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Cancer Informatics

ISSN: 1176--9351
Publisher: Libertas Academica


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Advancing Cancer Systems Biology: Introducing the Center for the Development of a Virtual Tumor, CViT

Author(s): Thomas S. Deisboeck | Le Zhang | Sean Martin
Volume: 5
Issue: Systems Biology
Year: 2007
Perturbation of Interaction Networks for Application to Cancer Therapy

Author(s): Adrian P. Quayle | Asim S. Siddiqui | Steven J. M. Jones
Volume: 5
Issue: Systems Biology
Year: 2007
Exploratory Visual Analysis of Statistical Results from Microarray Experiments Comparing High and Low Grade Glioma

Author(s): David M. Reif | Mark A. Israel | Jason H. Moore
Volume: 5
Issue: Systems Biology
Year: 2007
Application of Gene Shaving and Mixture Models to Cluster Microarray Gene Expression Data

Author(s): K-A. Do | G.J. McLachlan | R. Bean | S. Wen
Volume: 5
Issue: Systems Biology
Year: 2007
Cancer as a System Failure

Author(s): Dennis Wigle | Igor Jurisica
Volume: 5
Issue: Systems Biology
Year: 2007
Integration of Neuroimaging and Microarray Datasets  through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes

Author(s): Spiro P. Pantazatos | Jianrong Li | Paul Pavlidis | Yves A. Lussier
Volume: 2009
Issue: Semantic Technologie
Year: 2009
Using Semantic Web Technologies to Annotate and Align Microarray Designs

Author(s): Sebastian Szpakowski | James McCusker | Michael Krauthammer
Volume: 2009
Issue: Semantic Technologie
Year: 2009
Development of the Lymphoma Enterprise Architecture Database: A caBIG(TM) Silver Level Compliant System

Author(s): Taoying Huang | Pareen J. Shenoy | Rajni Sinha | Michael Graiser | Kevin W. Bumpers | Christopher R. Flowers
Volume: 2009
Issue: Semantic Technologie
Year: 2009
A Novel Information Retrieval Model for High-Throughput Molecular Medicine Modalities

Author(s): Firas H. Wehbe | Steven H. Brown | Pierre P. Massion | Cynthia S. Gadd | Daniel R. Masys | Constantin F. Aliferis
Volume: 2009
Issue: Semantic Technologie
Year: 2009
Semantic Integration of Cervical Cancer Data Repositories to Facilitate Multicenter Association Studies: The ASSIST Approach

Author(s): Theodoros Agorastos | Vassilis Koutkias | Manolis Falelakis | Irini Lekka | Themistoklis Mikos | Anastasios Delopoulos | Pericles A. Mitkas | Antonios Tantsis | Steven Weyers | Pascal Coorevits | Andreas M. Kaufmann | Roberto Kurzeja | Nicos Maglaveras
Volume: 2009
Issue: Semantic Technologie
Year: 2009
Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data

Author(s): Matthew E. Holford | Haseena Rajeevan | Hongyu Zhao | Kenneth K. Kidd | Kei-Hoi Cheung
Volume: 2009
Issue: Semantic Technologie
Year: 2009
Development of the Lymphoma Enterprise Architecture Database: A caBIG(TM) Silver Level Compliant System

Author(s): Taoying Huang | Pareen J. Shenoy | Rajni Sinha | Michael Graiser | Kevin W. Bumpers | Christopher R. Flowers
Volume: 8
Issue: Semantic Technologie
Year: 2009
Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data

Author(s): E. Holford | Haseena Rajeevan | Hongyu Zhao | Kenneth K. Kidd | Kei-Hoi Cheung
Volume: 8
Issue: Semantic Technologie
Year: 2009
Semantic Integration of Cervical Cancer Data Repositories to Facilitate Multicenter Association Studies: The ASSIST Approach

Author(s): Theodoros Agorastos | Vassilis Koutkias | Manolis Falelakis | Irini Lekka | Themistoklis Mikos | Anastasios Delopoulos | Pericles A. Mitkas | Antonios Tantsis | Steven Weyers | Pascal Coorevits | Andreas M. Kaufmann | Roberto Kurzeja | Nicos Maglaveras
Volume: 8
Issue: Semantic Technologie
Year: 2009
Using Semantic Web Technologies to Annotate and Align Microarray Designs

Author(s): Sebastian Szpakowski | James McCusker | Michael Krauthammer
Volume: 8
Issue: Semantic Technologie
Year: 2009
A Novel Information Retrieval Model for High-Throughput Molecular Medicine Modalities

Author(s): Firas H. Wehbe | Steven H. Brown | Pierre P. Massion | Cynthia S. Gadd | Daniel R. Masys | Constantin F. Aliferis
Volume: 8
Issue: Semantic Technologie
Year: 2009
Change Detection & Characterization: a New Tool for Imaging Informatics and Cancer Research

Author(s): Julia W. Patriarche | Bradley J. Erickson
Volume: 4
Issue: Imaging
Year: 2007
An Architecture for Computer-Aided Detection and Radiologic Measurement of Lung Nodules in Clinical Trials

Author(s): Matthew S. Brown | Richard Pais | Peiyuan Qing | Sumit Shah | Michael F. McNitt-Gray | Jonathan G. Goldin | Iva Petkovska | Lien Tran | Denise R. Aberle
Volume: 4
Issue: Imaging
Year: 2007
DICOM Structured Reporting and Cancer Clinical Trials Results

Author(s): David A. Clunie
Volume: 4
Issue: Imaging
Year: 2007
Image Registration Improves Confidence and Accuracy of Image Interpretation

Author(s): Bradley J. Erickson | Julia Patriarche | Christopher Wood | Norbert Campeau | E. Paul Lindell | Vladimir Savcenko | Norman Arslanlar | Liqin Wang
Volume: 4
Issue: Imaging
Year: 2007
Imaging in Clinical Trials

Author(s): Bradley J Erickson | Jan C Buckner
Volume: 4
Issue: Imaging
Year: 2007
Weibull-like Model of Cancer Development in Aging

Author(s): Tengiz Mdzinarishvili | Simon Sherman
Volume: 2010
Issue: 9
Year: 2010
Inhibition of Antiapoptotic BCL-XL, BCL-2, and MCL-1 Proteins by Small Molecule Mimetics

Author(s): D.S. Dalafave | G. Prisco
Volume: 2010
Issue: 9
Year: 2010
Relationship between Selected Socio-Demographic Factors and Cancer of Oral Cavity - A Case Control Study

Author(s): Abdoul Hossain Madani | Madhurima Dikshit | Debanshu Bhaduri | Abdolreza Sotoodeh Jahromi | Teamur Aghamolaei
Volume: 2010
Issue: 9
Year: 2010
Clinical Omics Analysis of Colorectal Cancer Incorporating Copy Number Aberrations and Gene Expression Data

Author(s): Tsuyoshi Yoshida | Takumi Kobayashi | Masaya Itoda | Taika Muto | Ken Miyaguchi | Kaoru Mogushi | Satoshi Shoji | Kazuro Shimokawa | Satoru Iida | Hiroyuki Uetake | Toshiaki Ishikawa | Kenichi Sugihara | Hiroshi Mizushima | Hiroshi Tanaka
Volume: 2010
Issue: 9
Year: 2010
Optimal Network Alignment with Graphlet Degree Vectors

Author(s): Tijana Milenković | Weng Leong Ng | Wayne Hayes | Nataša Pržulj
Volume: 2010
Issue: 9
Year: 2010
Development and Validation of Predictive Indices for a Continuous Outcome Using Gene Expression Profiles

Author(s): Yingdong Zhao | Richard Simon
Volume: 2010
Issue: 9
Year: 2010
A Penalized Mixture Model Approach in Genotype/Phenotype Association Analysis for Quantitative Phenotypes

Author(s): Lang Li | Silvana Borges | Robarge D. Jason | Changyu Shen | Zeruesenay Desta | David Flockhart
Volume: 2010
Issue: 9
Year: 2010
Genes with Relevance for Early to Late Progression of Colon Carcinoma Based on Combined Genomic and Transcriptomic Information from the Same Patients

Author(s): Kristina K. Lagerstedt | Erik Kristiansson | Christina Lönnroth | Marianne Andersson | Britt-Marie Iresjö | Annika Gustafsson | Elisabeth Hansson | Ulf Kressner | Svante Nordgren | Fredrik Enlund | Kent Lundholm
Volume: 2010
Issue: 9
Year: 2010
Estimation of Hazard Functions in the Log-Linear Age-Period-Cohort Model: Application to Lung Cancer Risk Associated with Geographical Area

Author(s): Tengiz Mdzinarishvili | Michael X. Gleason | Simon Sherman
Volume: 2010
Issue: 9
Year: 2010
Protein-protein Interaction Reveals Synergistic Discrimination of Cancer Phenotype

Author(s): Jianghui Xiong | Juan Liu | Simon Rayner | Yinghui Li | Shanguang Chen
Volume: 2010
Issue: 9
Year: 2010
Characterization of the Effectiveness of Reporting Lists of Small Feature Sets Relative to the Accuracy of the Prior Biological Knowledge

Author(s): Chen Zhao | Michael L. Bittner | Robert S. Chapkin | Edward R. Dougherty
Volume: 2010
Issue: 9
Year: 2010
Comparison of Two Output-Coding Strategies for Multi-Class Tumor Classification Using Gene Expression Data and Latent Variable Model as Binary Classifier

Author(s): Sandeep J. Joseph | Kelly R. Robbins | Wensheng Zhang | Romdhane Rekaya
Volume: 2010
Issue: 9
Year: 2010
Expression a La Bimode

Author(s): James C. Willey
Volume: 2010
Issue: 9
Year: 2010
A Robust Gene Selection Method for Microarray-based Cancer Classification

Author(s): Xiaosheng Wang | Osamu Gotoh
Volume: 2010
Issue: 9
Year: 2010
Bimodal Gene Expression and Biomarker Discovery

Author(s): Adam Ertel
Volume: 2010
Issue: 9
Year: 2010
Dual KS: Defining Gene Sets with Tissue Set Enrichment Analysis

Author(s): Yarong Yang | Eric J. Kort | Nader Ebrahimi | Zhongfa Zhang | Bin T. Teh
Volume: 2010
Issue: 9
Year: 2010
Heterogeneity Between Ducts of the Same Nuclear Grade Involved by Duct Carcinoma In Situ (DCIS) of the Breast

Author(s): Naomi A. Miller | Judith-Anne W. Chapman | Jin Qian | William A. Christens-Barry | Yuejiao Fu | Yan Yuan | H. Lavina A. Lickley | David E. Axelrod
Volume: 2010
Issue: 9
Year: 2010
Estimating Shared Copy Number Aberrations for Array CGH Data: The Linear-Median Method

Author(s): Y.-X. Lin | V. Baladandayuthapani | V. Bonato | K.-A. Do
Volume: 2010
Issue: 9
Year: 2010
LTR: Linear Cross-Platform Integration of Microarray Data

Author(s): Paul C. Boutros
Volume: 2010
Issue: 9
Year: 2010
Rough Set Soft Computing Cancer Classification and Network: One Stone, Two Birds

Author(s): Yue Zhang
Volume: 2010
Issue: 9
Year: 2010
An Efficient Gatekeeper Algorithm for Detecting GxE

Author(s): Jimmy T. Efird
Volume: 2010
Issue: 9
Year: 2010
The Power of the Web in Cancer Drug Discovery and Clinical Trial Design: Research without a Laboratory?

Author(s): Christine Galustian | Angus G. Dalgleish
Volume: 2010
Issue: 9
Year: 2010
Identification of Predictive Pathways for Non-Hodgkin Lymphoma Prognosis

Author(s): Xuesong Han | Yang Li | Jian Huang | Yawei Zhang | Theodore Holford | Qing Lan | Nathaniel Rothman | Tongzhang Zheng | Michael R. Kosorok | Shuangge Ma
Volume: 2010
Issue: 9
Year: 2010
Sinusoidal Cox Regression—A Rare Cancer Example

Author(s): Jimmy Thomas Efird
Volume: 2010
Issue: 9
Year: 2010
Cross-platform Comparison of Two Pancreatic Cancer Phenotypes

Author(s): Robert B. Scharpf | Christine A. Iacobuzio-Donahue | Leslie Cope | Ingo Ruczinski | Elizabeth Garrett-Mayer | Sindhu Lakkur | Domenico Campagna | Giovanni Parmigiani
Volume: 2010
Issue: 9
Year: 2010
Blasted Cell Line Names

Author(s): Jing Wang | Lauren A. Byers | John S. Yordy | Wenbin Liu | Li Shen | Keith A. Baggerly | Uma Giri | Jeffrey N. Myers | K. Kian Ang | Michael D. Story | Luc Girard | John D. Minna | John V. Heymach | Kevin R. Coombes
Volume: 2010
Issue: 9
Year: 2010
Professional Networks in the Life Sciences: Linking the Linked

Author(s): Thomas S. Deisboeck | Jonathan Sagotsky
Volume: 2010
Issue: 9
Year: 2010
Modeling Prognostic Factors in Resectable Pancreatic Adenocarcinomas

Author(s): Taxiarchis Botsis | Valsamo K. Anagnostou | Gunnar Hartvigsen | George Hripcsak | Chunhua Weng
Volume: 2009
Issue: 7
Year: 2010
A Novel Approach for Analysis of the Log-Linear Age-Period-Cohort Model: Application to Lung Cancer Incidence

Author(s): Tengiz Mdzinarishvili | Michael X. Gleason | Simon Sherman
Volume: 2009
Issue: 7
Year: 2009
Discrimination of Carcinogens by Hepatic Transcript Profiling in Rats Following 28-day Administration

Author(s): Hiroshi Matsumoto | Yoshikuni Yakabe | Koichi Saito | Kayo Sumida | Masaru Sekijima | Koji Nakayama | Hideki Miyaura | Fumiyo Saito | Masanori Otsuka | Tomoyuki Shirai
Volume: 2009
Issue: 7
Year: 2009
Gene Expression Meta-Analysis identifies Cytokine Pathways and 5q Aberrations involved in Metastasis of ERBB2 Amplified and Basal Breast Cancer

Author(s): Mads Thomassen | Qihua Tan | Mark Burton | Torben A. Kruse
Volume: 2013
Issue: 12
Year: 2013
Monitoring of Technical Variation in Quantitative High-Throughput Datasets

Author(s): Martin Lauss | Ilhami Visne | Albert Kriegner | Markus Ringnér | Göran Jönsson | Mattias Höglund
Volume: 2013
Issue: 12
Year: 2013
Novel Integrative Genomics Approach for Associating GWAS Information with Intrinsic Subtypes of Breast Cancer

Author(s): Chindo Hicks | Tejaswi Koganti | Alexandra S. Brown | Jesus Monico | Kandis Backus | Lucio Miele
Volume: 2013
Issue: 12
Year: 2013
Dealing with Diversity in Computational Cancer Modeling

Author(s): David Johnson | Steve McKeever | Georgios Stamatakos | Dimitra Dionysiou | Norbert Graf | Vangelis Sakkalis | Konstantinos Marias | Zhihui Wang | Thomas S. Deisboeck
Volume: 2013
Issue: 12
Year: 2013
An Empirical Evaluation of Normalization Methods for MicroRNA Arrays in a Liposarcoma Study

Author(s): Li-Xuan Qin | Tom Tuschl | Samuel Singer
Volume: 2013
Issue: 12
Year: 2013
Prognostic Estimator of Survival for Patients with Localized and Extended Pancreatic Ductal Adenocarcinoma

Author(s): Michael X. Gleason | Tengiz Mdzinarishvili | Chandrakanth Are | Aaron Sasson | Alexander Sherman | Oleg Shats | Simon Sherman,
Volume: 2013
Issue: 12
Year: 2013
Basic Equations and Computing Procedures for Frailty Modeling of Carcinogenesis: Application to Pancreatic Cancer Data

Author(s): Tengiz Mdzinarishvili | Simon Sherman
Volume: 2013
Issue: 12
Year: 2013
Classification of Tumor Samples from Expression Data Using Decision Trunks

Author(s): Benjamin Ulfenborg | Karin Klinga-Levan | Björn Olsson
Volume: 2013
Issue: 12
Year: 2013
In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers

Author(s): Yuriy Gusev | Rebecca B. Riggins | Krithika Bhuvaneshwar | Robinder Gauba | Laura Sheahan | Robert Clarke | Subha Madhavan
Volume: 2013
Issue: 12
Year: 2013
Design of an Expert System for Mitigating Trace Element Toxicity in Cancer Risk Management

Author(s): P.T. Krishna Kumar | P.T. Vinod | Vir V. Phoha | S.S. Iyengar | Puneeth Iyengar
Volume: 2013
Issue: 12
Year: 2013
An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer

Author(s): Chindo Hicks | Ranjit Kumar | Antonio Pannuti | Kandis Backus | Alexandra Brown | Jesus Monico | Lucio Miele
Volume: 2013
Issue: 12
Year: 2013
Prediction of Breast Cancer Metastasis by Gene Expression Profiles: A Comparison of Metagenes and Single Genes

Author(s): Mark Burton | Mads Thomassen | Qihua Tan | Torben A. Kruse
Volume: 2012
Issue: 11
Year: 2012
Mapping the Future—Merging the Old with the New Across Disciplines

Author(s): J.T. Efird
Volume: 2012
Issue: 11
Year: 2012
Newton, Laplace, and The Epistemology of Systems Biology

Author(s): Michae L. Bittner | Edward R. Dougherty
Volume: 2012
Issue: 11
Year: 2012
TNBCtype: A Subtyping Tool for Triple-Negative Breast Cancer

Author(s): Xi Chen | Jiang Li | William H. Gray | Brian D. Lehmann | Joshua A. Bauer | Yu Shyr | Jennifer A. Pietenpol
Volume: 2012
Issue: 11
Year: 2012
Identification of a Gene Expression Signature Common to Distinct Cancer Pathways

Author(s): Niklaus Fankhauser | Igor Cima | Peter Wild | Wilhelm Krek
Volume: 2012
Issue: 11
Year: 2012
In Silico Prediction for Regulation of Transcription Factors onTheir Shared Target Genes Indicates Relevant Clinical Implications in a Breast Cancer Population

Author(s): Li-Yu D Liu | Li-Yun Chang | Wen-Hung Kuo | Hsiao-Lin Hwa | Ming-Kwang Shyu | King-Jen Chang | Fon-Jou Hsieh
Volume: 2012
Issue: 11
Year: 2012
Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots

Author(s): E. Shannon Neeley | Keith A. Baggerly | Steven M. Kornblau
Volume: 2012
Issue: 11
Year: 2012
Gene Selection using a High-Dimensional Regression Model with Microarrays in Cancer Prognostic Studies

Author(s): Shuhei Kaneko | Akihiro Hirakawa | Chikuma Hamada
Volume: 2012
Issue: 11
Year: 2012
A Systems Biology Approach in Therapeutic Response Study for Different Dosing Regimens—a Modeling Study of Drug Effects on Tumor Growth using Hybrid Systems

Author(s): Xiangfang Li | Lijun Qian | Michale L. Bittner | Edward R. Dougherty
Volume: 2012
Issue: 11
Year: 2012
Evaluating Translocation Gene Fusions by SNP Array Data

Author(s): Hong Liu | Asher Zilberstein | Pascal Pannier | Frederic Fleche | Christopher Arendt | Christoph Lengauer | Chang S. Hahn
Volume: 2012
Issue: 11
Year: 2011
Linear Discriminant Functions in Connection with the micro-RNA Diagnosis of Colon Cancer

Author(s): Jason B. Nikas | Walter C. Low
Volume: 2012
Issue: 11
Year: 2011
Metagenes Associated with Survival in Non-Small Cell Lung Cancer

Author(s): Egon Urgard | Tõnu Vooder | Urmo Võsa | Kristjan Välk | Mingming Liu | Cheng Luo | Fabian Hoti | Retlav Roosipuu | Tarmo Annilo | Jukka Laine | Christopher M. Frenz | Liqing Zhang | Andres Metspalu
Volume: 2011
Issue: 10
Year: 2011
Model-Integrated Estimation of Normal Tissue Contamination for Cancer SNP Allelic Copy Number Data

Author(s): Susann Stjernqvist | Tobias Rydén | Chris D. Greenman
Volume: 2011
Issue: 10
Year: 2011
GENT: Gene Expression Database of Normal and Tumor Tissues

Author(s): Gwangsik Shin | Tae-Wook Kang | Sungjin Yang | Su-Jin Baek | Yong-Su Jeong | Seon-Young Kim
Volume: 2011
Issue: 10
Year: 2011
A Jackknife and Voting Classifier Approach to Feature Selection and Classification

Author(s): Sandra L. Taylor | Kyoungmi Kim
Volume: 2011
Issue: 10
Year: 2011
A Comparison of Methods for Data-Driven Cancer Outlier Discovery, and An Application Scheme to Semisupervised Predictive Biomarker Discovery

Author(s): Seppo Karrila | Julian Hock Ean Lee | Greg Tucker-Kellogg
Volume: 2011
Issue: 10
Year: 2011
Associating GWAS Information with the Notch Signaling Pathway Using Transcription Profiling

Author(s): Chindo Hicks | Antonio Pannuti | Lucio Miele
Volume: 2011
Issue: 10
Year: 2011
An Integrative Genomics Approach to Biomarker Discovery in Breast Cancer

Author(s): Chindo Hicks | Rozana Asfour | Antonio Pannuti | Lucio Miele
Volume: 2011
Issue: 10
Year: 2011
Multicenter Breast Cancer Collaborative Registry

Author(s): Simon Sherman | Oleg Shats | Elizabeth Fleissner | George Bascom | Kevin Yiee | Mehmet Copur | Kate Crow | James Rooney | Zubeena Mateen | Marsha A. Ketcham | Jianmin Feng | Alexander Sherman | Michael Gleason | Leo Kinarsky | Edibaldo Silva-Lopez | James Edney | Elizabeth Reed | Ann Berger | Kenneth Cowan
Volume: 2011
Issue: 10
Year: 2011
Cellular Imaging Using Equivalent Cross-Relaxation Rate Technique in Rabbit VX-2 Tumor Model

Author(s): Hideyuki Nishiofuku | Shigeru Matsushima | Osamu Taguchi | Yoshitaka Inaba | Hidekazu Yamaura | Yozo Sato | Toshihiro Tanaka | Kimihiko Kichikawa
Volume: 2011
Issue: 10
Year: 2011
On Differential Gene Expression Using RNA-Seq Data

Author(s): Juhee Lee | Yuan Ji | Shoudan Liang | Guoshuai Cai | Peter Müller
Volume: 2011
Issue: 10
Year: 2011
Mathematical Prognostic Biomarker Models for Treatment Response and Survival in Epithelial Ovarian Cancer

Author(s): Jason B. Nikas | Kristin L.M. Boylan | Amy P.N. Skubitz | Walter C. Low
Volume: 2011
Issue: 10
Year: 2011
New Short Term Prediction Method for Chemical Carcinogenicity by Hepatic Transcript Profiling Following 28-Day Toxicity Tests in Rats

Author(s): Hiroshi Matsumoto | Yoshikuni Yakabe | Fumiyo Saito | Koichi Saito | Kayo Sumida | Masaru Sekijima | Koji Nakayama | Hideki Miyaura | Masanori Otsuka | Tomoyuki Shirai
Volume: 2011
Issue: 10
Year: 2011
Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations

Author(s): Hongmei Jiang | Zhong-Zheng Zhu | Yue Yu | Simon Lin | Lifang Hou
Volume: 2011
Issue: 10
Year: 2011
Mouse 11β-Hydroxysteroid Dehydrogenase Type 2 for Human Application: Homology Modeling, Structural Analysis and Ligand-Receptor Interaction

Author(s): Hideaki Yamaguchi | Tatsuo Akitaya | Yumi Kidachi | Katsuyoshi Kamiie | Toshiro Noshita | Hironori Umetsu | Kazuo Ryoyama
Volume: 2011
Issue: 10
Year: 2011
Aberrant Signaling Pathways in Squamous Cell Lung Carcinoma

Author(s): Ivy Shi, | Nooshin Hashemi Sadraei | Zhong-Hui Duan | Ting Shi
Volume: 2011
Issue: 10
Year: 2011
PCCR: Pancreatic Cancer Collaborative Registry

Author(s): Simon Sherman | Oleg Shats | Marsha A. Ketcham | Michelle A. Anderson | David C. Whitcomb | Henry T. Lynch | Paola Ghiorzo | Wendy S. Rubinstein | Aaron R. Sasson | William E. Grizzle | Gleb Haynatzki | Jianmin Feng | Alexander Sherman | Leo Kinarsky | Randall E. Brand
Volume: 2011
Issue: 10
Year: 2011
Self-Calibrated Warping for Mass Spectra Alignment

Author(s): Q. Peter He | Jin Wang | James A. Mobley | Joshua Richman | William E. Grizzle
Volume: 2011
Issue: 10
Year: 2011
Extension of Cox Proportional Hazard Model for Estimation of Interrelated Age-Period-Cohort Effects on Cancer Survival

Author(s): Tengiz Mdzinarishvili | Michael X. Gleason | Leo Kinarsky | Simon Sherman
Volume: 2011
Issue: 10
Year: 2011
In silico Analysis of Combinatorial microRNA Activity Reveals Target Genes and Pathways Associated with Breast Cancer Metastasis

Author(s): Alan A. Dombkowski | Zakia Sultana | Douglas B. Craig | Hasan Jamil
Volume: 2011
Issue: 10
Year: 2011
Reproducibility of SELDI Spectra Across Time and Laboratories

Author(s): Lixia Diao | Charlotte H. Clarke | Kevin R. Coombes | Stanley R. Hamilton | Jack Roth | Li Mao | Bogdan Czerniak | Keith A. Baggerly | Jeffrey S. Morris | Eric T. Fung | Robert C. Bast Jr
Volume: 2011
Issue: 10
Year: 2011
Skin Cancer Recognition by Using a Neuro-Fuzzy System

Author(s): Bareqa Salah | Mohammad Alshraideh | Rasha Beidas | Ferial Hayajneh
Volume: 2011
Issue: 10
Year: 2011
Efficiency Analysis of Competing Tests for Finding Differentially Expressed Genes in Lung Adenocarcinoma

Author(s): Rick Jordan | Satish Patel | Hai Hu | James Lyons-Weiler
Volume: 6
Year: 2008
Detecting Role Errors in the Gene Hierarchy of the NCI Thesaurus

Author(s): Hua Min | Barry Cohen | Michael Halper | Marc Oren | Yehoshua Perl
Volume: 6
Year: 2008
An Analysis of Risk Factors for Developing Hepatocellular Carcinoma in a Group of Hepatitis C Patients with Stage 3 Fibrosis following Interferon Therapy

Author(s): Sabina Mahmood | Kazumi Togawa | Miwa Kawanaka | Gouichi Niiyama | Gotaro Yamada
Volume: 6
Year: 2008
A Biological Evaluation of Six Gene Set Analysis Methods for Identification of Differentially Expressed Pathways in Microarray Data

Author(s): Irina Dinu | Qi Liu | John D. Potter | Adeniyi J. Adewale | Gian S. Jhangri | Thomas Mueller | Gunilla Einecke | Konrad Famulsky | Philip Halloran | Yutaka Yasui
Volume: 6
Year: 2008
Magellan: A Web Based System for the Integrated Analysis of Heterogeneous Biological Data and Annotations; Application to DNA Copy Number and Expression Data in Ovarian Cancer

Author(s): Chris B. Kingsley | Wen-Lin Kuo | Daniel Polikoff | Andy Berchuck | Joe W. Gray | Ajay N. Jain
Volume: 2
Year: 2006
Bioinformatics resources for cancer research with an emphasis on gene function and structure prediction tools

Author(s): Daisuke Kihara | Yifeng David Yang | Troy Hawkins
Volume: 2
Year: 2006
aCGHViewer: A Generic Visualization Tool For aCGH data

Author(s): Ganesh Shankar | Michael R. Rossi | Devin E. McQuaid | Jeffrey M. Conroy | Daniel G. Gaile | John K. Cowell | Norma J. Nowak | Ping Liang
Volume: 2
Year: 2006
Applications of Machine Learning in Cancer Prediction and Prognosis

Author(s): Joseph A. Cruz | David S. Wishart
Volume: 2
Year: 2006
Merging microarray data, robust feature selection, and predicting prognosis in prostate cancer

Author(s): Jing Wang | Kim Anh Do | Sijin Wen | Spyros Tsavachidis | Timothy J. McDonnell | Christopher J. Logothetis | Kevin R. Coombes
Volume: 2
Year: 2006
On the Number of Close-to-Optimal Feature Sets

Author(s): Edward R. Dougherty | Marcel Brun
Volume: 2
Year: 2006
Ovarian Cancer Classification based on Mass Spectrometry Analysis of Sera

Author(s): Baolin Wu | Tom Abbott | David Fishman | Walter McMurray | Gil Mor | Kathryn Stone | David Ward | Kenneth Williams | Hongyu Zhao
Volume: 2
Year: 2006
A mathematical model for the onset of avascular tumor growth in response to the loss of p53 function

Author(s): Howard A. Levine | Michael W. Smiley | Anna L. Tucker | Marit Nilsen-Hamilton
Volume: 2
Year: 2006
Construction and Clarification of Dynamic Gene Regulatory Network of Cancer Cell Cycle via Microarray Data

Author(s): Cheng-Wei Li | Yung-Hsiang Chu | Bor-Sen Chen
Volume: 2
Year: 2006
Data Perturbation Independent Diagnosis and Validation of Breast Cancer Subtypes Using Clustering and Patterns

Author(s): G. Alexe | G.S. Dalgin | R. Ramaswamy | C. DeLisi | G. Bhanot
Volume: 2
Year: 2006
Integrative Analysis of Gene Expression Data Including an Assessment of Pathway Enrichment for Predicting Prostate Cancer

Author(s): Pingzhao Hu | Celia M.T. Greenwood | Joseph Beyene
Volume: 2
Year: 2006
A Hybrid Approach for Biomarker Discovery from Microarray Gene Expression Data for Cancer Classification

Author(s): Yanxiong Peng | Wenyuan Li | Ying Liu
Volume: 2
Year: 2006
Application of a New Probabilistic Model for Mining Implicit Associated Cancer Genes from OMIM and Medline

Author(s): Shanfeng Zhu | Yasushi Okuno | Gozoh Tsujimoto | Hiroshi Mamitsuka
Volume: 2
Year: 2006
Plasma Protein Profiles Differ Between Women Diagnosed with Cervical Intraepithelial Neoplasia (CIN) 1 and 3

Author(s): Chandrika J. Piyathilake | Denise K. Oelschlager | Sreelatha Meleth | Edward E. Partridge | William E. Grizzle
Volume: 2
Year: 2006
Decentralized Data Sharing of Tissue Microarrays for Investigative Research in Oncology

Author(s): Wenjin Chen | Cristina Schmidt | Manish Parashar | Michael Reiss | David J. Foran
Volume: 2
Year: 2006
Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data

Author(s): Andreu Alibés | Edward R. Morrissey | Andrés Cañada | Oscar M. Rueda | David Casado | Patricio Yankilevich | Ramón Díaz-Uriarte
Volume: 3
Year: 2007
Identifying Biomarkers from Mass Spectrometry Data with Ordinal Outcome

Author(s): Deukwoo Kwon | Mahlet G. Tadesse | Naijun Sha | Ruth M. Pfeiffer | Marina Vannucci
Volume: 3
Year: 2007
Gamma-Normal-Gamma Mixture Model for Detecting Differentially Methylated Loci in Three Breast Cancer Cell Lines

Author(s): Abbas Khalili | Dustin Potter | Pearlly Yan | Lang Li | Joe Gray | Tim Huang | Shili Lin
Volume: 3
Year: 2007
Identification and Characterization of Renal Cell Carcinoma Gene Markers

Author(s): Gul S. Dalgin | Dustin T. Holloway | Louis S. Liou | Charles DeLisi
Volume: 3
Year: 2007
Data Mining for Gene Networks Relevant to Poor Prognosis in Lung Cancer via Backward-Chaining Rule Induction

Author(s): Mary E. Edgerton | Douglas H. Fisher | Lianhong Tang | Lewis J. Frey | Zhihua Chen
Volume: 3
Year: 2007
Comparison of Predicted Probabilities of Proportional Hazards Regression and Linear Discriminant Analysis Methods Using a Colorectal Cancer Molecular Biomarker Database

Author(s): Sreelatha Meleth | Chakrapani Chatla | Venkat R. Katkoori | Billie Anderson | James M. Hardin | Nirag C. Jhala | Al Bartolucci | William E. Grizzle | Upender Manne
Volume: 3
Year: 2007
The Roles of β²-Tubulin Mutations and Isotype Expression in Acquired Drug Resistance

Author(s): J. Torin Huzil | Ke Chen | Lukasz Kurgan | Jack A. Tuszynski
Volume: 3
Year: 2007
Development of Query Strategies to Identify a Histologic Lymphoma Subtype in a Large Linked Database System

Author(s): Michael Graiser | Susan G. Moore | Rochelle Victor | Ashley Hilliard | Leroy Hill | Michael S. Keehan | Christopher R. Flowers
Volume: 3
Year: 2007
A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC)

Author(s): Ashokkumar A. Patel | John R. Gilbertson | Louise C. Showe | Jack W. London | Eric Ross | Michael F. Ochs | Joseph Carver | Andrea Lazarus | Anil V. Parwani | Rajiv Dhir | J. Robert Beck | Michael Liebman | Fernando U. Garcia | Jeff Prichard | Myra Wilkerson | Ronald B. Herberman | Michael J. Becich
Volume: 3
Year: 2007
Simultaneous EGFR and VEGF Alterations in Non-Small Cell Lung Carcinoma Based on Tissue Microarrays

Author(s): Evangelos Tsiambas | Athanasios Stamatelopoulos | Andreas Karameris | Ioannis Panagiotou | Dimitrios Rigopoulos | Antonios Chatzimichalis | Demosthenes Bouros | Efstratios Patsouris
Volume: 3
Year: 2007
Comparison of Supervised Classification Methods for Protein Profiling in Cancer Diagnosis

Author(s): Nadège Dossat | Alain Mangé | Jérôme Solassol | William Jacot | Ludovic Lhermitte | Thierry Maudelonde | Jean-Pierre Daurès | Nicolas Molinari
Volume: 3
Year: 2007
Overlay Tool© for aCGHViewer©: An Analysis Module Built for aCGHViewer© used to Perform Comparisons of Data Derived from Different Microarray Platforms

Author(s): Ken C. Lo | Ganesh Shankar | Yaron Turpaz | Dione Bailey | Michael R. Rossi | Tania Burkhardt | Ping Liang | John K. Cowell
Volume: 3
Year: 2007
Parametric Power Spectral Density Analysis of Noise from Instrumentation in MALDI TOF Mass Spectrometry

Author(s): Hyunjin Shin | Miray Mutlu | John M. Koomen | Mia K. Markey
Volume: 3
Year: 2007
Tumor Genome Wide DNA Alterations Assessed by Array CGH in Patients with Poor and Excellent Survival Following Operation for Colorectal Cancer

Author(s): Kristina K. Lagerstedt | Johan Staaf | Göran Jönsson | Elisabeth Hansson | Christina Lönnroth | Ulf Kressner | Lars Lindström | Svante Nordgren | Åke Borg | Kent Lundholm
Volume: 3
Year: 2007
Combining Clinical and Genomic Covariates via Cov-TGDR

Author(s): Shuangge Ma | Jian Huang
Volume: 3
Year: 2007
Comparison of Computational Algorithms for the Classification of Liver Cancer using SELDI Mass Spectrometry: A Case Study

Author(s): Changyu Shen | Timothy E Breen | Lacey E Dobrolecki | C. Max Schmidt | George W. Sledge | Kathy D. Miller | Robert J Hickey
Volume: 3
Year: 2007
Systems Level Modeling of the Cell Cycle Using Budding Yeast

Author(s): B.P. Ingalls | B.P. Duncker | D.R. Kim | B.J. McConkey
Volume: 3
Year: 2007
Germinal Center B Cell-Like (GCB) and Activated B Cell-Like (ABC) Type of Diffuse Large B Cell Lymphoma (DLBCL): Analysis of Molecular Predictors, Signatures, Cell Cycle State and Patient Survival

Author(s): S. Blenk | J. Engelmann | M. Weniger | J. Schultz | M. Dittrich | A. Rosenwald | H.K. Müller-Hermelink | T. Müller | T. Dandekar
Volume: 3
Year: 2007
Common Peak Approach Using Mass Spectrometry Data Sets for Predicting the Effects of Anticancer Drugs on Breast Cancer

Author(s): Masaru Ushijima | Satoshi Miyata | Shinto Eguchi | Masanori Kawakita | Masataka Yoshimoto | Takuji Iwase | Futoshi Akiyama | Goi Sakamoto | Koichi Nagasaki | Yoshio Miki | Tetsuo Noda | Yutaka Hoshikawa | Masaaki Matsuura
Volume: 3
Year: 2007
A Practical Multifaceted Approach to Selecting Differentially Expressed Genes

Author(s): Yingye Zheng | Margaret Pepe
Volume: 3
Year: 2007
Estimating the False Discovery Rate Using Mixed Normal Distribution for Identifying Differentially Expressed Genes in Microarray Data Analysis

Author(s): Akihiro Hirakawa | Yasunori Sato | Takashi Sozu | Chikuma Hamada | Isao Yoshimura
Volume: 3
Year: 2007
Bayesian Estimation of Performance Measures of Cervical Cancer Screening Tests in the Presence of Covariates and Absence of a Gold Standard

Author(s): Edson Zangiacomi Martinez | Francisco Louzada-Neto | Sophie Françoise Mauricette Derchain | Jorge Alberto Achcar | Renata Clementino Gontijo | Luis Otávio Zanatta Sarian | Kari Juhani Syrjänen
Volume: 6
Year: 2008
Effect of Quantitative Nuclear Image Features on Recurrence of Ductal Carcinoma In Situ (DCIS) of the Breast

Author(s): David E. Axelrod | Naomi A. Miller | H. Lavina Lickley | Jin Qian | William A. Christens-Barry | Yan Yuan | Yuejiao Fu | Judith-Anne W. Chapman
Volume: 6
Year: 2008
A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis

Author(s): Jingping Xie | Philip S. Crooke | Brett A. McKinney | Joel Soltman | Stephen J. Brandt
Volume: 6
Year: 2008
Chromosome 20q Amplification Regulates in Vitro Response to Kinesin-5 Inhibitor

Author(s): Aimee L. Jackson | Mao Mao | Sumire Kobayashi | Teresa Ward | Matthew Biery | Hongyue Dai | Steven R. Bartz | Peter S. Linsley
Volume: 6
Year: 2008
DNA Copy Number Analysis in Gastrointestinal Stromal Tumors Using Gene Expression Microarrays

Author(s): Cristina R. Antonescu | Kai Wu | Guoliang Leon Xing | Manqiu Cao | Yaron Turpaz | Margaret A. Leversha | Earl Hubbell | Robert G. Maki | Garrett Miyada | Raji Pillai
Volume: 6
Year: 2008
Comparisons of Robustness and Sensitivity between Cancer and Normal Cells by Microarray Data

Author(s): Liang-Hui Chu | Bor-Sen Chen
Volume: 6
Year: 2008
MCAM: A Database to Accelerate the Identification of Functional Cell Adhesion Molecules

Author(s): Anguraj Sadanandam | Sudipendra Nath Pal | Joe Ziskovsky | Prathibha Hegde | Rakesh K. Singh
Volume: 6
Year: 2008
Sample Preparation for in vitro Analysis of Iodine in Thyroid Tissue using X-ray Fluorescence

Author(s): Marie Hansson | Mats Isaksson | Gertrud Berg
Volume: 6
Year: 2008
A Standards based Ontological Approach to Information Handling for use by Organizations Providing Human Tissue for Research

Author(s): Mary E. Edgerton | Carl Morrison | Virginia A. LiVolsi | Christopher A. Moskaluk | Stephen J. Qualman | M. Kay Washington | William E. Grizzle
Volume: 6
Year: 2008
Uncovering Biological Network Function via Graphlet Degree Signatures

Author(s): Tijana Milenković | Nataša Pržulj
Volume: 6
Year: 2008
Comparison of a Label-Free Quantitative Proteomic Method Based on Peptide Ion Current Area to the Isotope Coded Affinity Tag Method

Author(s): Soyoung Ryu | Byron Gallis | Young Ah Goo | Scott A. Shaffer | Dragan Radulovic | David R. Goodlett
Volume: 6
Year: 2008
Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios

Author(s): Rachel Karchin | Mukesh Agarwal | Andrej Sali | Fergus Couch | Mary S. Beattie
Volume: 6
Year: 2008
Connections Between ETV6-Modulated Genes: Identification of Shared Features

Author(s): Gino Boily | Patrick Beaulieu | Jasmine Healy | Daniel Sinnett
Volume: 6
Year: 2008
The Need for Review and Understanding of SELDI/MALDI Mass

Author(s): William E. Grizzle | O. John Semmes | William Bigbee | Liu Zhu | Gunjan Malik | Denise K Oelschlager | Barkha Manne | Upender Manne
Volume: 1
Year: 2005
New Advanced Technologies to Provide Decentralised and Secure Access to Medical Records: Case Studies in Oncology

Author(s): Catherine Quantin | Gouenou Coatrieux | François André Allaert | Maniane Fassa | Karima Bourquard | Jean-Yves Boire | Paul de Vlieger | Lydia Maigne | Vincent Breton
Volume: 7
Year: 2009
The Bimodality Index: A Criterion for Discovering and Ranking Bimodal Signatures from Cancer Gene Expression Profiling Data

Author(s): Jing Wang | Sijin Wen | W. Fraser Symmans | Lajos Pusztai | Kevin R. Coombes
Volume: 7
Year: 2009
A Generalized Beta Model for the Age Distribution of Cancers: Application to Pancreatic and Kidney Cancer

Author(s): Tengiz Mdzinarishvili | Michael X. Gleason | Leo Kinarsky | Simon Sherman
Volume: 7
Year: 2009
Robust Model Selection for Classification of Microarrays

Author(s): Ikumi Suzuki | Takashi Takenouchi | Miki Ohira | Shigeyuki Oba | Shin Ishii
Volume: 7
Year: 2009
Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes

Author(s): Spiro P. Pantazatos | Jianrong Li | Paul Pavlidis | Yves A. Lussier
Volume: 8
Year: 2009
Microarray-Based Cancer Prediction Using Soft Computing Approach

Author(s): Xiaosheng Wang | Osamu Gotoh
Volume: 7
Year: 2009
Estrogen Exposure, Metabolism, and Enzyme Variants in a Model for Breast Cancer Risk Prediction

Author(s): Fritz F. Parl | Kathleen M. Egan | Chun Li | Philip S. Crooke
Volume: 7
Year: 2009
Combining Chromosomal Arm Status and Significantly Aberrant Genomic Locations Reveals New Cancer Subtypes

Author(s): Tal Shay | Wanyu L. Lambiv | Anat Reiner-Benaim | Monika E. Heg | Eytan Domany
Volume: 7
Year: 2009
Use of Gene Expression Profiles of Peripheral Blood Lymphocytes to Distinguish BRCA1 Mutation Carriers in High Risk Breast Cancer Families

Author(s): Marie-Laure Vuillaume | Nancy Uhrhammer | Véronique Vidal | Valérie Sylvain Vidal | Valérie Chabaud | Beline Jesson | Fabrice Kwiatkowski | Yves-Jean Bignon
Volume: 7
Year: 2009
Staging of Prostate Cancer Using Automatic Feature Selection, Sampling and Dempster-Shafer Fusion

Author(s): Sandeep Chandana | Henry Leung | Kiril Trpkov
Volume: 7
Year: 2009
Quantitative Assessment of Tissue Biomarkers and Construction of a Model to Predict Outcome in Breast Cancer Using Multiple Imputation

Author(s): John W. Emerson | Marisa Dolled-Filhart | Lyndsay Harris | David L. Rimm | David P. Tuck
Volume: 7
Year: 2009
An Analysis Pipeline for Genome-wide Association Studies

Author(s): Stefan Stefanov | James Lautenberger | Bert Gold
Volume: 6
Year: 2008
Algorithmic Discovery of Methylation “Hot Spots” in DNA from Lymphoma Patients

Author(s): Chris Papageorgio | Robert Harrison | Farahnaz B. Rahmatpanah | Kristen Taylor | Wade Da-vis | Charles W. Caldwell
Volume: 6
Year: 2008
An Algorithm for Identifying Novel Targets of Transcription Factor Families: Application to Hypoxia-inducible Factor 1 Targets

Author(s): Yue Jiang | Bojan Cukic | Donald A. Adjeroh | Heath D. Skinner | Jie Lin | Qingxi J. Shen | Bing-Hua Jiang
Volume: 7
Year: 2009
Multi-marker testing for cancer: what can we learn from modern prenatal testing for Trisomy-21

Author(s): Erasmus Schneider | Gerald Mizejewski
Volume: 2
Year: 2006
Detecting Outlier Microarray Arrays by Correlation and Percentage of Outliers Spots

Author(s): Song Yang | Xiang Guo | Yaw-Ching Yang | Denise Papcunik | Caroline Heckman | Jeffrey Hooke | Craig D. Shriver | Michael N. Liebman | Hai Hu
Volume: 2
Year: 2006
Normalized, Segmented or Called aCGH Data?

Author(s): Wessel N. van Wieringen | Mark A. van de Wiel | Bauke Ylstra
Volume: 3
Year: 2007
Public Databases and Software for the Pathway Analysis of Cancer Genomes

Author(s): Ivy F.L. Tsui | Raj Chari | Timon P.H. Buys | Wan L. Lam
Volume: 3
Year: 2007
Evaluating Microarray-based Classifiers: An Overview

Author(s): A.-L. Boulesteix | C. Strobl | T. Augustin | M. Daumer
Volume: 6
Year: 2008
Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios

Author(s): Junfeng Liu | Weichuan Yu | Baolin Wu | Hongyu Zhao
Volume: 6
Year: 2008
Computational Methods for the Analysis of Array Comparative Genomic Hybridization

Author(s): Raj Chari | William W. Lockwood | Wan L. Lam
Volume: 2
Year: 2006
Databases and QSAR for Cancer Research

Author(s): Adeel Malik | Hemajit Singh | Munazah Andrabi | Syed Akhtar Husain | Shandar Ahmad
Volume: 2
Year: 2006
Challenges in the Analysis of Mass-Throughput Data: A Technical Commentary from the Statistical Machine Learning Perspective

Author(s): Constantin F. Aliferis | Alexander Statnikov | Ioannis Tsamardinos
Volume: 2
Year: 2006
Tumor Growth Rate Approximation-Assisted Estimation

Author(s): Lihua An | S. Ejaz Ahmed | Adnan Ali
Volume: 2
Year: 2006
Heterogeneous Biomedical Database Integration Using a Hybrid Strategy: A p53 Cancer Research Database

Author(s): Vadim Y. Bichutskiy | Richard Colman | Rainer K. Brachmann | Richard H. Lathrop
Volume: 2
Year: 2006
Spatial Turing-type Pattern Formation in a Model of Signal Transduction Involving Membrane-based Receptors Coupled by G Proteins

Author(s): Chontita Rattanakul | Yongwimon Lenbury | Jonathan Bell | Varanuj Chatsudthipong | Wannapong Triampo | Philip S.Crooke
Volume: 2
Year: 2006
Analysis of Gene Expression Data Using BRB-Array Tools

Author(s): Richard Simon | Amy Lam | Ming-Chung Li | Michael Ngan | Supriya Menenzes | Yingdong Zhao
Volume: 3
Year: 2007
CGHregions: Dimension Reduction for Array CGH Data with Minimal Information Loss

Author(s): Mark A. van de Wiel | Wessel N. van Wieringen
Volume: 3
Year: 2007
Feature Selection for Predicting Tumor Metastases in Microarray Experiments using Paired Design

Author(s): Qihua Tan | Mads Thomassen | Torben A. Kruse
Volume: 3
Year: 2007
Global Tumor RNA Expression in Early Establishment of Experimental Tumor Growth and Related Angiogenesis following Cox-Inhibition Evaluated by Microarray Analysis

Author(s): Hans Axelsson | Christina Lönnroth | Marianne Andersson | Wenhua Wang | Kent Lundholm
Volume: 3
Year: 2007
Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study

Author(s): Wenjuan Gu | Hyungwon Choi | Debashis Ghosh
Volume: 6
Year: 2008
Estimating the Proportion of True Null Hypotheses for Multiple Comparisons

Author(s): Hongmei Jiang | R.W. Doerge
Volume: 6
Year: 2008
An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

Author(s): Junghee Han | Dustin Potter | Tahsin Kurc | Greg Singer | Pearlly S. Yan | Sun Hao | Shannon Hastings | Stephen Langella | Scott Oster | Ramana V. Davuluri | Tim H.-M. Huang | Joel H. Saltz
Volume: 6
Year: 2008
Assessing the Statistical Significance of the Achieved Classification Error of Classifiers Constructed using Serum Peptide Profiles, and a Prescription for Random Sampling Repeated Studies for Massive High-Throughput Genomic and Proteomic Studies

Author(s): James Lyons-Weiler | Richard Pelikan | Herbert J Zeh III | David C Whitcomb | David E Malehorn | William L Bigbee | Milos Hauskrecht
Volume: 1
Year: 2005
Impact of Freeze-thaw Cycles and Storage Time on Plasma Samples Used in Mass Spectrometry Based Biomarker Discovery Projects

Author(s): Breeana L Mitchell | Yutaka Yasui | Christopher I Li | Annette L. Fitzpatrick | Paul D Lampe
Volume: 1
Year: 2005
Characterising phase variations in MALDI-TOF data and correcting

Author(s): Simon M Lin | Richard P Haney | Michael J Campa | Michael C Fitzgerald | Edward F Patz, Jr
Volume: 1
Year: 2005
Proteomics: Analysis of Spectral Data

Author(s): Harry B Burke
Volume: 1
Year: 2005
Design of Early Validation Trials of Biomarkers

Author(s): Daniel Normollea, Mack T. Ruffin IVb and Dean Brennerc
Volume: 1
Year: 2005
Bias, Randomization, and Ovarian Proteomic Data: A Reply to

Author(s): Keith A. Baggerly, Kevin R. Coombes, and Jeffrey S. Morris
Volume: 1
Year: 2005
Understanding the characteristics of mass spectrometry data through the use of simulation

Author(s): Kevin R. Coombes | John M. Koomen | Keith A. Baggerly | Jeffrey S. Morris | Ryuji Kobayashi
Volume: 1
Year: 2005
Novel approaches to smoothing and comparing SELDI TOF spectra

Author(s): Sreelatha Meleth | Isam-Eldin Eltoum | Liu Zhu | Denise Oelschlager | Chandrika Piyathilake | David Chieng | William E. Grizzle
Volume: 1
Year: 2005
Linguistic Processing and Classification of Semi Structured Bibliographic Data on Complementary Medicine

Author(s): Thomas Ostermann | Christa K. Raak | Peter F. Matthiessen | Arndt Büssing | Hartmut Zillmann
Volume: 7
Year: 2009
Applications of Microarray Technology to Acute Myelogenous Leukemia

Author(s): Rashmi S. Goswami | Mahadeo A. Sukhai | Mariam Thomas | Patricia P. Reis | Suzanne Kamel-Reid
Volume: 7
Year: 2009
Simulation of Different Truncated p16INK4a Forms and In Silico Study of Interaction with Cdk4

Author(s): Najmeh Fahham | Mohammad Hossein Ghahremani | Soroush Sardari | Behrouz Vaziri | Seyed Nasser Ostad
Volume: 7
Year: 2009
What Does PLIER Really Do?

Author(s): Terry M.Therneau | Karla V.Ballman
Volume: 6
Year: 2008
Dedication: Sarah Amy Hill

Volume: 1
Year: 2005
Spotlight on Cancer Informatics: Constantin Alifieris, M.D., Ph.D.

Author(s): Constantin Alifieris
Volume: 2
Year: 2006
Cancer Informatics Vision: caBIG

Author(s): Andrew C. von Eschenbach | Kenneth Buetow
Volume: 2
Year: 2006
Spotlight on Cancer Informatics: Georgios S Stamatakos, PhD

Author(s): Georgios S Stamatakos
Volume: 2
Year: 2006
Cancer Informatics in the U.K.: The NCRI Informatics Initiative

Author(s): Fiona Reddington | J. Max Wilkinson | Robin Clark | Helen Parkinson | Peter Kerr | Richard Begent
Volume: 2
Year: 2006
Dedication: Chiara Silvestrini

Author(s): Mary E. Edgerton
Volume: 3
Year: 2007
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