwari | Smita Gupta | Shipra Srivastava | Rajeev Srivastava | Anil Kumar Rawat
Volume: 4
Issue: 9
Year: 2010
Predictive inference on cytoplasmic and mitochondrial thioredoxin peroxidases in the highly radioresistant Lepidopteran insect Spodoptera frugiperda

Author(s): Shashank Hambarde | Ragothaman M. Yennamalli | Naidu Subbarao | Sudhir Chandna
Volume: 4
Issue: 9
Year: 2010
Fuzzy oil drop model verified positively

Author(s): Mateusz Banach | Katarzyna Prymula1, 3 | Leszek Konieczny1, 4 | Irena Roterman
Volume: 5
Issue: 9
Year: 2011
Structure-based drug design and AutoDock study of potential protein tyrosine kinase inhibitors

Author(s): Hamed Ismail Ali | Tomofumi Nagamatsu | Eiichi Akaho
Volume: 5
Issue: 9
Year: 2011
What to do about data?

Author(s): Martin Gollery
Volume: 5
Issue: 9
Year: 2011
SeqMaT: A sequence manipulation tool for phylogenetic analysis

Author(s): Pavan Kumar Attaluri | Mary C Christman | Zhengxin Chen | Guoqing Lu
Volume: 5
Issue: 9
Year: 2011
Integration of pre-normalized microarray data using quantile correction

Author(s): Takashi Yoneya | Tatsuya Miyazawa
Volume: 5
Issue: 9
Year: 2011
Glaucoma Database

Author(s): Rangachari K | Dhivya M | Eswari Pandaranayaka PJ | Prasanthi N | Sundaresan P | Krishnadas SR | Krishnaswamy S
Volume: 5
Issue: 9
Year: 2011
Can microRNAs act as biomarkers of aging?

Author(s): Luv Kashyap
Volume: 5
Issue: 9
Year: 2011
Functional characterization of novel mutations in Ul54 of ganciclovir resistant HCMV strain using structural analysis

Author(s): Jambulingam Malathi | Vetrivel Umashankar | Ravichandran Sathyabaarathi | Sivashanmugan Muthukumaran | Murali Ishwarya | Hajib Narahari Madhavan
Volume: 5
Issue: 9
Year: 2011
Comparative analysis of epitope predictions: proposed library of putative vaccine candidates for HIV

Author(s): Arun Gupta | Dinesh Chaukiker | Tiratha Raj Singh
Volume: 5
Issue: 9
Year: 2011
Exploiting EST databases for the mining and characterization of short sequence repeat (SSR) markers in Catharanthus roseus L.

Author(s): Raj Kumar Joshi | Basudeba Kar | Sanghamitra Nayak
Volume: 5
Issue: 9
Year: 2011
Identification of membrane associated drug targets in Borrelia burgdorferi ZS7- subtractive genomics approach

Author(s): Shivkumar Madagi | Vijayakumari Mali Patil | Saremy Sadegh | Abhishek Kumar Singh | Bhavana Garwal | Atreyi Banerjee | Usha Talambedu | Biplab Bhattacharjee
Volume: 6
Issue: 9
Year: 2011
Survey and characterization of NBS-LRR (R) genes in Curcuma longa transcriptome

Author(s): Raj Kumar Joshi | Sanghamitra Nayak | Basudeba Kar
Volume: 6
Issue: 9
Year: 2011
Sequence trademarks in oncogene associated microRNAs

Author(s): Sumit Sharma | Sumit Biswas
Volume: 6
Issue: 9
Year: 2011
Analysis of distribution and significance of simple sequence repeats in enteric bacteria Shigella dysenteriae SD197

Author(s): Batwal Saurabh | Sitaraman Sneha | Ranade Suvidya | Khandekar Pramod | Bajaj Shailesh
Volume: 6
Issue: 9
Year: 2011
Computational analysis reveals abundance of potential glycoproteins in Archaea, Bacteria and Eukarya

Author(s): Sadia Zafar | Arshan Nasir | Habib Bokhari
Volume: 6
Issue: 9
Year: 2011
A rapid protein structure alignment algorithm based on a text modeling technique

Author(s): Jafar Razmara1*, | Safaai Deris1, | Sepideh Parvizpour2
Volume: 6
Issue: 9
Year: 2011
3-base periodicity in coding DNA is affected by intercodon dinucleotides

Author(s): Joaquín Sánchez
Volume: 6
Issue: 9
Year: 2011
Molecular docking studies of 1-(substituted phenyl)-3-(naphtha [1, 2-d] thiazol-2-yl) urea/thiourea derivatives with human adenosine A2A receptor

Author(s): Faizul Azam | Medapati Vijaya Vara Prasad | Neelaveni Thangavel | Hamed Ismail Ali
Volume: 6
Issue: 9
Year: 2011
Structure-Activity relationship in mutated pyrazinamidases from Mycobacterium tuberculosis

Author(s): Miguel Quiliano | Andres Hazaet Gutierrez | Robert Hugh Gilman | César López | Wilfredo Evangelista | Jun Sotelo | Patricia Sheen | Mirko Zimic
Volume: 6
Issue: 9
Year: 2011
Selection of predicted siRNA as potential antiviral therapeutic agent against influenza virus

Author(s): Asif Raza | Hira Shareef | Hira Salim | Rashid Khushal | Habib Bokhari
Volume: 6
Issue: 9
Year: 2011
Molecular modeling of DICER and identification of phosphorylation sites

Author(s): Priyanka Dhar* | Abhijit Datta | Sayak Ganguli
Volume: 4
Issue: 9
Year: 2010
SOSUI-GramN: high performance prediction for sub-cellular localization of proteins in Gram-negative bacteria

Author(s): Kenichiro Imai | Naoyuki Asakawa | Toshiyuki Tsuji | Fumitsugu Akazawa | Ayano Ino | Masashi Sonoyama | Shigeki Mitaku
Volume: 2
Issue: 9
Year: 2008
Effect of single nucleotide polymorphisms on Affymetrix® match-mismatch probe pairs

Author(s): Eric Christian Rouchka | Abhijit Waman Phatak | Amar Vir Singh
Volume: 2
Issue: 9
Year: 2008
CoMFA and CoMSIA 3D-QSAR analysis of DMDP derivatives as anti-cancer agents

Author(s): Vivek Srivastava | Ashutosh Kumar | Bhartendu Nath Mishra | Mohammad Imran Siddiqi
Volume: 2
Issue: 9
Year: 2008
Surface characterization of proteins using multi-fractal property of heat-denatured aggregates

Author(s): Tapobrata Lahiri | Hrishikesh Mishra | Subrata Sarkar | Krishna Misra
Volume: 2
Issue: 9
Year: 2008
Evolutionary trace analysis of plant haemoglobins: implications for site-directed mutagenesis

Author(s): Duvvuru muni Rajasekhara Reddy
Volume: 1
Issue: 9
Year: 2007
Physiologic modulation of natural killer cell activity as an index of Alzheimer's disease progression

Author(s): Enzo Grasso | Francesco Chiappelli | Alberto Angeli | Andrea Dovio | Paola Perotti | Marisa Pautasso | Maria Luisa Sartori | Laura Saba | Stefano Mussino | Thomas Fraccalini | Fausto Fantó | Cristina Mocellini | Maria Gabriella Rosso | Enzo Grasso
Volume: 1
Issue: 9
Year: 2007
Cross chromosomal similarity for DNA sequence compression

Author(s): Choi-Ping Paula Wu | Ngai-Fong Law | Wan-Chi Siu
Volume: 2
Issue: 9
Year: 2008
A prognostic model for the combined analysis of gene expression profiling in hepatocellular carcinoma

Author(s): Zee Chung Ying Benny | Lee Jock Wai Jack | Wong Nathalie | Yeo Winnie | Lai Bo San Paul | Mok Shu Kam Tony
Volume: 2
Issue: 9
Year: 2008
PCA-HPR: A principle component analysis model for human promoter recognition

Author(s): Xiaomeng Li | Jia Zeng | Hong Yan
Volume: 2
Issue: 9
Year: 2008
Evolutionary trace analysis at the ligand binding site of laccase

Author(s): Saharuddin Bin Mohamad | Ai Ling Ong | Adiratna Mat Ripen
Volume: 2
Issue: 9
Year: 2008
Comparative genomics - A perspective

Author(s): Selvarajan Sivashankari | Piramanayagam Shanmughavel
Volume: 1
Issue: 9
Year: 2007
An overview on biodiversity information in databases

Author(s): Piramanayagam Shanmughavel
Volume: 1
Issue: 9
Year: 2007
Functional annotation strategy for protein structures

Author(s): Olivia Doppelt | Fabrice Moriaud | Aurélie Bornot | Alexandre G. de Brevern
Volume: 1
Issue: 9
Year: 2007
xGENIA: A comprehensive OWL ontology based on the GENIA corpus

Author(s): Rafal Rak | Lukasz Kurgan | Marek Reformat
Volume: 1
Issue: 9
Year: 2007
An in silico approach to map the binding site of doxorubicin on hemoglobin

Author(s): Shahper Nazeer Khan | Asad Ullah Khan
Volume: 2
Issue: 9
Year: 2008
XYLab: an interactive plotting tool for mixed multivariate data observation and interpretation

Author(s): Matteo Ramazzotti | Elodie Monsellier | Donatella Degl’Innocenti
Volume: 2
Issue: 9
Year: 2008
Your database is obsolete: The promise of contextual bioinformatics

Author(s): Martin Gollery
Volume: 1
Issue: 9
Year: 2007
The role of data mining in turning bio-data into Bioinformation

Author(s): William Perrizo
Volume: 1
Issue: 9
Year: 2007
Design of a set of probes with high potential for influenza virus epidemiological surveillance

Author(s): Luis R Carreño-Durán | V Larios-Serrato | Hueman Jaimes-Díaz | Hilda Pérez-Cervantes | Héctor Zepeda-López | Carlos Javier Sánchez-Vallejo | Gabriela Edith Olguín-Ruiz | Rogelio Maldonado-Rodríguez | Alfonso Méndez-Tenorio
Volume: 9
Issue: 8
Year: 2013
Binding interactions of porphyrin derivatives with Ca2+ ATPase of sarcoplasmic reticulum (SERCA1a)

Author(s): Abdul Hai | Nadeem A. Kizilbash | Syeda Huma H. Zaidiand | Jamal Alruwaili
Volume: 9
Issue: 8
Year: 2013
Molecular signaling cascade of miRNAs in causing Diabetes Nephropathy

Author(s): Dyave Gowda Padmashree | Narayanaswamy Ramachandra Swamy
Volume: 9
Issue: 8
Year: 2013
PathAct: a novel method for pathway analysis using gene expression profiles

Author(s): Kaoru Mogushi | Hiroshi Tanaka
Volume: 9
Issue: 8
Year: 2013
Preimplantation genetic diagnosis in Saudi Arabia

Author(s): Zeinab Abotalib
Volume: 9
Issue: 8
Year: 2013
Interaction of active compounds from Aegle marmelos CORREA with histamine-1 receptor

Author(s): Agung Endro Nugroho | Dany Dwi Agistia | Maulana Tegar | Hari Purnomo
Volume: 9
Issue: 8
Year: 2013
Molecule of the month: miRNA and Parkinson’s disease protein PARK2

Author(s): Paul Shapshak
Volume: 9
Issue: 8
Year: 2013
Aromatic-aromatic interactions: analysis of π-π interactions in interleukins and TNF proteins

Author(s): Vaideeswaran Sivasakthi | Parimelzaghan Anitha | Kalavathi Murugan Kumar | Padmanaban Senthilvel, | Pandian Lavanya | Rayapadi Swetha | Anand Anbarasu | Sudha Ramaiah
Volume: 9
Issue: 8
Year: 2013
Binding mode prediction of biologically active compounds from plant Salvia Miltiorrhiza as integrase inhibitor

Author(s): Nadtanet Nunthaboot | Kiattisak Lugsanangarm | Sirirat Kokpol | Ibrahim S Abd-Elazem
Volume: 9
Issue: 8
Year: 2013
Isolation and characterization of ethanol tolerant yeast strains

Author(s): Chiranjeevi Tikka | Hari Prasad Osuru | Navya Atluri | Praveen Chakravarthi Veera Raghavulu | Nanda Kumar yellapu | Ismail Shaik Mannur | Uppu Venkateswara Prasad | Sudheer Aluru | Narasimha Varma K | Matcha Bhaskar
Volume: 9
Issue: 8
Year: 2013
LIPOPREDICT: Bacterial lipoprotein prediction server

Author(s): S Ramya Kumari | Kiran Kadam | Ritesh Badwaik | Valadi K Jayaraman
Volume: 8
Issue: 8
Year: 2012
MEDDB: A medicinal plant database developed with the information gathered from tribal people in and around Madurai, Tamil Nadu

Author(s): John Asnet Mary | Karuppiah Chandran Priyadharshini | Gurusamy Prabakaran Rubia Amal | Gunasekaran Ramya | Radhakrishnan Nithya | Morkondam Balasubramanian Ambika | Rajaiah Shenbagarathai
Volume: 8
Issue: 8
Year: 2012
HPV-QUEST: A highly customized system for automated HPV sequence analysis capable of processing Next Generation sequencing data set

Author(s): Li Yin | Jiqiang Yao | Brent P Gardner | Kaifen Chang | Fahong Yu | Maureen M Goodenow
Volume: 8
Issue: 8
Year: 2012
3D-QSAR studies on fluroquinolones derivatives as inhibitors for tuberculosis

Author(s): Atanu Bhattacharjee | Baphilinia Jones Mylliemngap | Devadasan Velmurugan
Volume: 8
Issue: 8
Year: 2012
Relevance of systems biological approach in the differential diagnosis of invasive lobular carcinoma & invasive ductal carcinoma

Author(s): PK Ragunath | B Vanaja Reddy | PA Abhinand | Shiek SSJ Ahmed
Volume: 8
Issue: 8
Year: 2012
Comparative QSAR analysis of cyclo-oxygenase2 inhibiting drugs

Author(s): Arumugam Mohanapriya | Dayalan Achuthan
Volume: 8
Issue: 8
Year: 2012
Designing cyclopentapeptide inhibitor as potential antiviral drug for dengue virus ns5 methyltransferase

Author(s): Syarifuddin Idrus | Usman Sumo Friend Tambunan | Ahmad Ardilla Zubaidi
Volume: 8
Issue: 8
Year: 2012
Analysis of aminoacids pattern in receptor tyrosine kinase using Boolean Association Rule

Author(s): Pranjal Kalita | Brindha Senthil Kumar | Soundararajan Krishnaswamy | Senthil Kumar Nachimuthu
Volume: 8
Issue: 8
Year: 2012
Hidden markov model for the prediction of transmembrane proteins using MATLAB

Author(s): Navaneet Chaturvedi* | Vinay Kumar Singh3 | Sudhanshu Shanker2 | Dhiraj Sinha4 | Paras Nath Pandey5
Volume: 7
Issue: 8
Year: 2011
Interaction of ganoderic acid on HIV related target: molecular docking studies

Author(s): Rahmad Akbar* | Wai Keat Yam
Volume: 7
Issue: 8
Year: 2011
Extracting glycan motifs using a biochemically-weighted kernel

Author(s): Hao Jiang | Wai-Ki Ching | Kiyoko F Aoki-Kinoshita*
Volume: 7
Issue: 8
Year: 2011
Morphological and molecular identification of the metacestode parasitizing the liver of rodent hosts in bamboo growing areas of mizoram, northeast India

Author(s): Chenkual Malsawmtluangi | Veena Tandon* | Pramod Kumar Prasad | Devendra Kumar Biswal
Volume: 7
Issue: 8
Year: 2011
Homology modeling of an antifungal metabolite plipastatin synthase from the bacillus subtilis 168

Author(s): Maria Batool | Fauzia Yusuf Hafeez* | Muhammad Nadeem Hassan | Mohammad Hassan Khalid
Volume: 7
Issue: 8
Year: 2011
Identification of potential apicoplast associated therapeutic targets in human and animal pathogen Toxoplasma gondii ME49

Author(s): Sadegh Saremy | Biplab Bhattacharjee* | Mahdi Eskandarian Boroujeni | Jhinuk Chatterjee | Viditi Mittal
Volume: 7
Issue: 8
Year: 2011
Mobility in the structure of E.coli recQ helicase upon substrate binding as seen from molecular dynamics simulations

Author(s): Nishtha Pandey* | Savitha Govardhan | Ravi Kant Pathak
Volume: 7
Issue: 8
Year: 2011
Functional interpretation of APN receptor from the insect M. sexta using structural and modeling studies

Author(s): Anamika Singh | C. V. S. Sivaprasad
Volume: 3
Issue: 8
Year: 2009
sRNATarget: a web server for prediction of bacterial sRNA targets

Author(s): Yuan Cao | Yalin Zhao | Lei Cha | Xiaomin Ying | Ligui Wang | Ningsheng Shao | Wuju Li
Volume: 3
Issue: 8
Year: 2009
NASCENT: An automatic protein interaction network generation tool for non-model organisms

Author(s): Daniel Banky | Rafael Ordog | Vince Grolmusz
Volume: 3
Issue: 8
Year: 2009
UPIC: Perl scripts to determine the number of SSR markers to run

Author(s): Renee S. Arias | Linda L. Ballard | Brian E. Scheffler
Volume: 3
Issue: 8
Year: 2009
PBEAM: A parallel implementation of BEAM for genome-wide inference of epistatic interactions

Author(s): Tao Peng | Pufeng Du | Yanda Li
Volume: 3
Issue: 8
Year: 2009
BatchGenAna: a batch platform for large-scale genomic analysis of mammalian small RNAs

Author(s): Xiaomin Ying | Yanyan Hou | Hua Li | Yalin Zhao | Wuju Li | You Jung Kim | Jignesh M. Patel | Yiqing Mao | Dongsheng Zhao | Xiaolei Wang | Ming Liu
Volume: 3
Issue: 8
Year: 2009
A database for allergenic proteins and bioinformatics tools for allergenicity prediction

Author(s): ChangKug Kim | SooJin Kwon | GangSeob Lee | HwanKi Lee | JiWeon Choi3 | YongHwan Kim | JangHo Hahn
Volume: 3
Issue: 8
Year: 2009
Specific gene hypomethylation and cancer: New insights into coding region feature trends

Author(s): Elias Daura-Oller | Maria Cabre | Miguel A. Montero | Jose L. Paternain | Antoni Romeu
Volume: 3
Issue: 8
Year: 2009
Biomarkers for early detection of high risk cancers: From gliomas to nasopharyngeal carcinoma

Author(s): Francesco Chiappelli | Oluwadayo Oluwadara
Volume: 3
Issue: 8
Year: 2009
Molecular docking studies on quinazoline antifolate derivatives as human thymidylate synthase inhibitors

Author(s): V. Srivastava | S.P.Gupta | M. I. Siddiqi | B.N. Mishra
Volume: 4
Issue: 8
Year: 2010
Genomic adaptation of prokaryotic organisms at high temperature

Author(s): Surajit Basak1 | Pamela Mukhopadhyay2 | Tapash Chandra Ghosh1 | Sanjib Kumar Gupta2
Volume: 4
Issue: 8
Year: 2010
Clustering tendency in the protein fold space

Author(s): Oliviero Carugo
Volume: 4
Issue: 8
Year: 2010
The microarray manual curation tool (MMCT): A Webserver for microarray probe evaluations

Author(s): Dan Tulpan | Luc Belliveau Serge Léger
Volume: 4
Issue: 8
Year: 2010
WebFARM: web server for finite automated restriction mapping

Author(s): Tiratha Raj Singh
Volume: 4
Issue: 8
Year: 2010
Breaking the HxNy outbreak

Author(s): Jayapal Manikandan | Karthik Hemanthakumar | Peter Natesan Pushparaj
Volume: 4
Issue: 8
Year: 2010
Effective feature selection framework for cluster analysis of microarray data

Author(s): Gouchol Pok | Jyh-Charn Steve Liu | Keun Ho Ryu
Volume: 4
Issue: 8
Year: 2010
Modeling of pyruvate decarboxylases from ethanol producing bacteria

Author(s): Anjala Shrestha | Srisuda Dhamwichukorn | Ekachai Jenwitheesuk
Volume: 4
Issue: 8
Year: 2010
Computational discovery of miR-TF regulatory modules in human genome

Author(s): Dang Hung Tran | Kenji Satou | Tu Bao Ho1 | Tho Hoan Pham
Volume: 4
Issue: 8
Year: 2010
A data-mining approach for multiple structural alignment of proteins

Author(s): Wing-Yan Siu | Nikos Mamoulis | Siu-Ming Yiu | Ho-Leung Chan
Volume: 4
Issue: 8
Year: 2010
The Antimicrobial Index: A comprehensive literature-based antimicrobial database and reference work

Author(s): Vafa David Amirkia | Pan Qiubao
Volume: 5
Issue: 8
Year: 2011
Seaweed metabolite database (SWMD): A database of natural compounds from marine algae

Author(s): G Dicky John Davis | A Hannah Rachel Vasanthi
Volume: 5
Issue: 8
Year: 2011
DNABIT Compress-Genome Compression Algorithm

Author(s): Pothuraju Rajarajeswari | Allam Apparao
Volume: 5
Issue: 8
Year: 2011
Structure based prediction of functional sites with potential Inhibitors to Nudix enzymes from disease causing microbes

Author(s): Ashwani Sharma | Ashish Vijay Tendulkar | Pramod Prabhakar Wangikar
Volume: 5
Issue: 8
Year: 2011
Analysis of osmotin, a PR protein as metabolic modulator in plants

Author(s): Malik Zainul Abdin | Usha Kiran | Afshar Alam
Volume: 5
Issue: 8
Year: 2011
Molecular docking analysis of new generation cephalosporins interactions with recently known SHV-variants

Author(s): Asad Ullah Khan | Mohd Hassan Baig | Gulshan Wadhwa
Volume: 5
Issue: 8
Year: 2011
Insights from molecular modeling and dynamics simulation of pathogen resistance (R) protein from brinjal

Author(s): Dipty Shrivastava | Vikrant Nain | Shakti Sahi | Anju Verma | Prakash Chand Sharma | Priyanka Sharma | Polumetla Ananda Kumar
Volume: 5
Issue: 8
Year: 2011
A gp63 based vaccine candidate against Visceral Leishmaniasis

Author(s): Sukrat Sinha | Shanthy Sundaram | Anand Prakash Singh | Ashutosh Tripathi
Volume: 5
Issue: 8
Year: 2011
Strand 6B deformation and residues exposure towards N-terminal end of helix B during proteinase inhibition by Serpins

Author(s): Poonam Singh | Mohamad Aman Jairajpuri
Volume: 5
Issue: 8
Year: 2011
Structural insights into the binding of MMP9 inhibitors

Author(s): Arpit Tandon | Siddharth Sinha
Volume: 5
Issue: 8
Year: 2011
Allotment of carbon is responsible for disorders in proteins

Author(s): Ekambaram Rajasekaran | Kannaiyan Akila | Marimuthu Vijayasarathy
Volume: 6
Issue: 8
Year: 2011
Evidences of lateral gene transfer between archaea and pathogenic bacteria

Author(s): Habib Bokhari | Maryam Anwar | Hasan Bilal Mirza | Patrick Martin Gillevet
Volume: 6
Issue: 8
Year: 2011
Annotation of hypothetical proteins orthologous in Pongo abelii and Sus scrofa

Author(s): Singh Jitendra | Ranjana Narula | Shefali Agnihotri | Maneet Singh
Volume: 6
Issue: 8
Year: 2011
Internal force field in proteins seen by divergence entropy

Author(s): Damian Marchewka | Mateusz Banach | Irena Roterman
Volume: 6
Issue: 8
Year: 2011
Mutation and docking studies on NS2b-NS3 complex from yellow fever virus towards drug discovery

Author(s): Prabhavathy Kannappan | SundaraBaalaji Narayanan
Volume: 6
Issue: 8
Year: 2011
Three dimensional modeling of C-terminal loop of CssA subunit in CS6 of Enterotoxigenic Escherichia coli and its interaction with the 70 KDa domain of Fibronectin

Author(s): Raghunath Chatterjee | Abhisek Ghosal | Subrata Sabui | Nabendu Sekhar Chatterjee
Volume: 6
Issue: 8
Year: 2011
Structural prediction and comparative docking studies of psychrophilic ß- Galactosidase with lactose, ONPG and PNPG against its counter parts of mesophilic and thermophilic enzymes

Author(s): Ponnada Suresh Kumar | KK Pulicherla | Mrinmoy Ghosh | Anmol Kumar | KRS Sambasiva Rao
Volume: 6
Issue: 8
Year: 2011
Structure prediction and functional characterization of secondary metabolite proteins of Ocimum

Author(s): Sudeep Roy | Nidhi Maheshwari | Rashi Chauhan | Naresh Kumar Sen | Ashok Sharma
Volume: 6
Issue: 8
Year: 2011
VPDB: Viral Protein Structural Database

Author(s): Om Prakash Sharma | Ankush Jadhav | Afzal Hussain | Muthuvel Suresh Kumar
Volume: 6
Issue: 8
Year: 2011
Computational identification of miRNAs in medicinal plant Senecio vulgaris (Groundsel)

Author(s): Sarika Sahu | Anjana Khushwaha | Rekha Dixit
Volume: 7
Issue: 8
Year: 2011
Computational identification of composite regulatory sites in 16s-rRNA gene promoters of Mycobacterium species

Author(s): Neeraja Dwivedi1, , and , * | Surya Prakash Dwivedi | Ajay kumar | Vishwa Mohan Katoch | Sanjay Mishra
Volume: 2
Issue: 8
Year: 2008
Alzheimer's disease and HIV associated dementia related genes: I. location and function

Author(s): Paul Shapshak | Hector E. Rodriguez | Rajarathinam Kayathri | Andrew Levine | Francesco Chiappelli | Alireza Minagar
Volume: 2
Issue: 8
Year: 2008
PlantGI: a database for searching gene indices in agricultural plants developed at NIAB, Korea

Author(s): Chang Kug Kim | Ji Weon Choi | DongSuk Park | Man Jung Kang | Young-Joo Seol | Do Yoon Hyun | Jang Ho Hahn
Volume: 2
Issue: 8
Year: 2008
Functional insight for β-glucuronidase in Escherichia coli and Staphylococcus sp. RLH1

Author(s): Loganathan Arul | George Benita | Ponnusamy Balasubramanian
Volume: 2
Issue: 8
Year: 2008
CpGIF: an algorithm for the identification of CpG islands

Author(s): Sujuan Ye | Asai Asaithambi | Yunkai Liu
Volume: 2
Issue: 8
Year: 2008
Oncomirs: The potential role of non-coding microRNAs in understanding cancer

Author(s): Jayapal Manikandan | Joseph Jude Aarthi | Srinivasan Dinesh Kumar | Peter Natesan Pushparaj
Volume: 2
Issue: 8
Year: 2008
Virtual screening for novel COX-2 inhibitors using the ZINC database

Author(s): Kotaprolu Naga Sudha | Mohammed Shakira | Paturi Prasanthi | Nalla Sarika | Ch Narasimha Kumar | Padavala Ajay Babu
Volume: 2
Issue: 8
Year: 2008
HapMap filter 1.0: A tool to preprocess the HapMap genotypic data for association studies

Author(s): Wei Zhang | Shiwei Duan | M. Eileen Dolan
Volume: 2
Issue: 8
Year: 2008
Functional annotation of hypothetical proteins – A review

Author(s): Selvarajan Sivashankari | Piramanayagam Shanmughavel
Volume: 1
Issue: 8
Year: 2006
The next meta-challenge for Bioinformatics

Author(s): Willy Valdivia Granda
Volume: 2
Issue: 8
Year: 2008
PyDeT, a PyMOL plug-in for visualizing geometric concepts around proteins

Author(s): Rafael Ordog
Volume: 2
Issue: 8
Year: 2008
New measures of topological stability in phylogenetic trees – Taking taxon composition into account

Author(s): Dirk Krüger | Andrea Gargas
Volume: 1
Issue: 8
Year: 2006
Adaptive molecular evolution of virulence genes of avian influenza - A virus subtype H5N1: An analysis of host radiation

Author(s): Rocky Kumar | Partho Halder | Raju Poddar
Volume: 1
Issue: 8
Year: 2006
Molecular drug targets and structure based drug design: A holistic approach

Author(s): Shailza Singh | Balwant Kumar Malik | Durlabh Kumar Sharma
Volume: 1
Issue: 8
Year: 2006
Paradigm development: Comparative and predictive 3D modeling of HIV-1 Virion Infectivity Factor (vif)

Author(s): Balaji S | Kalpana R | Shapshak P
Volume: 1
Issue: 8
Year: 2006
Combining algorithms to predict Bacterial protein sub-cellular location: Parallel versus Concurrent implementations

Author(s): Paul D. Taylor | Teresa K. Attwood | Darren R. Flower
Volume: 1
Issue: 8
Year: 2006
Toward bacterial protein sub-cellular location prediction: single-class discrimminant models for all Gram- and Gram+ compartments

Author(s): Paul D. Taylor | Teresa K. Attwood | Darren R. Flower
Volume: 1
Issue: 8
Year: 2006
Salivary biomarkers in psychobiological medicine

Author(s): Francesco Chiappelli | Francisco Javier Iribarren | Paolo Prolo
Volume: 1
Issue: 8
Year: 2006
Lead identification and optimization of novel collagenase inhibitors; pharmacophore and structure based studies

Author(s): Sukesh Kalva | S Vadivelan | Ramadevi Sanam | Sarma ARP Jagarlapudi | Lilly M Saleena
Volume: 8
Issue: 7
Year: 2012
Disseminating the Best Available Evidence: New Challenges in Public Reporting of Health Care

Author(s): André Barkhordarian | Manisha H Ramchandani | Mahsa Dousti | Lauren Kelly-Gleason | Francesco Chiappelli
Volume: 8
Issue: 7
Year: 2012
VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program

Author(s): Sajad Falsafi-Zadeh | Zahra Karimi | Hamid Galehdari
Volume: 8
Issue: 7
Year: 2012
Comparative modeling of CCRL1, a key protein in masked immune diseases and virtual screening for finding inhibitor of this protein

Author(s): Mohaddeseh Behjati | Ibrahim Torktaz | Mehrdad Mohammadpour | Gholamreza Ahmadian | Andrew J Easton
Volume: 8
Issue: 7
Year: 2012
Receptor modification as a therapeutic approach against viral diseases

Author(s): Rabia Farid, | Mohammad Haroon Khan | Hamid Rashid
Volume: 8
Issue: 7
Year: 2012
Isolation and characterization of protease producing bacteria from upper respiratory tract of wild chicken

Author(s): Sangeeta Raut | Sudip Kumar Sen | Naveed Alam Kabir | Soumya Satpathy | Smita Raut
Volume: 8
Issue: 7
Year: 2012
Virtual screening and in vitro assay of potential drug like inhibitors from spices against Glutathione-S-Transferase of Meloidogyne incognita

Author(s): Rosana O Babu | Dinsha Moorkoth | Shamina Azeez | Santhosh J Eapen
Volume: 8
Issue: 7
Year: 2012
Sequence and structure based assessment of non-synonymous SNPs in hypertrichosis universalis

Author(s): Rabiya Waheed | Mohammad Haroon Khan | Raisa Bano | Hamid Rashid
Volume: 8
Issue: 7
Year: 2012
Categorization of metabolome in bacterial systems

Author(s): Shweta Kolhi | A S Kolaskar
Volume: 8
Issue: 7
Year: 2012
HORIBALFRE program: Higher Order Residue Interactions Based ALgorithm for Fold REcognition

Author(s): Pandurangan Sundaramurthy | Raashi Sreenivasan | Khader Shameer | Sunita Gakkhar | Ramanathan Sowdhamini
Volume: 7
Issue: 7
Year: 2011
Microsatellites in palm (Arecaceae) sequences

Author(s): Manju Kalathil Palliyarakkal | Manimekalai Ramaswamy | Arunachalam Vadivel
Volume: 7
Issue: 7
Year: 2011
Integrative analyses of conserved WNT clusters and their co-operative behaviour in human breast cancer

Author(s): Qurrat-ul-Ain | Umair Seemab | Sulaman Nawaz | Sajid Rashid*
Volume: 7
Issue: 7
Year: 2011
Predicting the possibility of two newly isolated phenetheren ring containing compounds from Aristolochia manshuriensis as CDK2 inhibitors

Author(s): Ali Abdullah Alshatwi* | Tarique Noorul Hasan | Gowhar Shaf | Naveed Ahmed Syed
Volume: 7
Issue: 7
Year: 2011
Optimization of Benzoisothiazole dioxide inhibitory activity of the NS5B polymerase of HCV genotype 4 using ligand-steered homological modeling, reaction-driven scaffold-hopping and E-novo workflow

Author(s): Amr Hamed Mahmoud* | Khaled Abouzid Mohamed Abouzid | Dalal Abd El Rahman Abou El Ella | Mohamed Abdel Hamid Ismail
Volume: 7
Issue: 7
Year: 2011
Glycation of calmodulin binding domain of iNOS may increase the chance of occurrence of tuberculosis in chronic diabetic state

Author(s): Rajasri Bhattacharyya* | Dibyajyoti Banerjee
Volume: 7
Issue: 7
Year: 2011
Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase

Author(s): Vikas Kaushik | Tapobrata Lahiri* | Shantiswaroop Singha | Anjan Kumar Dasgupta | Hrishikesh Mishra | Upendra Kumar | Rajeev Kumar
Volume: 7
Issue: 7
Year: 2011
Computational Epigenetics: the new scientific paradigm

Author(s): Shen Jean Lim | Tin Wee Tan | Joo Chuan Tong
Volume: 4
Issue: 7
Year: 2010
Metabolic pathway reconstruction of eugenol to vanillin bioconversion in Aspergillus niger

Author(s): Suchita Srivastava | Suaib Luqman | Mahendra P. Darokar | Feroz Khan | Chandan S. Chanotiya
Volume: 4
Issue: 7
Year: 2010
Interaction modes at protein hetero-dimer interfaces

Author(s): Ayyappan Vaishnavi | Gopichandran Sowmya | Selvarajan Ilakya | Jayaseelan Kalaivanii1,3 | Uma Kangueane1 | Pandjassarame Kangueane
Volume: 4
Issue: 7
Year: 2010
A HLA-DRB supertype chart with potential overlapping peptide binding function

Author(s): Satish Nandagond | Uma Kangueane | Arumugam Mohanapriya | Pandjassarame Kangueane | Paul Shapshak
Volume: 4
Issue: 7
Year: 2010
Virtual screening of AmpC/β-lactamase as target for antimicrobial resistance in Pseudomonas aeruginosa

Author(s): Rohit Farmer | Budhayash Gautam | Satendra Singh | Pramod Kumar Yadav | Prashant Ankur Jain
Volume: 4
Issue: 7
Year: 2010
Identification and modeling of a drug target for Clostridium perfringens SM101

Author(s): Gagan Chhabra | Avishek Anant | Sachin Deshmukh | Himani Kaushik | Pramila Sharma | Keshav Gopal | Nutan Srivastava | Lalit C. Garg
Volume: 4
Issue: 7
Year: 2010
A database for inborn errors of metabolism in the Indian state of Andhra Pradesh

Author(s): Shaik Abdul Latheef
Volume: 4
Issue: 7
Year: 2010
FAIR: A server for internal sequence repeats

Author(s): Ramaswamy Senthilkumar | Narayanan Chidambarathanu | Radhakrishnan Sabarinathan | Nirjhar Banerjee | Bazil Shaahul Hameed | Rajadurai Karthik | Kanagaraj Seka
Volume: 4
Issue: 7
Year: 2010
Biomaterials for the programming of cell growth in oral tissues: The possible role of APA

Author(s): Marco Salerno | Luca Giacomelli | Claudio Larosa
Volume: 5
Issue: 7
Year: 2011
The role of the microenvironment in tumor immune surveillance

Author(s): Oluwadayo Oluwadara | Luca Giacomelli | Xenia Brant | Russell Christensen4 | George Kossan | Raisa Avezova | Francesco Chiappelli
Volume: 5
Issue: 7
Year: 2011
Proteomic signature of Temporomandibular Joint Disorders (TMD): Toward diagnostically predictive biomarkers

Author(s): Garabed Gary Demerjian | Anothony Benjamin Sims | Brendan Curran Stack
Volume: 5
Issue: 7
Year: 2011
Epigenetic regulation of osteogenesis: human embryonic palatal mesenchymal cells

Author(s): Andre Barkhordarian | Jay Sison | Riana Cayabyab | Nicole Mahanian | Francesco Chiappelli
Volume: 5
Issue: 7
Year: 2011
Proteomics as it pertains to oral pathologies and dental research

Author(s): Francesco Chiappelli | Ugo Covani | Luca Giacomelli
Volume: 5
Issue: 7
Year: 2011
The dental informatics online community

Author(s): Jeannie Irwin | Titus Schleyer | Heiko Spallek
Volume: 5
Issue: 7
Year: 2011
Toward multimodality oral cancer diagnosis in the XXI century: Blending cutting edge imaging and genomic/proteomic definition of suspicious lesions

Author(s): Anh D Le | Diana V Messadi | Joel B Epstein | Petra Wilder-Smith
Volume: 5
Issue: 7
Year: 2011
Proteomic signature of periodontal disease in pregnancy: Predictive validity for adverse outcomes

Author(s): Manisha Ramchandani | Muniza Siddiqui | Raveena Kanwar | Manwinder Lakha | Linda Phi | Luca Giacomelli | Francesco Chiappelli
Volume: 5
Issue: 7
Year: 2011
Transforming scientific evidence into better consumer choices

Author(s): Janet G Bauer | Francesco Chiappelli
Volume: 5
Issue: 7
Year: 2011
Proteomics and its applications for biomarker discovery in human saliva

Author(s): Hua Xiao | David T Wong
Volume: 5
Issue: 7
Year: 2011
MAP Kinase analyser: A tool for plant kinase and substrate analysis

Author(s): Saranga Dhar Samantaray | Parvendra Singh | Bonthla Venkata Suresh | Sugandha Sharma | Gohar Taj | Anil Kumar
Volume: 6
Issue: 7
Year: 2011
OntoVisT: A general purpose Ontological Visualization Tool

Author(s): Alok Kumar Srivastava | Narinder Singh Sahni
Volume: 6
Issue: 7
Year: 2011
Characterization of Lovastatin biosynthetic cluster proteins in Aspergillus terreus strain ATCC 20542

Author(s): Thankaswamy Kosalai Subazini | Gopal Ramesh Kumar
Volume: 6
Issue: 7
Year: 2011
Population coverage analysis of T-Cell epitopes of Neisseria meningitidis serogroup B from Iron acquisition proteins for vaccine design

Author(s): Namrata Misra | Prasanna Kumar Panda | Kavita Shah | Lala Bihari Sukla | Priyanka Chaubey
Volume: 6
Issue: 7
Year: 2011
Computer aided screening of inhibitors to 5-a reductase type 2 for prostate cancer

Author(s): Biplab Bhattacharjee | Usha Talambedu | Saremy Sadegh | Arvind Kumar Goyal | Veena Pande | Madhugiri Bhujangarao Nagaveni | Vijayakumari Mali Patil | Joshi Jayadev | Sushil Kumar Middha
Volume: 6
Issue: 7
Year: 2011
Molecular basis of antigenic drift in Influenza A/H3N2 strains (1968-2007) in the light of antigen-antibody interactions

Author(s): Pratip Shil | Sameer Chavan | Sarah Cherian
Volume: 6
Issue: 7
Year: 2011
Immunoinformatics prediction of linear epitopes from Taenia solium TSOL18

Author(s): Mirko Zimic | Andres Hazaet Gutierrez | Robert Hugh Gilman | Cesar Lopez | Miguel Quiliano | Wilfredo Evangelista | Armando Gonzales | Hector Hugo Garcia | Patricia Sheen
Volume: 6
Issue: 7
Year: 2011
Physicochemical characterization and functional site analysis of lactoferrin gene of Vechur cow

Author(s): Anisha Shashidharan | Ruchi Singh | Salini Bhasker | Chinnamma Mohankumar
Volume: 6
Issue: 7
Year: 2011
Robust consensus clustering for identification of expressed genes linked to malignancy of human colorectal carcinoma

Author(s): Gatot Wahyudi | Ito Wasito | Tisha Melia | Indra Budi
Volume: 6
Issue: 7
Year: 2011
Analysis of sequence diversity among IS6110 sequence of Mycobacterium tuberculosis: possible implications for PCR based detection

Author(s): Sathish Sankar | Suresh Kuppanan | Babu Balakrishnan | Balaji Nandagopal
Volume: 6
Issue: 7
Year: 2011
Gene-chromosome locations of neuropsychiatric diseases

Author(s): Paul Shapshak | Charurut Somboonwit | John Sinnott | Deborah Commins | Elyse Singer | Andrew Levine
Volume: 7
Issue: 7
Year: 2011
Monozygotic twins: genes are not the destiny?

Author(s): Aniruddha Chatterjee* | Ian M Morison
Volume: 7
Issue: 7
Year: 2011
Molecular authentication of three Italian melon accessions by ARMS-PCR and ITS1 (internal transcribed spacer 1) secondary structure prediction

Author(s): Stefania Fantaccione | Pasqualina Woodrow | Giovanni Pontecorvo
Volume: 2
Issue: 7
Year: 2008
SDED: A novel filter method for cancer-related gene selection

Author(s): Wenlong Xu | Minghui Wang | Xianghua Zhang | Lirong Wang | Huanqing Feng
Volume: 2
Issue: 7
Year: 2008
Primary response of the sGC heme binding domain to the cleavage of the Fe-His bond

Author(s): Huali Zhang | Ming Lu | Yuebin Zhang | Zhengqiang Li
Volume: 2
Issue: 7
Year: 2008
Functional annotations in bacterial genomes based on small RNA signatures

Author(s): Jayavel Sridhar | Ziauddin Ahamed Rafi
Volume: 2
Issue: 7
Year: 2008
A tool for the prediction of functionally important sites in proteins using a library of functional templates

Author(s): Christopher J. Lanczycki | Saikat Chakrabarti
Volume: 2
Issue: 7
Year: 2008
CALCOM: A software for calculating the center of mass of proteins

Author(s): Susan Costantini | Antonella Paladino | Angelo M. Facchiano
Volume: 2
Issue: 7
Year: 2008
On the hydrophobicity of peptides: Comparing empirical predictions of peptide log P values

Author(s): Sarah J. Thompson | Channa K. Hattotuwagama | John D. Holliday | Darren R. Flower
Volume: 1
Issue: 7
Year: 2006
Use of sequence motifs as barcodes and secondary structures of Internal Transcribed spacer 2 (ITS2, rDNA) for identification of the Indian liver fluke, Fasciola (Trematoda: Fasciolidae)

Author(s): Pramod Kumar Prasad | Veena Tandon | Devendra Kumar Biswal | Lalit Mohan Goswami | Anupam Chatterjee
Volume: 3
Issue: 7
Year: 2009
Insights from Streptococcus pneumoniae glucose kinase structural model

Author(s): Chaitanya Mulakayala | Babajan Nawaz Banaganapalli | C. M. Anuradha | Suresh Kumar Chitta
Volume: 3
Issue: 7
Year: 2009
Docking study of triphenylphosphonium cations as estrogen receptor alpha modulators

Author(s): Joseph P. Salisbury | John C. Williams, Jr
Volume: 3
Issue: 7
Year: 2009
CHPVDB - a sequence annotation database for Chandipura Virus

Author(s): Manas Ranjan Dikhit | Sindhu Prava Rana | Pradeep Das | Ganesh Chandra Sahoo
Volume: 3
Issue: 7
Year: 2009
Silkworm nucleotide databases - Current trends and future prospects

Author(s): Nicole Koshy | Kangayam M. Ponnuvel | Randhir K. Sinha | S. M. H. Qadri
Volume: 2
Issue: 7
Year: 2008
Role of thymine in protein coding frames of mRNA sequences

Author(s): Perumal Anandagopu | Sivakumar Suhanya | Veerasamy Jayaraj | Ekambaram Rajasekaran
Volume: 2
Issue: 7
Year: 2008
Modeling of the Potential coiled-coil structure of Snapin protein and its interaction with SNARE complex

Author(s): Ragul Gowthaman | A Johnwin Silvester | Saranya K. | Rathna Kanya K.S. | Archana N. R.
Volume: 1
Issue: 7
Year: 2006
Multi-class subcellular location prediction for bacterial proteins

Author(s): Paul D. Taylor | Teresa K. Attwood | Darren R. Flower
Volume: 1
Issue: 7
Year: 2006
Empirical prediction of peptide octanol-water partition coefficients

Author(s): Channa K. Hattotuwagama | Darren R. Flower
Volume: 1
Issue: 7
Year: 2006
SPCalc: A web-based calculator for sample size and power calculations in micro-array studies

Author(s): Weiliang Qiu | Mei-Ling Ting Lee
Volume: 1
Issue: 7
Year: 2006
On relationship of Z-curve and Fourier approaches for DNA coding sequence classification

Author(s): Ngai-Fong Law | Kin-On Cheng | Wan-Chi Siu
Volume: 1
Issue: 7
Year: 2006
Evaluation of optimization techniques for variable selection in logistic regression applied to diagnosis of myocardial infarction

Author(s): Adam Kiezun | I-Ting Angelina Lee | Noam Shomron
Volume: 3
Issue: 7
Year: 2009
Extract-SAGE: An integrated platform for cross-analysis and GA-based selection of SAGE data

Author(s): Cheng-Hong Yang | Tsung-Mu Shih | Yu-Chen Hung | Hsueh-Wei Chang | Li-Yeh Chuang
Volume: 3
Issue: 7
Year: 2009
Finding Alu in primate genomes with AF-1

Author(s): Ravi Shankar | Bhavesh Kataria | Mitali Mukerji
Volume: 3
Issue: 7
Year: 2009
RICHEST - a web server for richness estimation in biological data

Author(s): Chris Durden | Qunfeng Dong
Volume: 3
Issue: 7
Year: 2009
BrainSnail: A dynamic information display system for the Sciences

Author(s): Martin Telefont | Asai Asaithambi
Volume: 3
Issue: 7
Year: 2009
Database of cell signaling enzymes

Author(s): Ragul Gowthaman | Ramya Venugopal | Dhiviya Dayanandam
Volume: 1
Issue: 7
Year: 2006
Matrix protein 1: A comparative in silico study on different strains of influenza A H5N1 Virus

Author(s): Tamanna Anwar | Sunil K Lal | Asad U Khan
Volume: 1
Issue: 7
Year: 2006
DrugMetZ DB: an anthology of human drug metabolizing Chytochrome P450 enzymes

Author(s): Tresha Remya | Shanthi Nagarajan
Volume: 1
Issue: 7
Year: 2006
An assessment of the current state of Bioinformatics education

Author(s): Martin Gollery
Volume: 1
Issue: 7
Year: 2006
High-throughput virtual screening and docking studies of matrix protein vp40 of ebola virus

Author(s): Thangaraju Tamilvanan | Waheeta Hopper
Volume: 9
Issue: 6
Year: 2013
Molecular characterization of α-amylase from Staphylococcus aureus

Author(s): Hanumanthu Prasanna Lakshmi | Potukuchi Venkata Gurunadha Krishna Sarma | Uppu Venkateswara Prasad | Sthanikam Yeswanth | Osuru Hari Prasad | Mangamoori Lakshmi Narasu | Potukuchi Venkata Gurunadha Krishna Sarma
Volume: 9
Issue: 6
Year: 2013
Functional assignment to maize group 1 LEA protein EMB564 within the cell nucleus using computational analysis

Author(s): Xiaolin Wu | Fangping Gong | Wei Wang
Volume: 9
Issue: 6
Year: 2013
Molecule of the month: miRNA and proteins DARPP-32, DRD1, SLC6A3, and CK2

Author(s): Paul Shapshak
Volume: 9
Issue: 6
Year: 2013
PyPLIF: Python-based Protein-Ligand Interaction Fingerprinting

Author(s): Muhammad Radifar | Nunung Yuniarti | Enade Perdana Istyastono
Volume: 9
Issue: 6
Year: 2013
Virtual screening of compounds from the patchouli oil of Pogostemon herba for COX-1 inhibition

Author(s): Sentot Joko Raharjo | Fatchiyah
Volume: 9
Issue: 6
Year: 2013
Molecular docking study of P4-Benzoxaborole-substituted ligands as inhibitors of HCV NS3/4A protease

Author(s): Abdul Wadood | Muhammad Riaz | Syed Babar Jamal | Masaud Shah | Muhammad Arif Lodhi
Volume: 9
Issue: 6
Year: 2013
Comparative analysis to identify determinants of changing life style in Thermosynechococcus elongatus BP-1, a thermophilic cyanobacterium

Author(s): Ratna Prabha | Dhananjaya P Singh | Shailendra K Gupta | Sávio Torres de Farias | Anil Rai
Volume: 9
Issue: 6
Year: 2013
Exploring the role of BCHE in the onset of Diabetes, Obesity and Neurological Disorders

Author(s): Allam Appa Rao | Gundlapally Jyothsna | Pulipati Shalini | Amit Kumar | Anupam Bhattacharya | Amita Kashyap
Volume: 8
Issue: 6
Year: 2012
Immunoinformatic evaluation of multiple epitope ensembles as vaccine candidates: E coli 536

Author(s): Jade Rai | Ka In Lok | Chun Yin Mok | Harvinder Mann | Mohammed Noor | Pritesh Patel | Darren R Flower
Volume: 8
Issue: 6
Year: 2012
Ty1-copia group retrotransposons and the evolution of retroelements in several angiosperm plants: evidence of horizontal transmission

Author(s): Pasqualina Woodrow | Loredana F Ciarmiello | Stefania Fantaccione | Maria Grazia Annunziata | Giovanni Pontecorvo | Petronia Carillo
Volume: 8
Issue: 6
Year: 2012
Mining for SSRs and FDMs from expressed sequence tags of Camellia sinensis

Author(s): Jagajjit Sahu | Ranjan Sarmah | Budheswar Dehury, | Kishore Sarma | Smita Sahoo | Mousumi Sahu | Madhumita Barooah | Mahendra Kumar Modi | Priyabrata Sen
Volume: 8
Issue: 6
Year: 2012
Microsatellite analysis in organelle genomes of Chlorophyta

Author(s): Himani Kuntal | Vinay Sharma | Henry Daniell
Volume: 8
Issue: 6
Year: 2012
Binding energy calculation of GSK-3 protein of human against some anti-diabetic compounds of Momordica charantia linn (Bitter melon)

Author(s): Ridip Hazarika | Pratap Parida | B Neog | RNS Yadav
Volume: 8
Issue: 6
Year: 2012
Ssa miRNAs DB: online repository of in silico predicted miRNAs in salmo salar

Author(s): D Reyes | V Cepeda | R González | Rodrigo Vidal
Volume: 8
Issue: 6
Year: 2012
BacterialLectinDb: An integrated bacterial lectin database

Author(s): Dharmendra Kumar | Yashoda Mittal
Volume: 8
Issue: 6
Year: 2012
Model requirements for Biobank Software Systems

Author(s): Edit Tukacs | Agnes Korotij | Zsuzsanna Maros-Szabo | Agnes Marta Molnar | Andras Hajdu | Zsolt Torok
Volume: 8
Issue: 6
Year: 2012
MAPT and PAICE: Tools for time series and single time point transcriptionist visualization and knowledge discovery

Author(s): Parsa Hosseini | Arianne Tremblay | Benjamin F Matthews | Nadim W Alkharouf
Volume: 8
Issue: 6
Year: 2012
Model based design of inhibitors for c-jun

Author(s): Pallavi Chauhan 1 | Madhvi Shakya
Volume: 4
Issue: 6
Year: 2009
An integrated database to enhance the identification of SNP markers for rice

Author(s): ChangKug Kim | UngHan Yoon | GangSeob Lee | SungHan Park | Young-Joo Seol | JangHo Hahn | HwanKi Lee
Volume: 4
Issue: 6
Year: 2009
A database for anti-diabetic plants with clinical/ experimental trials

Author(s): Sarita Singh | Sunil Kumar Gupta | Gulam Sabir | Prahlad Kishore Seth | Manish Kumar Gupta
Volume: 4
Issue: 6
Year: 2009
Relationship between human oral lichen planus and oral squamous cell carcinoma at a genomic level: a datamining study

Author(s): Luca Giacomelli | Ugo Covani | Giacomo Chiappe | Antonio Barone | Oluwadayo Oluwadara | Francesco Chiappelli
Volume: 4
Issue: 6
Year: 2009
LCK, survivin and PI-3K in the molecular biomarker profiling of oral lichen planus and oral squamous cell carcinoma

Author(s): Oluwadayo Oluwadara | George Kossan | Raisa Avezova | Francesco Chiappelli | Luca Giacomelli | Russell Christensen
Volume: 4
Issue: 6
Year: 2009
Dataset of potential targets for Mycobacterium tuberculosis H37Rv through comparative genome analysis

Author(s): Siddiqui M. Asif | Amir Asad | Malik S. Anjali | Arya Arvind | Kapoor Neelesh | Kumar Hirdesh | Kumar Sanjay | Ahmad Faizan
Volume: 4
Issue: 6
Year: 2009
A modeled structure for amidase-03 from Bacillus anthracis

Author(s): Ravi Datta Sharma | Pradeep Kumar Sharma | Nabajyoti Goswami | Andrew M. Lynn | Rajnee | Safdar Jawaid
Volume: 4
Issue: 6
Year: 2009
Amino acid sequence divergence of Tat protein (exon1) of subtype B and C HIV-1 strains: Does it have implications for vaccine development?

Author(s): Abraham Joseph Kandathil 1, | Rajesh Kannangai | Gopalan Sridharan | Oriapadickal Cherian Abraham | Susanne Alexander Pulimood
Volume: 4
Issue: 6
Year: 2009
Comparative study of antioxidants as cancer preventives through inhibition of HIF-1 alpha activity

Author(s): Jyoti Upadhyay | Rajesh K. Kesharwani | Krishna Misra
Volume: 4
Issue: 6
Year: 2009
Prediction of functional engrailed homology-1 protein motif from sequence

Author(s): Danielle S. Dalafave
Volume: 4
Issue: 6
Year: 2009
Mi-DISCOVERER: A Bioinformatics Tool Detection of mi-RNA in Human Genome

Author(s): Saadia Arshad | Asia Mumtaz | Freed Ahmad | Sadia Liaquat | Shahid Nadeem | Shahid Mehboob | Muhammad Afzal
Volume: 5
Issue: 6
Year: 2010
Structure Modeling and comparative genomics for Epimerase enzyme (Gal10p)

Author(s): Ashwani Sharma | Pushkar Malakar
Volume: 5
Issue: 6
Year: 2010
TNAURice: Database on rice varieties released from Tamil Nadu Agricultural University

Author(s): Jegadeesan Ramalingam | Dhandapani Vignesh | Loganathan Arul | Natarajan Sathishkumar | Ramasamy Samiyappan | Katiannan Thiyagarajan
Volume: 5
Issue: 6
Year: 2010
Structure Prediction of Dihydroflavonol 4- Reductase and Anthocyanidin Synthase from Spinach

Author(s): Archna Sahay | Madhvi Shakya
Volume: 5
Issue: 6
Year: 2010
HPLC Retention time prediction for metabolome analysis

Author(s): Takashi Hagiwara | Seiji Saito | Yoshifumi Ujiie | Kensaku Imai | Masanori Kakuta | Koji Kadota | Tohru Terada | Kazuya Sumikoshi | Kentaro Shimizu | Tatsunari Nishi
Volume: 5
Issue: 6
Year: 2010
Designing cyclic peptide inhibitor of dengue virus NS3-NS2B protease by using molecular docking approach

Author(s): Usman Sumo Friend Tambunan | Samira Alamudi
Volume: 5
Issue: 6
Year: 2010
In silico mining of SSR markers from Expressed Sequence Tags of bamboo species

Author(s): Oviya Iyappan Ramalakshmi | Shanmughavel Piramanayagam
Volume: 5
Issue: 6
Year: 2010
Protein sequence redundancy reduction: comparison of various methods

Author(s): Kresimir Sikic | Oliviero Carugo
Volume: 5
Issue: 6
Year: 2010
Interactions between an inflammatory response to infection and protein trafficking pathways favor correction of defective protein trafficking in Cystic Fibrosis

Author(s): Jerry Mobley Wright | Elisabeth Joseloff | Yuri Nikolsky | Tatiana Serebriyskaya | Diana Wetmore
Volume: 5
Issue: 6
Year: 2010
Modeling and phylogeny analysis of bread wheat MnSOD

Author(s): Sonia Sheoran | Rajender Singh | Bharati Pandey | Pradeep Sharma | Ravish Chatrath
Volume: 6
Issue: 6
Year: 2011
Flavonoids lower Alzheimer's Aß production via an NFkB dependent mechanism

Author(s): Daniel Paris | Venkat Mathura | Ghania Ait-Ghezala | David Beaulieu-Abdelahad | Nikunj Patel | Corbin Bachmeier | Michael Mullan
Volume: 6
Issue: 6
Year: 2011
An ANN model for treatment prediction in HBV patients

Author(s): Sajid Iqbal | Khalid Masood | Osman Jafer
Volume: 6
Issue: 6
Year: 2011
An ANN-GA model based promoter prediction in Arabidopsis thaliana using tilling microarray data

Author(s): Hrishikesh Mishra | Nitya Singh | Krishna Misra | Tapobrata Lahiri
Volume: 6
Issue: 6
Year: 2011
The open-access dataset for insilico cardiotoxicity prediction system

Author(s): Sebastian Polak | Barbara Wisniowska | Kamil Fijorek | Anna Glinka | Milosz Polak | Aleksander Mendyk
Volume: 6
Issue: 6
Year: 2011
The integrated web service and genome database for agricultural plants with biotechnology information

Author(s): ChangKug Kim | DongSuk Park | YoungJoo Seol | JangHo Hahn
Volume: 6
Issue: 6
Year: 2011
miRTour: Plant miRNA and target prediction tool

Author(s): Ivan Milev | Vesselin Baev | Ivan Minkov | Galina Yahubyan
Volume: 6
Issue: 6
Year: 2011
Genome-wide integrative analysis revealed a correlation between lengths of copy number segments and corresponding gene expression profile

Author(s): Ken Miyaguchi | Yutaka Fukuoka | Mahmut Yasen | Shota Nemoto | Toshiaki Ishikawa | Hiroyuki Uetake | Shinji Tanaka | Kenichi Sugihara | Shigeki Arii | Hiroshi Tanaka | Hiroshi Mizushima
Volume: 7
Issue: 6
Year: 2011
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