A Python Based Hydrophilicity Plot to Assess the Exposed and Buried Regions of a Protein

Author(s): P. Pandarinath
Volume: 4
Issue: 7
Year: 2011

The Influence of Errors Inherent in Genome Wide Association Studies (GWAS) in Relation To Single Gene Models

Author(s): Philip Cooley
Volume: 4
Issue: 7
Year: 2011

Phosphorylation and Acetylation of Acyl-Coa Synthetase- I

Author(s): Rosalind A. Coleman
Volume: 4
Issue: 7
Year: 2011

An Efficient Method for Extraction of Secreted Proteins of a Filamentous Fungus, Cryphonectria parasitica

Author(s): Baoshan Chen
Volume: 4
Issue: 6
Year: 2011

“All and None” Refining Strategy; Fishing Your Correct Protein from Proteomics Ocean

Author(s): Sameh Magdeldin
Volume: 4
Issue: 6
Year: 2011

Outlier-Based Differential Expression Analysis in Proteomics Studies

Author(s): David M. Lubman
Volume: 4
Issue: 6
Year: 2011

Theoretical Study of Benzylic Oxidation and Effect of Para- Substituents by Using Hyperchem Program

Author(s): Mohd N. Mordi
Volume: 4
Issue: 5
Year: 2011

Mitochondrial Haplogroups Associated with Japanese Centenarians, Alzheimer’s Patients, Parkinson’s Patients, Type 2 Diabetes Patients, Healthy Non-Obese Young Males, and Obese Young Males

Author(s): Shigeru Takasak
Volume: 4
Issue: 5
Year: 2011

Gene Expression Profiling of Tuberculous Meningitis

Author(s): Akhilesh Pandey
Volume: 4
Issue: 5
Year: 2011

In-silico Approaches for Studying Cross-talk of Different Kinases Associated in Diverse Biological Processes with their Interacting Substrates Partners

Author(s): Dr. Gohar Taj
Volume: 4
Issue: 4
Year: 2011

Reconstruction of Local Biochemical Reaction Network Based on Human Chromosome 9 Sequence Data

Author(s): Dr. Biqing Chen
Volume: 4
Issue: 4
Year: 2011

LeaderGene: A Fast Data-mining Tool for Molecular Genomics

Author(s): Prof Claudio Nicolini
Volume: 4
Issue: 4
Year: 2011

Gene Expression Profiling of Gastric Cancer

Author(s): Dr. Akhilesh Pandey
Volume: 4
Issue: 4
Year: 2011

Comparative In silico Analysis of Partial Coat Protein Gene Sequence of Zucchini Yellow Mosaic Virus Infecting Summer Squash (Cucurbita pepo L.) Isolated From India

Author(s): Sharma Neha
Volume: 4
Issue: 3
Year: 2011

A Genome Based Discovery of S. mansoni Secretome to Identify Therapeutic Targets

Author(s): Mandage R H
Volume: 4
Issue: 3
Year: 2011

Proteomic Analyses of Proteins Differentially Expressed in Recurrent and Primary Pterygia

Author(s): Takashi Kanamoto
Volume: 4
Issue: 3
Year: 2011

In silico Homology Modeling of Prophenoloxidase activating factor Serine Proteinase Gene from the Haemocytes of Fenneropenaeus indicus

Author(s): B.Vaseeharan
Volume: 4
Issue: 2
Year: 2011

Enhanced Meta-analysis Highlights Genes Involved in Metastasis from Several Microarray Datasets

Author(s): Eric Depiereux
Volume: 4
Issue: 2
Year: 2011

Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome

Author(s): Akhilesh Pandey
Volume: 4
Issue: 2
Year: 2011

Prelocabc: A Novel Predictor of Protein Sub-cellular Localization Using a Bayesian Classifier

Author(s): Yunping ZHU | Fuchu HE
Volume: 4
Issue: 2
Year: 2011

Genetic Inheritance and Genome Wide Association Statistical Test Performance

Author(s): Philip Cooley | Robert Clark | Ralph Folsom | Grier Page
Volume: 03
Issue: 12
Year: 2010

Bi-Linear Regression for 18O Quantification: Modeling across the Elution Profile

Author(s): Jeanette E. Eckel-Passow | Douglas W. Mahoney | Ann L. Oberg | Roman M. Zenka | Kenneth L. Johnson | K. Sreekumaran Nair | Yogish C. Kudva | H. Robert Bergen III | Terry M. Therneau
Volume: 03
Issue: 12
Year: 2010

Computational Identification of Alzheimer's Disease Specific Transcription Factors using Microarray Gene Expression Data

Author(s): Vishalini Krishnamurthy | Nicy Sweety Issac | Jeyakumar Natarajan
Volume: 02
Issue: 12
Year: 2009

Proteome Expression Database of Ewing Sarcoma: a Segment of the Genome Medicine Database of Japan Proteomics

Author(s): Kazutaka Kikuta | Yukako Tsunehiro | Akihiko Yoshida | Naobumi Tochigi | Setsuo Hirohahsi, et al.
Volume: 02
Issue: 12
Year: 2009

An Effective Method for the Analysis of Human Plasma Proteome using Two-dimensional Gel Electrophoresis

Author(s): Yasmin Ahmad | Narendra Sharma
Volume: 02
Issue: 12
Year: 2009

Protein Sample Treatment with Peptide Ligand Library: Coverage and Consistency

Author(s): Lei Li | ChengJun Sun | Steve Freeby | Dennis Yee | Sylvie Kieffer-Jaquinod, et al.
Volume: 02
Issue: 12
Year: 2009

Editors & Editorial Board

Author(s): Richard D.
Volume: 03
Issue: 12
Year: 2010

Editors & Editorial Board

Author(s): Richard
Volume: 02
Issue: 12
Year: 2009

Peptidomimetics Based Inhibitor Design for HIV – 1 gp120 Attachment Protein

Author(s): Umashankar Vetrivel | Priya Sankar | Naveen kumar Nagarajan | Gurunathan Subramanian
Volume: 02
Issue: 11
Year: 2009

Geraniol and Limonene Interaction with 3-hydroxy-3- methylglutaryl-CoA (HMG-CoA) Reductase for their Role as Cancer Chemo-preventive Agents

Author(s): Madhumita Pattanayak | P K Seth | Suchi Smita | Shailendra K Gupta
Volume: 02
Issue: 11
Year: 2009

Proteome Expression Database of Lung Adenocarcinoma: a segment of the Genome Medicine Database of Japan Proteomics

Author(s): Seiji Kosaihira | Yukako Tsunehiro | Koji Tsuta | Naobumi Tochigi | Akihiko Gemma, et al.
Volume: 02
Issue: 11
Year: 2009

An Insight into Structural and Functional Characteristics of Plasmodium falciparum Farnesyltransferase (PfFT) 3d7: Comparative Modeling and Docking Studies

Author(s): Pradeep Kumar M | Kranthi Raj.K | D. Ramachandran | Pavan Kumar MNS | Radha Vaddavalli | P. Jhansi lakshmi
Volume: 03
Issue: 11
Year: 2010

Mass Blaster V1.0 – A Perl Gui Tool for Mass Sequence Blast and Gene Prediction

Author(s): Saravanan Vijayakumar
Volume: 03
Issue: 11
Year: 2010

Epitope Design from Transporter Targets in N. gonorrhoeae

Author(s): Debmalya Barh | Amarendra Narayana Misra
Volume: 02
Issue: 11
Year: 2009

Structure Based Drug Designing for Diabetes Mellitus

Author(s): K. Ramanathan | H. Karthick | N. Arun
Volume: 03
Issue: 11
Year: 2010

Editors & Editorial Board

Author(s): Richard D. Smith
Volume: 03
Issue: 11
Year: 2010

Molecular Cloning and Comparative In silico Analysis of Calmodulin Genes from Cereals and Millets for Understanding the Mechanism of Differential Calcium Accumulation

Author(s): Manoj Nath | Anshita Goel | Gohar Taj | Anil Kumar
Volume: 03
Issue: 10
Year: 2010

Tissue-Specifi c Protein Expression in Human Cells, Tissues and Organs

Author(s): Marcus Gry | Per Oksvold | Fredrik Pontén | Mathias Uhlén
Volume: 03
Issue: 10
Year: 2010

CART Assignment of Folding Mechanisms to Homodimers with Known Structures

Author(s): Abishek Suresh | Pattabhiraman Lalitha | Pandjassarame Kangueane
Volume: 03
Issue: 10
Year: 2010

Proteomic Analysis of the Response of Human Endothelial Cell Line EA.hy926 to 1800 GSM Mobile Phone Radiation

Author(s): Reetta Nylund | Hanna Tammio | Niels Kuster | Dariusz Leszczynski
Volume: 02
Issue: 10
Year: 2009

LC–MS Based Detection of Differential Protein Expression

Author(s): Leepika Tuli | Habtom W. Ressom
Volume: 02
Issue: 10
Year: 2009

Proteomic Analysis of Vascular Endothelial Cells-Effects of Laminar Shear Stress and High Glucose

Author(s): Xiao-Li Wang | Alex Fu | Craig Spiro | Hon-Chi Lee
Volume: 02
Issue: 10
Year: 2009

Proteomic Analysis of Human Neuronal Cells Treated with the Gulf War Agent Pyridostigmine Bromide

Author(s): Laila Abdullah | Jon Reed | Gogce Kayihan | Venkatarajan Mathura | Benoit Mouzon, et al.
Volume: 02
Issue: 10
Year: 2009

Editors & Editorial Board

Author(s): Richard D. Smith
Volume: 03
Issue: 10
Year: 2010

Application of Multivariate Data Analysis for the Classification of Two Dimensional Gel Images in Neuroproteomics

Author(s): Saveria Mazzara
Volume: 4
Issue: 1
Year: 2011

Prediction of Discontinuous B-Cell Epitopes Using Logistic Regression and Structural Information

Author(s): Jianjun Hu
Volume: 4
Issue: 1
Year: 2011

A Novel Mass Spectrometric Epitope Mapping Approach without Immobilization of the Antibody

Author(s): Michael O. Glocker
Volume: 4
Issue: 1
Year: 2011

Immunoinformatics: Screening of Potential T Cell Antigenic Determinants in Proteome of H1N1 Swine Influenza Virus for Virus Epitope Vaccine Design

Author(s): Pawan Sharma | Ajay Kumar
Volume: 03
Issue: 09
Year: 2010

Functional Insights from Computational Modeling of Orphan Proteins Expressed in a Microbial Community

Author(s): Korin E. Wheeler | Adam Zemla | Yongqin Jiao | Daniela S. Aliaga Goltsman | Steven W.Singer | Jillian F. Banfi eld | Michael P. Thelen
Volume: 03
Issue: 09
Year: 2010

Evaluation for Computational Platforms of LC-MS Based Label-Free Quantitative Proteomics: A Global View

Author(s): Runxuan Zhang | Alun Barton | Julie Brittenden | Jeffrey T. -J. Huang | Daniel Crowther
Volume: 03
Issue: 09
Year: 2010

Discovery of Infectious Disease Biomarkers in Murine Anthrax Model Using Mass Spectrometry of the Low-Molecular-Mass Serum Proteome

Author(s): Aarthi Narayanan | Weidong Zhou | Mark Ross | Jane Tang | Lance Liotta, et al.
Volume: 02
Issue: 09
Year: 2009

Proteomic Analysis Of The “Side Population” (SP) Cells From Murine Bone Marrow

Author(s): Ravipati Satyavani | Azra Fatima | Curam S. Sundaram | Charumathi Anabalagan | CV Saritha, et al.
Volume: 02
Issue: 09
Year: 2009

Proteome of Salmonella Enterica Serotype Typhimurium Grown in a Low Mg2+/pH Medium

Author(s): Liang Shi | Charles Ansong | Heather Smallwood | Leah Rommereim | Jason E. McDermott, et al.
Volume: 02
Issue: 09
Year: 2009

Proteomic Alterations During Dormant Period of Curcuma Longa Rhizomes

Author(s): Daranee Chokchaichamnankit | Pantipa Subhasitanont | N. Monique Paricharttanakul | Polkit Sangvanich | Jisnuson Svasti, et al.
Volume: 02
Issue: 09
Year: 2009

Genetic Mutations Affecting the Success and Failure of HIV Regimens

Author(s): George Towfic | Judy Munshower | Samira Kettoola | Fadi Towfic | Frank Graziano, et al.
Volume: 02
Issue: 09
Year: 2009

Managing Proteomics Data: From Generation and Data Warehousing to Central Data Repository

Author(s): Herbert Thiele | Jorg Glandorf | Peter Hufnagel | Gerhard Korting | Martin Bluggel
Volume: 01
Issue: 09
Year: 2008

Cancer Proteomics for Biomarker Development

Author(s): Tadashi Kondo
Volume: 01
Issue: 09
Year: 2008

Novel Therapeutic Approaches to Treat Alzheimer’s Disease and Memory Disorders

Author(s): David B. Ascher | Gabriela A. N. Crespi | Hooi Ling Ng | Craig J. Morton | Michael W. Parker, et al.
Volume: 01
Issue: 09
Year: 2008

Profiling of Phosphorylated Proteins in Human Fetal Liver

Author(s): Ying Jiang | Quanjun Wang | Jinglan Wang | Songfeng Wu | Gang Cheng, et al.
Volume: 01
Issue: 09
Year: 2008

Imaging Mass Spectrometry and Its Methodological Application to Murine Tissue

Author(s): J.O.R. Gustafsson | S. R. McColl | P. Hoffmann
Volume: 01
Issue: 09
Year: 2008

Editors & Editorial Board

Author(s): Richard D. Smith
Volume: 03
Issue: 09
Year: 2010

In silico Discovery of Novel Protein Domains in Streptococcus mutans

Author(s): Anand Ramesh Varsale | Amol Shriram Wadnerkar | Rajendra Haribhau Mandage | Priyanka Khasherao Jadhavrao
Volume: 03
Issue: 08
Year: 2010

GeneNarrator: Mining the Literaturome for Relations Among Genes

Author(s): Jing Ding | Daniel Berleant | Jun Xu | Kenton Juhlin | Eve Wurtele, et al
Volume: 02
Issue: 08
Year: 2009

In Silico Identification of Putative Proton Binding Sites of a Plasma Membrane H+-ATPase Isoform of Arabidopsis Thaliana, AHA1

Author(s): Sunil Kumar | Binod Bihari Sahu | Niraj Kanti Tripathy | Birendra Prasad Shaw
Volume: 02
Issue: 08
Year: 2009

MUTATER: Tool for the Introduction of Custom Position Based Mutations in Protein and Nucleotide Sequences

Author(s): Azeem Mehmood Butt | Asifa Ahmed
Volume: 02
Issue: 08
Year: 2009

Performance and Evaluation of MicroRNA Gene Identification Tools

Author(s): Swati Sinha | T.S. Vasulu | Rajat K. De
Volume: 02
Issue: 08
Year: 2009

Data Deposition as an Integral Part of the Publication Process

Author(s): Sandra Orchard
Volume: 02
Issue: 08
Year: 2009

SELDI Based Proteomic Determination of Hepatic Biomarkers in Mouse Serum Following Acetaminophen Administration

Author(s): Huixiao Hong | Candee Teitel | Laura P. James | Weida Tong | Jack A. Hinson, et al.
Volume: 01
Issue: 08
Year: 2008

Correlation between the Sucrose Synthase Protein Subfamilies, Variations in Structure and Expression in Stress-derived Expressed Sequence Tag Datasets

Author(s): Jayashree B | R.Pradeep | Anil Kumar | B.Gopal
Volume: 01
Issue: 08
Year: 2008

Apolipoprotein(a) Size and Lipoprotein(a) Concentrations in Patients with Good and Poor Coronary Collateral Flow – an Interrelation Discovered by Proteomic Screening of Pooled Plasma Samples

Author(s): Daniel Stalder | Trinh Cung | Steffen Gloekler | Pascal Meier | Evelyn Schlappritzi, et al.
Volume: 01
Issue: 08
Year: 2008

Targeted SCX Based Peptide Fractionation for Optimal Sequencing by Collision Induced, and Electron Transfer Dissociation

Author(s): Henk W.P. van den Toorn | Shabaz Mohammed | Joost W. Gouw | Bas van Breukelen | Albert J.R. Heck
Volume: 01
Issue: 08
Year: 2008

Comparative Modeling and Analysis of 3-D Structure of EMV2, a Late Embryogenesis Abundant Protein of Vigna Radiata (Wilczek)

Author(s): Subramanian Rajesh | Muthurajan Raveendran | Ayyanar Manickam
Volume: 01
Issue: 08
Year: 2008

Cheminformatics

Author(s): Nutan Prakash | Dinta A. Gareja
Volume: 03
Issue: 08
Year: 2010

Molecular Cloning and In silico Analysis of Functional Homologues of Hypersensitive Response Gene(s) Induced During Pathogenesis of Alternaria Blight in Two Genotypes of Brassica

Author(s): Arpita Mishra | Dinesh Pandey | Anshita Goel | Anil Kumar
Volume: 03
Issue: 08
Year: 2010

Insights of New Tools In Glycomics Research

Author(s): Denong Wang | Srinubabu Gedela
Volume: 01
Issue: 08
Year: 2008

DNA Computation: Applications and Perspectives

Author(s): Somnath Tagore | Saurav Bhattacharya | Md Ataul Islam | Sucharita Dey | Md Lutful Islam | Sanchari Pradhan
Volume: 03
Issue: 07
Year: 2010

Molecular Characterization and Phylogenetic Analysis of BZIP Protein in Plants

Author(s): Dhivya S | Arul L | Balasubramanian P | Sathishkumar
Volume: 03
Issue: 07
Year: 2010

Classification of Protein Structural Classes using Isoluecine and Lysine Amino Acids

Author(s): K. Manikandakumar | K. Gokul Raj | R. Srikumar | S. Muthukumaran
Volume: 03
Issue: 07
Year: 2010

A Chloroform-Assisted Protein Isolation Method Followed by Capillary NanoLC-MS Identify Estrogen-Regulated Proteins from MCF7 Cells

Author(s): Adaikkalam Vellaichamy | Chin-Yo Lin | Thin Thin Aye | Govindarajan R. Kunde | Alexey I. Nesvizhskii
Volume: 03
Issue: 07
Year: 2010

Defining an Embedded Code for Protein Ubiquitination

Author(s): Trafina Jadhav | Marie W. Wooten
Volume: 02
Issue: 07
Year: 2009

Molecular Characterization of Novel form of Type III Polyketide Synthase from Zingiber Officinale Rosc. and its Analysis using Bioinformatics Method

Author(s): Radhakrishnan.E.K | K.C. Sivakumar | E.V. Soniya
Volume: 02
Issue: 07
Year: 2009

An in Silico Molecular Evolutionary Analysis of Selected Species of Phoma : A Comparative Approach

Author(s): Devanand M. Dangre | Dnyaneshwar P. Rathod | Aniket K. Gade | Mahendra K. Rai
Volume: 02
Issue: 07
Year: 2009

Pharmaco-Informatics: Homology Modelling of the Target Protein (GP1, 2) for Ebola Hemorrhagic Fever and Predicting an Ayurvedic Remediation of the Disease

Author(s): Preenon Bagchi | Mahesh. M | Somashekhar.R
Volume: 02
Issue: 07
Year: 2009

Applying Magnetic Bead Separation / MALDI-TOF Mass Spectrometry to Human Tear Fluid Proteome Analysis

Author(s): Eiichi Sekiyama | Yumiko Matsuyama | Daisuke Higo | Takashi Nirasawa | Masaya Ikegawa et al.
Volume: 01
Issue: 07
Year: 2008

Application of Computational Tools for Identification of miRNA and Their Target SNPs

Author(s): George Priya Doss. C | Dike IP | Rao Sethumadhavan
Volume: 01
Issue: 07
Year: 2008

Development of core-shell magnetic mesoporous SiO2 microspheres for the immobilization of trypsin for fast protein digestion

Author(s): Dawei Qi | Yonghui Deng | Yingchao Liu | Huaqing Lin | Chunhui Deng et al.
Volume: 01
Issue: 07
Year: 2008

Polypeptide Rearrangement Hypothesis and It's Implication in Genetic Diversity

Author(s): Hicham Bouabe
Volume: 01
Issue: 07
Year: 2008

IDentification and Analysis of the Arabidopsis Thaliana Atfas4 Gene Whose Overexpression Results in the Development of A Fasciated Stem

Author(s): Gennady Pogorelko | Oksana Fursova | Eugene Klimov
Volume: 01
Issue: 07
Year: 2008

Global Proteomics: Pharmacodynamic Decision Making via Geometric Interpretations of Proteomic Analyses

Author(s): Paul Kearney | Nathan L. Currier | Daniel Chelsky | Clarissa Desjardins | Hyman M. Schipper et al.
Volume: 01
Issue: 07
Year: 2008

Editorial

Author(s): Richard D. Smith
Volume: 02
Issue: 07
Year: 2009

Identification of a Point Mutation Causing Splitting of Antigenic Domain in M1 Protein of H5n1 Strain from 2006 Outbreak in India

Author(s): Tamanna Anwar | Asad U Khan
Volume: 01
Issue: 06
Year: 2008

Optimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures

Author(s): Tamanna Sultana | Rick Jordan | James Lyons-Weiler
Volume: 02
Issue: 06
Year: 2009

Proteomic Analysis of Mussels Exposed to Fresh and Weathered Prestige’s Oil

Author(s): Itxaso Apraiz | Giulia Leoni | David Lindenstrand | Jan-Olov Persson | Susana Cristobal
Volume: 02
Issue: 06
Year: 2009

Epac-induced Alterations in the Proteome of Human SH-SY5Y Neuroblastoma Cells

Author(s): Even Birkeland | Gyrid Nygaard | Eystein Oveland | Olav Mjaavatten | Marie Ljones, et al
Volume: 02
Issue: 06
Year: 2009

Inference on Coat Protein Evolution of Lily Symptomless Carlavirus in India and Abroad Based on Motifs Study and Phylogenetic Analysis

Author(s): Suhasini Huddone | SV Bhardwaj | Rameshwar Singh Rattan | Kamlesh Kanwar | Anil Handa
Volume: 03
Issue: 06
Year: 2010

Molecular Docking Studies of Curcumin Derivatives with Multiple Protein Targets for Procarcinogen Activating Enzyme Inhibition

Author(s): C.R. Girija | Prashantha Karunakar | Chetan S Poojari | Noor Shahina Begum | Akheel Ahmed Syed
Volume: 03
Issue: 06
Year: 2010

SERPINE 1 Links Obesity and Diabetes: A Pilot Study

Author(s): Punit Kaur | Michael D. Reis | Glen R. Couchman | Samuel N. Forjuoh | John F. Greene Jr | Alexzander Asea
Volume: 03
Issue: 06
Year: 2010

Statistical Analyses of Next Generation Sequence Data: A Partial Overview

Author(s): Susmita Datta | Somnath Datta | Seongho Kim | Sutirtha Chakraborty | Ryan S. Gill
Volume: 03
Issue: 06
Year: 2010

Range Charts for Agreement in Measurement Comparison Studies, With Application to Replicate Mass Spectrometry Experiments

Author(s): James A. Koziol | Anne C. Feng | Jingyi Yu | Noelle M. Griffin | Jan E. Schnitzer
Volume: 01
Issue: 06
Year: 2008

Prediction of 3-Dimensional Structure of Cathepsin L Protein of Rattus Norvegicus

Author(s): Sunil Kumar | Priya Ranjan Debata | Prakash C. Supakar
Volume: 01
Issue: 06
Year: 2008

Development of Deuterated-Leucine Labeling with Immunoprecipitation to Analyze Cellular Protein Complex

Author(s): Shufang Liang | Shufang Liang | Xuejiao Xu | Haojie Lu | Pengyuan Yang
Volume: 01
Issue: 06
Year: 2008

Analysis of Binding Properties of Phosphoinositide 3-kinase Through In silico Molecular Docking

Author(s): P. Daisy | R. Sasikala | A. Ambika
Volume: 02
Issue: 06
Year: 2009

Editors & Editorial Board

Author(s): Richard
Volume: 03
Issue: 06
Year: 2010

Journal of Proteomics & Bioinformatics

Author(s): Richard D. Smith
Volume: 02
Issue: 06
Year: 2009

Predicting Secondary Structure of Oxidoreductase Protein Family Using Bayesian Regularization Feed-forward Backpropagation ANN Technique

Author(s): Brijesh Singh Yadav | Mayank Pokhariyal | Barkha Ratta | Gaurava Rai | Meeta Saxena | Bhaskar Sharma | K.P.Mishra
Volume: 03
Issue: 05
Year: 2010

Prediction of MHC Binding Peptides and Epitopes from Coat Protein of Mungbean Yellow Mosaic India Virus-Ub05

Author(s): Sarika | Mohd. Akram | M. A. Iquebal | Naimuddin K
Volume: 03
Issue: 05
Year: 2010

Prediction and Comparative Analysis of MHC Binding Peptides and Epitopes in Nanoviridae Nano-organisms

Author(s): Dangre DM | Deshmukh SR | Rathod DP | Umare VD | Ullah I
Volume: 03
Issue: 05
Year: 2010

In silico Analysis and Homology Modelling of Antioxidant Proteins of Spinach

Author(s): Archna Sahay | Madhvi Shakya
Volume: 03
Issue: 05
Year: 2010

Evaluation of Computational Methods for Secreted Protein Prediction in Different Eukaryotes

Author(s): Xiang Jia Min
Volume: 03
Issue: 05
Year: 2010

Serum Proteomic Profiles in Subjects with Heavy Alcohol Abuse

Author(s): Suthat Liangpunsakul | Xianyin Lai | Heather N. Ringham | David W. Crabb | Frank A. Witzmann
Volume: 02
Issue: 05
Year: 2009

Ranking Methods for the Prediction of Frequent Top Scoring Peptides from Proteomics Data

Author(s): Carsten Henneges | Georg Hinselmann | Stephan Jung | Johannes Madlung | Wolfgang Schütz, et al.
Volume: 02
Issue: 05
Year: 2009

CIT: A Cluster Identification Tool based on Biclustering and Hierarchical Clustering

Author(s): Tabinda Hussain | Ammara Mazhar | Ammad-ud-din | Asif Mir
Volume: 02
Issue: 05
Year: 2009

Quantitative Analysis of Cytokines in Diabetic Nephropathy

Author(s): Srinubabu Gedela | Venkata Phani Bhushan Guruju | Mary Sulakshana | Inavolu Lakshmi Maheswari | T. Prabhakar, et al.
Volume: 02
Issue: 05
Year: 2009

A Statistical Technique for Monoisotopic Peak Detection in a Mass Spectrum

Author(s): Mourad Atlas | Susmita Datta
Volume: 02
Issue: 05
Year: 2009

Differential Proteome of Articular Chondrocytes From Patients with Osteoarthritis

Author(s): Raquel Rollín | Raquel Rollín | Pilar Tornero | Fernando Marco | Emilio Camafeita et al.,
Volume: 01
Issue: 05
Year: 2008

Genomic Methylation Status for Discrimination Among Helicobacter Species: A Bioinformatics Approach

Author(s): Filipa F. Vale | Jorge M. B. Vítor
Volume: 01
Issue: 05
Year: 2008

The Optimized Conditions of Two Dimensional Polyacrylamide Gel Electrophoresis for Serum Proteomics

Author(s): Fengming Gong | Shufang Liang | Chunmei He | Guobo Shen | Yuhuan Xu et al.,
Volume: 01
Issue: 05
Year: 2008

Phospho-Site-Specific Antibody Microarray to Study the State of Protein Phosphorylation in the Retina

Author(s): Raju V.S. Rajala
Volume: 01
Issue: 05
Year: 2008

Pathway Modeling: New face of Graphical Probabilistic Analysis

Author(s): Somnath Tagore | Virendra S. Gomase | Rajat K. De
Volume: 01
Issue: 05
Year: 2008

Whether Transcriptome and Proteome Technical Platforms are Intact to Human Genome now?

Author(s): Fan Zhong | Fuchu He | Fuchu He
Volume: 01
Issue: 05
Year: 2008

Proteome Profile of Zebrafish Brain Based on Gel LC-ESI MS/MS Analysis

Author(s): Sachin Kumar Singh | Komarla Setty Rakesh | Kalidoss Ramamoorthy | Attluri V Pardha Saradhi | Mohammed Mohammed Idris
Volume: 03
Issue: 04
Year: 2010

Interaction of 2009 CTX - M Variants with Drugs and Inhibitors: a Molecular Modeling and Docking Study

Author(s): Shazi Shakil | Asad Ullah Khan
Volume: 03
Issue: 04
Year: 2010

Signaling Networks in Gastric Cancer Cells Revealed by Phosphoproteomics

Author(s): Guang-Rong Yan | Nan-Peng Chen | Ya-Dong Huang | Wen Ding | Gui-Wei He
Volume: 03
Issue: 04
Year: 2010

Molecular Basis of Chemical Chaperone Effects of N-octyl-β-valienamine on Human β-glucosidase in Low/neutral pH Conditions

Author(s): Hiroyuki Jo | Katsuyuki Yugi | Seiichiro Ogawa | Yoshiyuki Suzuki | Yasubumi Sakakibara
Volume: 03
Issue: 04
Year: 2010

Support Vector Machine Classifier for Predicting Drug Binding to P-glycoprotein

Author(s): Karthikeyan Ramaswamy | Mohamed Sadiq | Sridhar V | Nagasuma Chandra
Volume: 02
Issue: 04
Year: 2009

In Silico Analysis of Amino Acid Sequences in Relation to Specificity and Physiochemical Properties of Some Microbial Nitrilases

Author(s): Nikhil Sharma | Rekha Kushwaha | J.S. Sodhi | T. C. Bhalla
Volume: 02
Issue: 04
Year: 2009

Detection of Membranous Protein Alterations on BCG-activated Macrophages Involved in Contact-dependent Tumoricidal Processes

Author(s): Yanni Lun | Lingbing Zhang | Shiming Sun | Dongmei Yan | Bairong Du, et al.
Volume: 02
Issue: 04
Year: 2009

GPDE: A Biological View on PRIDE

Author(s): Johannes Griss | Christopher Gerner
Volume: 02
Issue: 04
Year: 2009

DataBiNS-Viz: A Web-Based Tool for Visualization of Non-Synonymous SNP Data

Author(s): Fong Chun Chan | Edward A. Kawas | Mark D. Wilkinson | Mark D. Wilkinson | Scott J. Tebbutt
Volume: 01
Issue: 04
Year: 2008

IMPPDS - Indian Medicinal Plants Protein Dataset

Author(s): S. Anandakumar | V. Saravanan | P. Shanmughavel
Volume: 01
Issue: 04
Year: 2008

Analysis of Synonymous Codon Usage Bias in Pseudomonas Syringae Phages: Implication in Phage Therapy for Halo Blight Disease

Author(s): Shashank Sharma | Ambrish Sharan Vidyarthi | Raju Poddar
Volume: 01
Issue: 04
Year: 2008

Prediction of MHC Binding Peptides and Epitopes from Groundnut Bud Necrosis Virus (GBNV)

Author(s): Gomase V.S. | Kale K.V. | Shyamkumar K.
Volume: 01
Issue: 04
Year: 2008

Integration and Prediction of PPI Using Multiple Resources from Public Databases

Author(s): Ramón Aragues | Javier García-García | Baldo Oliva
Volume: 01
Issue: 04
Year: 2008

Two-phase Filtering Strategy for Efficient Peptide Identification from Mass Spectrometry

Author(s): Hoong Kee Ng | Kang Ning | Hon Wai Leong
Volume: 03
Issue: 04
Year: 2010

Possible Single Nucleotide Polymorphism (SNP) in the Nucleic Sequence of A-kinase-anchoring Protein 9

Author(s): Viroj Wiwanitkit
Volume: 01
Issue: 04
Year: 2008

Modeling of RNA Secondary Structure of Non Structural Gene and Evolutionary Stability of the Influenza Virus Through In Silico Methods

Author(s): Pallavi Somvanshi | Vijai Singh | M.Arshad
Volume: 01
Issue: 04
Year: 2008

Editorial

Volume: 02
Issue: 04
Year: 2009

Editors & Editorial Board

Author(s): Richard
Volume: 03
Issue: 04
Year: 2010

Mining Unique-m Substrings from Genomes

Author(s): Kai Ye | Zhenyu Jia | Yipeng Wang | Paul Flicek | Rolf Apweiler
Volume: 03
Issue: 03
Year: 2010

Proteomic Analysis of Human Breast Cancer: New Technologies and Clinical Applications for Biomarker Profiling

Author(s): Bechr Hamrita | Hela ben nasr | Karim Chahed | Maria Kabbage | Lotfi Chouchane
Volume: 03
Issue: 03
Year: 2010

In Silico Identification of Dual Ability of N. gonorrhoeae ddl for Developing Drug and Vaccine Against Pathogenic Neisseria and Other Human Pathogens

Author(s): Debmalya Barh | Amarendra Narayan Misra | Anil Kumar
Volume: 03
Issue: 03
Year: 2010

Gel-based Proteomic Characterization of Soluble and Insoluble Fraction Proteins in Rat Spinal Cord

Author(s): Shuguang Yang | Qinxue Ding | Yaojun Guo | Congjian Zhao | Yufeng Jia
Volume: 03
Issue: 03
Year: 2010

Phylogenetic Profiles Reveal Structural and Functional Determinants of Lipid-binding

Author(s): Yoojin Hong | Dimitra Chalkia | Kyung Dae Ko | Gaurav Bhardwaj | Gue Su Chang, et al.
Volume: 02
Issue: 03
Year: 2009

Proteome Analysis of Serum-Containing Conditioned Medium from Primary Astrocyte Cultures

Author(s): Annika Thorsell | Jonas Faijerson | Fredrik Blomstrand | Michael Nilsson | Kaj Blennow et al.,
Volume: 01
Issue: 03
Year: 2008

Prognostic Factors of Male Breast Cancer: Proteomic Approaches for Early Detection and Treatment

Author(s): Jasmine George | Yogeshwer Shukla
Volume: 01
Issue: 03
Year: 2008

Proteomic Analysis for the Purpose of Understanding the Mechanisms of Benzene and X-ray Induced Leukemia Using Human Bone Marrow Cells

Author(s): Katsunori Sasaki | Yoshinori Nishida | Jun Adachi | Katsuya Okawa | Aki Nakayama
Volume: 03
Issue: 03
Year: 2010

SiRNA Scanner - A Fuzzy Logic Based Tool for Small Interference RNA Design

Author(s): Vijayakumar Saravanan | Piramanaygam Shanmughavel
Volume: 01
Issue: 03
Year: 2008

Improving Phosphopeptide/protein Identification using a New Data Mining Framework for MS/MS Spectra Preprocessing

Author(s): Fabio R. Cerqueira | Sandra Morandell | Stefan Ascher | Karl Mechtler | Lukas A. Huber, et al
Volume: 02
Issue: 03
Year: 2009

Role of lrp in the Pseudomonas Aeruginosa Small Colony Formation

Author(s): Dinesh Diraviam Sriramulu
Volume: 02
Issue: 03
Year: 2009

In-silico Interaction Studies of Quinazoline Derivatives for their Inhibitory Action on Both Wild and Mutant EGFRs

Author(s): Kaushik S. Hatti | V. Chandregowda | G.Venkateswara Rao | Anil Kush | G.Chandrasekara Reddy
Volume: 02
Issue: 03
Year: 2009

Identifying Conserved and Divergent Transcriptional Modules by Cross-species Matrix Decomposition on Microarray Data

Author(s): Huai Li | Ming Zhan
Volume: 02
Issue: 03
Year: 2009

Comparative Study of the Efficiency of Three Protein-Ligand Docking Programs

Author(s): Abdelouahab Chikhi | Abderrahmane Bensegueni
Volume: 01
Issue: 03
Year: 2008

In Silico Prediction of Epitopes in Virulence Proteins of Mycobacterium Tuberculosis H37Rv for Diagnostic and Subunit Vaccine Design

Author(s): Pallavi Somvanshi | Vijai Singh | P. K. Seth
Volume: 01
Issue: 03
Year: 2008

In Silico Study of the Selective Inhibition of Bacterial Peptide Deformylases by Several Drugs

Author(s): Abdelouahab Chikhi | Abderrahmane Bensegueni
Volume: 03
Issue: 02
Year: 2010

Comparative Sequence Analysis on Different Strains of Swine Influenza Virus Sub-type H1N1 for Neuraminidase and Hemagglutinin

Author(s): Deepak Kumar Sharma | Anil Kumar Rawat | Shipra Srivastava | Rajeev Srivastava | Ajay Kumar
Volume: 03
Issue: 02
Year: 2010

Clustering Mass Spectral Peaks Increases Recognition Accuracy and Stability of SVM-based Feature Selection

Author(s): Mikhail Pyatnitskiy | Maria Karpova | Sergei Moshkovskii | Andrey Lisitsa | Alexander Archakov
Volume: 03
Issue: 02
Year: 2010

Evaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics

Author(s): Ruben K. Dagda | Tamanna Sultana | James Lyons-Weiler
Volume: 03
Issue: 02
Year: 2010

Hydrophobic Fractionation Enhances Novel Protein Detection by Mass Spectrometry in Triple Negative Breast Cancer

Author(s): Ming Lu | Julian P. Whitelegge
Volume: 03
Issue: 02
Year: 2010

In Silico and In Vivo Study of Lens Regeneration Under the Influence of Retinoid

Author(s): Amit Nagal | O.P. Jangir | P S Solanki | Vijay Singh | M Krishnamohan
Volume: 01
Issue: 02
Year: 2008

Comparative Proteome Analysis of Thalamus and Cortex from Rats Subchronically Treated with Kynurenine and Probenecid

Author(s): Linda Paulson | Linda K. Nilsson- Todd | Klas R. Linderholm | Ann Brinkmalm | Peter S. Eriksson et al.,
Volume: 01
Issue: 02
Year: 2008

Comparative Modeling Of Viral Protein R (Vpr) From Human Immunodeficiency Virus 1 (Hiv 1)

Author(s): Seenivasagan Renganathan | Kasimani Renganathan | Marimuthu Parthiban | Kalidoss Ramamoorthy | Shanmughavel Piramanayagam
Volume: 01
Issue: 02
Year: 2008

Protein Interaction Network. Double Exponential Model

Author(s): Piotr H. Pawlowski | Szymon Kaczanowski | Szymon Kaczanowski | Piotr Zielenkiewicz | Piotr Zielenkiewicz
Volume: 01
Issue: 02
Year: 2008

Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data

Author(s): Zhang-Zhi Hu | Hongzhan Huang | Amrita Cheema | Mira Jung | Anatoly Dritschilo et al.,
Volume: 01
Issue: 02
Year: 2008

Proteome Analysis of Detached Fronds from a Resurrection Plant Selaginella Bryopteris - Response to Dehydration and Rehydration

Author(s): Farah Deeba | Vivek Pandey | Uday Pathre | Sanjeev Kanojiya
Volume: 02
Issue: 02
Year: 2009

An In Silico Approach to Cluster CAM Kinase Protein Sequences

Author(s): U.S.N Murty | Amit Kumar Banerjee | Neelima Arora
Volume: 02
Issue: 02
Year: 2009

Development of a data-mining system for differential profiling of cell glycoproteins based on lectin microarray

Author(s): Atsushi Kuno | Yoko Itakura | Masashi Toyoda | Yoriko Takahashi | Masao Yamada et al.,
Volume: 01
Issue: 02
Year: 2008

Main Pathways of Proteome Simplification in Alphaherpesviruses Under the Influence of the Strong Mutational GC-pressure

Author(s): Vladislav V. Khrustalev | Eugene V. Barkovsky
Volume: 02
Issue: 02
Year: 2009

Adjusted Confidence Intervals for the Expression Change of Proteins Observed in 2-Dimensional Difference Gel Electrophoresis

Author(s): Klaus Jung | Gereon Poschmann | Katharina Podwojski | Martin Eisenacher | Michael Kohl et al.
Volume: 02
Issue: 02
Year: 2009

Medaka Proteome Study: Use of Cross-species Matching and Expressed Sequence Tag Data for Protein Identification

Author(s): Mezhoud Karim | Praseuth Danièle | Marie Arul | Puiseux-Dao Simone | Edery Marc
Volume: 02
Issue: 02
Year: 2009

Proteolytic Enzymes Database

Author(s): Parveen Salahuddin | Asad U Khan | Asad U Khan
Volume: 01
Issue: 02
Year: 2008

Functional Protein Analysis of Hypertriglyceridemia: A Bioinformatic Approach

Author(s): V. S. Rao | S. K.Das | V. J. Rao
Volume: 01
Issue: 02
Year: 2008

Exploring the Interplay of Sequence and Structural Features in Determiming the Flexibility of AGC Kinase Protein Family : A Bioinformatics Approach

Author(s): Amit Kumar Banerjee | Neelima Arora | Varakantham Pranitha | U.S.N.Murty
Volume: 01
Issue: 02
Year: 2008

Pharmacophore Modeling and Virtual Screening Studies to Design Potential Protein Tyrosine Phosphatase 1B Inhibitors as New Leads

Author(s): Neelakantan Suresh | N. S. Vasanthi
Volume: 03
Issue: 01
Year: 2010

Proteome Analysis of a Food Borne Pathogen Enteroaggregative Escherichia coli under Acid Stress

Author(s): Punit Kaur | Anuradha Chakraborti
Volume: 03
Issue: 01
Year: 2010

Computational Analysis of Mutations in Neonatal Diabetes (KCNJ11) Gene Reveals no Relation with Microsatellites

Author(s): Allam Appa Rao | Gunna Kishore | Ravikanth Satapati | Susmitha Gogula
Volume: 01.1
Issue: 01
Year: 2008

Computational Analysis of Mutations in Colon Cancer Genes Reveals a Possible Role of Micro Satellite in Mutagenesis

Author(s): Allam Appa Rao | G R Sridhar | Suresh B Mudunuri | E Vamsidhar | Gunna Kishore
Volume: 01.1
Issue: 01
Year: 2008

In Silico Analysis of Alkaline Shock Proteins in Enterobacteria

Author(s): Seetharaaman Balaji | V. Murali Krishnan
Volume: 01.1
Issue: 01
Year: 2008

Computational Simulation of Mitoxantrone Binding with Human Serum Albumin

Author(s): Shahper N. Khan | Asad U. Khan
Volume: 01.1
Issue: 01
Year: 2008

Concurrency of Mutations, Microsatellites and Predicted Domains in kcnq1, kcnh2 and scn5a Genes Causing Long qt Syndrome Disease

Author(s): Allam Appa Rao | G Venkata Swamy | B L V Vinay Kumar | Ch S U Ravi Kumar
Volume: 01.1
Issue: 01
Year: 2008

Computational Analysis of Microsatellites in Human Insulin Promoter Factor 1 Gene

Author(s): Allam Appa Rao | Suresh B Mudunuri
Volume: 01.1
Issue: 01
Year: 2008

BIOUROLOGY.COM

Author(s): Uría González-Tova Juan | Mora Durban Miguel | Saladié Roig Jose María
Volume: 02
Issue: 01
Year: 2009

GExMap: An Intuitive Visual Tool to Detect and Analyze Genomic Distribution in Microarray-generated Lists of Differentially Expressed Genes

Author(s): Nicolas Cagnard | Carlo Lucchesi | Gilles Chiocchia
Volume: 02
Issue: 01
Year: 2009

Homology Modeling and Functional Analysis of LPG2 Protein of Leishmania Strains

Author(s): Ganesh Chandra Sahoo | Manas Ranjan Dikhit | Mukta Rani | Pradeep Das
Volume: 02
Issue: 01
Year: 2009

Principal Component Analysis of Proteome Dynamics in Iron-starved Mycobacterium Tuberculosis

Author(s): Prahlad K. Rao | Qingbo Li
Volume: 02
Issue: 01
Year: 2009

The Proteomic Profile of Pancreatic Cancer Cell Lines Corresponding to Carcinogenesis and Metastasis

Author(s): Masayo Yamada | Kiyonaga Fujii | Koji Koyama | Setsuo Hirohashi | Tadashi Kondo
Volume: 02
Issue: 01
Year: 2009

AC2DGel: Analysis and Comparison of 2D Gels

Author(s): Amit Kush | G.P.S. Raghava
Volume: 01
Issue: 01
Year: 2008

Bioinformatic Analysis of Alzheimer’s Disease Using Functional Protein Sequences

Author(s): Allam Appa Rao | Kiran Kumar Reddi | Hanuman Thota
Volume: 01
Issue: 01
Year: 2008

The Use of Conjunctival Swab for the Proteomic Characterisation of Dry Eye Syndrome

Author(s): Joanna Graham | Robert L.J. Graham | Raymond Beirne | Victoria E. McGilligan | Jonathan E. Moore et al.,
Volume: 01
Issue: 01
Year: 2008

Changes of Serum Glycoproteins in Lung Cancer Patients

Author(s): Tran The Thanh | Nguyen Thi Minh Phuong | Nguyen Bich Nhi | Phan Van Chi
Volume: 01
Issue: 01
Year: 2008

Automated Calculation of Unique Peptide Sequences for Unambiguous Identification of Highly Homologous Proteins by Mass Spectrometry

Author(s): Michael Kohl | Gorden Redlich | Martin Eisenacher | Anke Schnabel | Helmut E. Meyer et al.,
Volume: 01
Issue: 01
Year: 2008

How to Solve Complex Scientific Challenges with Comprehensive Proteomics and Bioinformatics means - HUPO Brain Proteome Project

Author(s): Christian Stephan | Michael Hamacher | Helmut E. Meyer
Volume: 01
Issue: 01
Year: 2008

Microarray Analysis of Differentially Expressed Genes Between Diabetes vs Healthy

Author(s): Allam Appa Rao | Shyambabu M | Srinubabu Gedela
Volume: 01.1
Issue: 01
Year: 2008

Bioinformatic Analysis of Alzheimer’s Disease and Type2 Diabetes Mellitus: A Bioinformatic Approach

Author(s): Allam Appa Rao | Siva Prasad Akula | Hanuman Thota | Srinubabu Gedela
Volume: 01.1
Issue: 01
Year: 2008

Study of Microsatellites Role in BRCA2 Gene Causing Pancreatic Cancer and Breast Cancer

Author(s): Appa Rao Allam | Sridhar R Gumpeny | MN Vamsi Thalatam | S Sita Ram Babu | N Ravi Shankar, et al.
Volume: 01.1
Issue: 01
Year: 2008

Methodology for Phylogenetic Tree Construction

Author(s): Kudipudi Srinivas | Allam Appa Rao | GR Sridhar | Srinubabu Gedela
Volume: 01.1
Issue: 01
Year: 2008

IntGeom: A Server for the Calculation of the Interaction Geometry between Planar Groups in Proteins

Author(s): Arumay Pal | Rajasri Bhattacharyya | Maitrayee Dasgupta | Saptarshi Mandal | Pinak Chakrabarti
Volume: 02
Issue: 01
Year: 2009

Primer Designing for Dreb1A, A Cold Induced Gene

Author(s): Neha Garg | Neha Garg | Sachin Pundhir | Anil Prakash | Anil Kumar
Volume: 01
Issue: 01
Year: 2008

Standardising Proteomics Data – the work of the HUPO Proteomics Standards Initiative

Author(s): Sandra Orchard | Henning Hermjakob
Volume: 01
Issue: 01
Year: 2008

Detection of Abundant Proteins in Multiple Myeloma Cells by Proteomics

Author(s): Chun-Hua Lu | Feng Ge | Zhi Liu | Rong Li | Chuan-Le Xiao | Hui-Lan Zeng | Xin-Peng Lu | Qing-Yu He
Volume: 03
Issue: 01
Year: 2010

Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information

Author(s): Ken J. Auberry | Gary R. Kiebel | Matthew E. Monroe | Joshua N. Adkins | Gordon A. Anderson | Richard D. Smith
Volume: 03
Issue: 01
Year: 2010