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BMC Evolutionary Biology

ISSN: 1471--2148
Publisher: BioMed Central


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Stress and fitness in parthenogens: is dormancy a key feature for bdelloid rotifers? PDF available

Author(s): Ricci Claudia | Caprioli Manuela | Fontaneto Diego
Volume: 7
Issue: Suppl 2
Year: 2007
Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea PDF available

Author(s): Carapelli Antonio | Liò Pietro | Nardi Francesco | van der Wath Elizabeth | Frati Francesco
Volume: 7
Issue: Suppl 2
Year: 2007
Unexpected presence of Fagus orientalis complex in Italy as inferred from 45,000-year-old DNA pollen samples from Venice lagoon PDF available

Author(s): Paffetti Donatella | Vettori Cristina | Caramelli David | Vernesi Cristiano | Lari Martina | Paganelli Arturo | Paule Ladislav | Giannini Raffaello
Volume: 7
Issue: Suppl 2
Year: 2007
The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case PDF available

Author(s): Fani Renato | Brilli Matteo | Fondi Marco | Lió Pietro
Volume: 7
Issue: Suppl 2
Year: 2007
The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis PDF available

Author(s): Fondi Marco | Brilli Matteo | Emiliani Giovanni | Paffetti Donatella | Fani Renato
Volume: 7
Issue: Suppl 2
Year: 2007
Montmorillonite protection of an UV-irradiated hairpin ribozyme: evolution of the RNA world in a mineral environment PDF available

Author(s): Biondi Elisa | Branciamore Sergio | Maurel Marie-Christine | Gallori Enzo
Volume: 7
Issue: Suppl 2
Year: 2007
Fantastic animals as an experimental model to teach animal adaptation PDF available

Author(s): Guidetti Roberto | Baraldi Laura | Calzolai Caterina | Pini Lorenza | Veronesi Paola | Pederzoli Aurora
Volume: 7
Issue: Suppl 2
Year: 2007
Genetic variation in Northern Thailand Hill Tribes: origins and relationships with social structure and linguistic differences PDF available

Author(s): Besaggio Davide | Fuselli Silvia | Srikummool Metawee | Kampuansai Jatupol | Castrì Loredana | Tyler-Smith Chris | Seielstad Mark | Kangwanpong Daoroong | Bertorelle Giorgio
Volume: 7
Issue: Suppl 2
Year: 2007
Phylogenomics of species from four genera of New World monkeys by flow sorting and reciprocal chromosome painting PDF available

Author(s): Dumas Francesca | Stanyon Roscoe | Sineo Luca | Stone Gary | Bigoni Francesca
Volume: 7
Issue: Suppl 2
Year: 2007
Fitness variation in response to artificial selection for reduced cell area, cell number and wing area in natural populations of Drosophila melanogaster PDF available

Author(s): Trotta Vincenzo | Calboli Federico | Ziosi Marcello | Cavicchi Sandro
Volume: 7
Issue: Suppl 2
Year: 2007
Formamide as the main building block in the origin of nucleic acids PDF available

Author(s): Costanzo Giovanna | Saladino Raffaele | Crestini Claudia | Ciciriello Fabiana | Di Mauro Ernesto
Volume: 7
Issue: Suppl 2
Year: 2007
Modeling HIV quasispecies evolutionary dynamics PDF available

Author(s): Sguanci Luca | Bagnoli Franco | Liò Pietro
Volume: 7
Issue: Suppl 2
Year: 2007
Detecting non-coding selective pressure in coding regions

Author(s): Chen Hui | Blanchette Mathieu
Volume: 7
Issue: Suppl 1
Year: 2007
The role of laterally transferred genes in adaptive evolution

Author(s): Marri Pradeep | Hao Weilong | Golding G Brian
Volume: 7
Issue: Suppl 1
Year: 2007
Phylogenetic signal and functional categories in Proteobacteria genomes

Author(s): Comas Iñaki | Moya Andrés | González-Candelas Fernando
Volume: 7
Issue: Suppl 1
Year: 2007
Rapid divergence of codon usage patterns within the rice genome

Author(s): Wang Huai-Chun | Hickey Donal
Volume: 7
Issue: Suppl 1
Year: 2007
Methods for selecting fixed-effect models for heterogeneous codon evolution, with comments on their application to gene and genome data

Author(s): Bao Le | Gu Hong | Dunn Katherine | Bielawski Joseph
Volume: 7
Issue: Suppl 1
Year: 2007
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

Author(s): Lartillot Nicolas | Brinkmann Henner | Philippe Hervé
Volume: 7
Issue: Suppl 1
Year: 2007
Inferring angiosperm phylogeny from EST data with widespread gene duplication

Author(s): Sanderson Michael | McMahon Michelle
Volume: 7
Issue: Suppl 1
Year: 2007
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics

Author(s): Roure Béatrice | Rodriguez-Ezpeleta Naiara | Philippe Hervé
Volume: 7
Issue: Suppl 1
Year: 2007
Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes

Author(s): Pagel Mark | Meade Andrew | Scott Daniel
Volume: 7
Issue: Suppl 1
Year: 2007
Evolution of motif variants and positional bias of the cyclic-AMP response element

Author(s): Smith Brandon | Fang Hung | Pan Youlian | Walker P Roy | Famili A Fazel | Sikorska Marianna
Volume: 7
Issue: Suppl 1
Year: 2007
Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human

Author(s): Zhang Zhaolei | Pang Andy | Gerstein Mark
Volume: 7
Issue: Suppl 1
Year: 2007
RNase MRP and the RNA processing cascade in the eukaryotic ancestor

Author(s): Woodhams Michael | Stadler Peter | Penny David | Collins Lesley
Volume: 7
Issue: Suppl 1
Year: 2007
FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function

Author(s): Krishnamurthy Nandini | Brown Duncan | Sjölander Kimmen
Volume: 7
Issue: Suppl 1
Year: 2007
Identifying dramatic selection shifts in phylogenetic trees

Author(s): Dorman Karin
Volume: 7
Issue: Suppl 1
Year: 2007
Overview of the First Phylogenomics Conference

Author(s): Philippe Hervé | Blanchette Mathieu
Volume: 7
Issue: Suppl 1
Year: 2007
Lineage diversification and historical demography of a montane bird Garrulax elliotii - implications for the Pleistocene evolutionary history of the eastern Himalayas

Author(s): Qu Yanhua | Luo Xu | Zhang Ruiying | Song Gang | Zou Fasheng | Lei Fumin
Volume: 11
Issue: 1
Year: 2011
Shifting patterns of natural variation in the nuclear genome of caenorhabditis elegans

Author(s): Solorzano Eleanne | Okamoto Kazufusa | Datla Pushpa | Sung Way | Bergeron RD | Thomas WK
Volume: 11
Issue: 1
Year: 2011
On species delimitation: Yet another lemur species or just genetic variation?

Author(s): Markolf Matthias | Brameier Markus | Kappeler Peter
Volume: 11
Issue: 1
Year: 2011
Differences in lateral gene transfer in hypersaline versus thermal environments

Author(s): Rhodes Matthew | Spear John | Oren Aharon | House Christopher
Volume: 11
Issue: 1
Year: 2011
Evolutionary factors affecting Lactate dehydrogenase A and B variation in the Daphnia pulex species complex

Author(s): Crease Teresa | Floyd Robin | Cristescu Melania | Innes David
Volume: 11
Issue: 1
Year: 2011
Predictors for reproductive isolation in a ring species complex following genetic and ecological divergence

Author(s): Pereira Ricardo | Monahan William | Wake David
Volume: 11
Issue: 1
Year: 2011
"Nested" cryptic diversity in a widespread marine ecosystem engineer: a challenge for detecting biological invasions

Author(s): Teske Peter | Rius Marc | McQuaid Christopher | Styan Craig | Piggott Maxine | Benhissoune Saïd | Fuentes-Grünewald Claudio | Walls Kathy | Page Mike | Attard Catherine | Cooke Georgina | McClusky Claire | Banks Sam | Barker Nigel | Beheregaray Luciano
Volume: 11
Issue: 1
Year: 2011
Genome-wide evidence for positive selection and recombination in Actinobacillus pleuropneumoniae

Author(s): Xu Zhuofei | Chen Huanchun | Zhou Rui
Volume: 11
Issue: 1
Year: 2011
The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella

Author(s): Audic Stéphane | Lescot Magali | Claverie Jean-Michel | Cloeckaert Axel | Zygmunt Michel
Volume: 11
Issue: 1
Year: 2011
Phylogenomic analyses of malaria parasites and evolution of their exported proteins

Author(s): Pick Christian | Ebersberger Ingo | Spielmann Tobias | Bruchhaus Iris | Burmester Thorsten
Volume: 11
Issue: 1
Year: 2011
Exploring the selective constraint on the sizes of insertions and deletions in 5' untranslated regions in mammals

Author(s): Chen Chun-Hsi | Liao Ben-Yang | Chen Feng-Chi
Volume: 11
Issue: 1
Year: 2011
Genetic differentiation between cave and surface-dwelling populations of Garra barreimiae (Cyprinidae) in Oman

Author(s): Kruckenhauser Luise | Haring Elisabeth | Seemann Robert | Sattmann Helmut
Volume: 11
Issue: 1
Year: 2011
Introgression and rapid species turnover in sympatric damselflies

Author(s): Sánchez-Guillén Rosa | Wellenreuther Maren | Cordero-Rivera Adolfo | Hansson Bengt
Volume: 11
Issue: 1
Year: 2011
Spatial distribution and male mating success of Anopheles gambiae swarms

Author(s): Diabaté Abdoulaye | Yaro Alpha | Dao Adama | Diallo Moussa | Huestis Diana | Lehmann Tovi
Volume: 11
Issue: 1
Year: 2011
Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion

Author(s): Ugelvig Line | Nielsen Per | Boomsma Jacobus | Nash David
Volume: 11
Issue: 1
Year: 2011
One-shot genitalia are not an evolutionary dead end - Regained male polygamy in a sperm limited spider species

Author(s): Schneider Jutta | Michalik Peter
Volume: 11
Issue: 1
Year: 2011
Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle

Author(s): Gaither Michelle | Bowen Brian | Bordenave Tiana-Rae | Rocha Luiz | Newman Stephen | Gomez Juan | van Herwerden Lynne | Craig Matthew
Volume: 11
Issue: 1
Year: 2011
Increased gene sampling strengthens support for higher-level groups within leaf-mining moths and relatives (Lepidoptera: Gracillariidae)

Author(s): Kawahara Akito | Ohshima Issei | Kawakita Atsushi | Regier Jerome | Mitter Charles | Cummings Michael | Davis Donald | Wagner David | De Prins Jurate | Lopez-Vaamonde Carlos
Volume: 11
Issue: 1
Year: 2011
Phylogeny and evolution of life-history strategies in the Sycophaginae non-pollinating fig wasps (Hymenoptera, Chalcidoidea)

Author(s): Cruaud Astrid | Jabbour-Zahab Roula | Genson Gwenaëlle | Kjellberg Finn | Kobmoo Noppol | van Noort Simon | Da-Rong Yang | Yan-Qiong Peng | Ubaidillah Rosichon | Hanson Paul | Santos-Mattos Otilene | Farache Fernando | Pereira Rodrigo | Kerdelhué Carole | Rasplus Jean-Yves
Volume: 11
Issue: 1
Year: 2011
Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

Author(s): Escobar Juan | Scornavacca Céline | Cenci Alberto | Guilhaumon Claire | Santoni Sylvain | Douzery Emmanuel | Ranwez Vincent | Glémin Sylvain | David Jacques
Volume: 11
Issue: 1
Year: 2011
From Antarctica or Asia? New colonization scenario for Australian-New Guinean narrow mouth toads suggested from the findings on a mysterious genus Gastrophrynoides

Author(s): Kurabayashi Atsushi | Matsui Masafumi | Belabut Daicus | Yong Hoi-Sen | Ahmad Norhayati | Sudin Ahmad | Kuramoto Mitsuru | Hamidy Amir | Sumida Masayuki
Volume: 11
Issue: 1
Year: 2011
Natural selection among Eurasians at genomic regions associated with HIV-1 control

Author(s): Klimentidis Yann | Aissani Brahim | Shriver Mark | Allison David | Shrestha Sadeep
Volume: 11
Issue: 1
Year: 2011
The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages

Author(s): Zhong Ying-fu | Holland Peter
Volume: 11
Issue: 1
Year: 2011
Evolution of the mammalian lysozyme gene family

Author(s): Irwin David | Biegel Jason | Stewart Caro-Beth
Volume: 11
Issue: 1
Year: 2011
The evolutionary history of the catenin gene family during metazoan evolution

Author(s): Zhao Zi-Ming | Reynolds Albert | Gaucher Eric
Volume: 11
Issue: 1
Year: 2011
Reconstructing genetic mating systems in the absence of parental information in colonially breeding waterbirds

Author(s): Miño Carolina | Russello Michael | Mussi Gonçalves Priscila | Del Lama Silvia
Volume: 11
Issue: 1
Year: 2011
Immunoglobulin heavy chains in medaka (Oryzias latipes)

Author(s): Magadán-Mompó Susana | Sánchez-Espinel Christian | Gambón-Deza Francisco
Volume: 11
Issue: 1
Year: 2011
Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits

Author(s): Larsson John | Nylander Johan | Bergman Birgitta
Volume: 11
Issue: 1
Year: 2011
Cross-species chromosome painting tracks the independent origin of multiple sex chromosomes in two cofamiliar Erythrinidae fishes

Author(s): Cioffi Marcelo | Sánchez Antonio | Marchal Juan | Kosyakova Nadezda | Liehr Thomas | Trifonov Vladimir | Bertollo Luiz
Volume: 11
Issue: 1
Year: 2011
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

Author(s): Nakatani Masanori | Miya Masaki | Mabuchi Kohji | Saitoh Kenji | Nishida Mutsumi
Volume: 11
Issue: 1
Year: 2011
Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolving

Author(s): Cagliani Rachele | Riva Stefania | Pozzoli Uberto | Fumagalli Matteo | Comi Giacomo | Bresolin Nereo | Clerici Mario | Sironi Manuela
Volume: 11
Issue: 1
Year: 2011
Mutator dynamics in sexual and asexual experimental populations of yeast

Author(s): Raynes Yevgeniy | Gazzara Matthew | Sniegowski Paul
Volume: 11
Issue: 1
Year: 2011
Complex evolutionary history of the Mexican stoneroller Campostoma ornatum Girard, 1856 (Actinopterygii: Cyprinidae)

Author(s): Domínguez-Domínguez Omar | Vila Marta | Pérez-Rodríguez Rodolfo | Remón Nuria | Doadrio Ignacio
Volume: 11
Issue: 1
Year: 2011
Does thermoregulatory behavior maximize reproductive fitness of natural isolates of Caenorhabditis elegans?

Author(s): Anderson Jennifer | Albergotti Lori | Ellebracht Barbara | Huey Raymond | Phillips Patrick
Volume: 11
Issue: 1
Year: 2011
Phylogeographic divergence in the widespread delicate skink (Lampropholis delicata) corresponds to dry habitat barriers in eastern Australia

Author(s): Chapple David | Hoskin Conrad | Chapple Stephanie | Thompson Michael
Volume: 11
Issue: 1
Year: 2011
Predator-induced changes of female mating preferences: innate and experiential effects

Author(s): Bierbach David | Schulte Matthias | Herrmann Nina | Tobler Michael | Stadler Stefan | Jung Christian | Kunkel Benjamin | Riesch Rüdiger | Klaus Sebastian | Ziege Madlen | Indy Jeane | Arias-Rodriguez Lenin | Plath Martin
Volume: 11
Issue: 1
Year: 2011
Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones

Author(s): Miraldo Andreia | Hewitt Godfrey | Paulo Octavio | Emerson Brent
Volume: 11
Issue: 1
Year: 2011
Synchronization of cytoplasmic and transferred mitochondrial ribosomal protein gene expression in land plants is linked to Telo-box motif enrichment

Author(s): Wang Jie | Wang Yu | Wang Zhuo | Liu Lei | Zhu Xin-Guang | Ma Xiaotu
Volume: 11
Issue: 1
Year: 2011
Testis-specific glyceraldehyde-3-phosphate dehydrogenase: origin and evolution

Author(s): Kuravsky Mikhail | Aleshin Vladimir | Frishman Dmitrij | Muronetz Vladimir
Volume: 11
Issue: 1
Year: 2011
Scaling properties of protein family phylogenies

Author(s): Herrada Alejandro | Eguíluz Víctor | Hernández-García Emilio | Duarte Carlos
Volume: 11
Issue: 1
Year: 2011
Experimental mutation-accumulation on the X chromosome of Drosophila melanogaster reveals stronger selection on males than females

Author(s): Mallet Martin | Bouchard Jessica | Kimber Christopher | Chippindale Adam
Volume: 11
Issue: 1
Year: 2011
Evolutionary patterns and processes in the radiation of phyllostomid bats

Author(s): Monteiro Leandro | Nogueira Marcelo
Volume: 11
Issue: 1
Year: 2011
Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae)

Author(s): Alejandrino Alvin | Puslednik Louise | Serb Jeanne
Volume: 11
Issue: 1
Year: 2011
The evolutionary history of the SAL1 gene family in eutherian mammals

Author(s): Meslin Camille | Brimau Fanny | Meillour Patricia | Callebaut Isabelle | Pascal Géraldine | Monget Philippe
Volume: 11
Issue: 1
Year: 2011
Evolution of endogenous retroviruses in the Suidae: evidence for different viral subpopulations in African and Eurasian host species

Author(s): Nascimento Fabrícia | Gongora Jaime | Charleston Michael | Tristem Michael | Lowden Stewart | Moran Chris
Volume: 11
Issue: 1
Year: 2011
The evolution of reproductive isolation in a simultaneous hermaphrodite, the freshwater snail Physa

Author(s): Dillon Robert | Wethington Amy | Lydeard Charles
Volume: 11
Issue: 1
Year: 2011
Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs

Author(s): Liu Zhongyang | Liu Qijun | Sun Hanchang | Hou Lin | Guo Hao | Zhu Yunping | Li Dong | He Fuchu
Volume: 11
Issue: 1
Year: 2011
Phylogeny and androgenesis in the invasive Corbicula clams (Bivalvia, Corbiculidae) in Western Europe

Author(s): Pigneur Lise-Marie | Marescaux Jonathan | Roland Kathleen | Etoundi Emilie | Descy Jean-Pierre | Van Doninck Karine
Volume: 11
Issue: 1
Year: 2011
Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes

Author(s): Baele Guy | Van de Peer Yves | Vansteelandt Stijn
Volume: 11
Issue: 1
Year: 2011
Molecular evolution of the vertebrate TLR1 gene family - a complex history of gene duplication, gene conversion, positive selection and co-evolution

Author(s): Huang Yinhua | Temperley Nicholas | Ren Liming | Smith Jacqueline | Li Ning | Burt David
Volume: 11
Issue: 1
Year: 2011
The two tryptophans of β2-microglobulin have distinct roles in function and folding and might represent two independent responses to evolutionary pressure

Author(s): Raimondi Sara | Barbarini Nicola | Mangione Palma | Esposito Gennaro | Ricagno Stefano | Bolognesi Martino | Zorzoli Irene | Marchese Loredana | Soria Cristina | Bellazzi Riccardo | Monti Maria | Stoppini Monica | Stefanelli Mario | Magni Paolo | Bellotti Vittorio
Volume: 11
Issue: 1
Year: 2011
PhyDesign: an online application for profiling phylogenetic informativeness

Author(s): López-Giráldez Francesc | Townsend Jeffrey
Volume: 11
Issue: 1
Year: 2011
Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast

Author(s): Swamy Krishna | Chu Wen-Yi | Wang Chun-Yi | Tsai Huai-Kuang | Wang Daryi
Volume: 11
Issue: 1
Year: 2011
The 5S rDNA family evolves through concerted and birth-and-death evolution in fish genomes: an example from freshwater stingrays

Author(s): Pinhal Danillo | Yoshimura Tatiana | Araki Carlos | Martins Cesar
Volume: 11
Issue: 1
Year: 2011
Homoplastic microinversions and the avian tree of life

Author(s): Braun Edward | Kimball Rebecca | Han Kin-Lan | Iuhasz-Velez Naomi | Bonilla Amber | Chojnowski Jena | Smith Jordan | Bowie Rauri | Braun Michael | Hackett Shannon | Harshman John | Huddleston Christopher | Marks Ben | Miglia Kathleen | Moore William | Reddy Sushma | Sheldon Frederick | Witt Christopher | Yuri Tamaki
Volume: 11
Issue: 1
Year: 2011
The proteomic complexity and rise of the primordial ancestor of diversified life

Author(s): Kim Kyung | Caetano-Anollés Gustavo
Volume: 11
Issue: 1
Year: 2011
On the genome constitution and evolution of intermediate wheatgrass (Thinopyrum intermedium: Poaceae, Triticeae)

Author(s): Mahelka Václav | Kopecký David | Paštová Ladislava
Volume: 11
Issue: 1
Year: 2011
Ecological character displacement in the face of gene flow: Evidence from two species of nightingales

Author(s): Reifová Radka | Reif Jiří | Antczak Marcin | Nachman Michael
Volume: 11
Issue: 1
Year: 2011
The enigmatic mitochondrial genome of Rhabdopleura compacta (Pterobranchia) reveals insights into selection of an efficient tRNA system and supports monophyly of Ambulacraria

Author(s): Perseke Marleen | Hetmank Joerg | Bernt Matthias | Stadler Peter | Schlegel Martin | Bernhard Detlef
Volume: 11
Issue: 1
Year: 2011
The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella

Author(s): Alverson Andrew | Beszteri Bánk | Julius Matthew | Theriot Edward
Volume: 11
Issue: 1
Year: 2011
BEL/Pao retrotransposons in metazoan genomes

Author(s): de la Chaux Nicole | Wagner Andreas
Volume: 11
Issue: 1
Year: 2011
Reduced MHC and neutral variation in the Galápagos hawk, an island endemic

Author(s): Bollmer Jennifer | Hull Joshua | Ernest Holly | Sarasola José | Parker Patricia
Volume: 11
Issue: 1
Year: 2011
The evolution of plasmid-carried antibiotic resistance

Author(s): Svara Fabian | Rankin Daniel
Volume: 11
Issue: 1
Year: 2011
Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways

Author(s): Li Yang | Li Chaoqun | Ding Guohui | Jin Youxin
Volume: 11
Issue: 1
Year: 2011
Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes

Author(s): O'Quin Kelly | Smith Daniel | Naseer Zan | Schulte Jane | Engel Samuel | Loh Yong-Hwee | Streelman J Todd | Boore Jeffrey | Carleton Karen
Volume: 11
Issue: 1
Year: 2011
A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea

Author(s): Geisler Jonathan | McGowen Michael | Yang Guang | Gatesy John
Volume: 11
Issue: 1
Year: 2011
Unprecedented within-species chromosome number cline in the Wood White butterfly Leptidea sinapis and its significance for karyotype evolution and speciation

Author(s): Lukhtanov Vladimir | Dincă Vlad | Talavera Gerard | Vila Roger
Volume: 11
Issue: 1
Year: 2011
Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins

Author(s): Ainali Chrysanthi | Simon Michelle | Freilich Shiri | Espinosa Octavio | Hazelwood Lee | Tsoka Sophia | Ouzounis Christos | Hancock John
Volume: 11
Issue: 1
Year: 2011
The role of historical and contemporary processes on phylogeographic structure and genetic diversity in the Northern Cardinal, Cardinalis cardinalis

Author(s): Smith Brian | Escalante Patricia | Hernández Baños Blanca | Navarro-Sigüenza Adolfo | Rohwer Sievert | Klicka John
Volume: 11
Issue: 1
Year: 2011
The evolutionary history of the stearoyl-CoA desaturase gene family in vertebrates

Author(s): Castro L Filipe | Wilson Jonathan | Gonçalves Odete | Galante-Oliveira Susana | Rocha Eduardo | Cunha Isabel
Volume: 11
Issue: 1
Year: 2011
The mode and tempo of hepatitis C virus evolution within and among hosts

Author(s): Gray Rebecca | Parker Joe | Lemey Philippe | Salemi Marco | Katzourakis Aris | Pybus Oliver
Volume: 11
Issue: 1
Year: 2011
The impact of distance and a shifting temperature gradient on genetic connectivity across a heterogeneous landscape

Author(s): Rossetto Maurizio | Thurlby Katie | Offord Catherine | Allen Chris | Weston Peter
Volume: 11
Issue: 1
Year: 2011
Are ribosomal DNA clusters rearrangement hotspots? A case study in the genus Mus (Rodentia, Muridae)

Author(s): Cazaux Benoîte | Catalan Josette | Veyrunes Frédéric | Douzery Emmanuel | Britton-Davidian Janice
Volume: 11
Issue: 1
Year: 2011
Parallel evolution controlled by adaptation and covariation in ammonoid cephalopods

Author(s): Monnet Claude | De Baets Kenneth | Klug Christian
Volume: 11
Issue: 1
Year: 2011
Altered gene expression and ecological divergence in sibling allopolyploids of Dactylorhiza (Orchidaceae)

Author(s): Paun Ovidiu | Bateman Richard | Fay Michael | Luna Javier | Moat Justin | Hedrén Mikael | Chase Mark
Volume: 11
Issue: 1
Year: 2011
Reversal to air-driven sound production revealed by a molecular phylogeny of tongueless frogs, family Pipidae

Author(s): Irisarri Iker | Vences Miguel | San Mauro Diego | Glaw Frank | Zardoya Rafael
Volume: 11
Issue: 1
Year: 2011
Functional specialization in nucleotide sugar transporters occurred through differentiation of the gene cluster EamA (DUF6) before the radiation of Viridiplantae

Author(s): Västermark Åke | Almén Markus | Simmen Martin | Fredriksson Robert | Schiöth Helgi
Volume: 11
Issue: 1
Year: 2011
Algal MIPs, high diversity and conserved motifs

Author(s): Anderberg Hanna | Danielson Jonas | Johanson Urban
Volume: 11
Issue: 1
Year: 2011
Natural history of SLC11 genes in vertebrates: tales from the fish world

Author(s): Neves João | Wilson Jonathan | Kuhl Heiner | Reinhardt Richard | Castro L Filipe | Rodrigues Pedro
Volume: 11
Issue: 1
Year: 2011
The sequence, structure and evolutionary features of HOTAIR in mammals

Author(s): He Sha | Liu Shiping | Zhu Hao
Volume: 11
Issue: 1
Year: 2011
Adaptive phenotypic plasticity in the Midas cichlid fish pharyngeal jaw and its relevance in adaptive radiation

Author(s): Muschick Moritz | Barluenga Marta | Salzburger Walter | Meyer Axel
Volume: 11
Issue: 1
Year: 2011
Terrestrial invasion of pomatiopsid gastropods in the heavy-snow region of the Japanese Archipelago

Author(s): Kameda Yuichi | Kato Makoto
Volume: 11
Issue: 1
Year: 2011
A multi gene sequence-based phylogeny of the Musaceae (banana) family

Author(s): Christelová Pavla | Valárik Miroslav | Hřibová Eva | De Langhe Edmond | Doležel Jaroslav
Volume: 11
Issue: 1
Year: 2011
Support for the reproductive ground plan hypothesis of social evolution and major QTL for ovary traits of Africanized worker honey bees (Apis mellifera L.)

Author(s): Graham Allie | Munday Michael | Kaftanoglu Osman | Page Robert | Amdam Gro | Rueppell Olav
Volume: 11
Issue: 1
Year: 2011
Phylogeny and adaptive evolution of the brain-development gene microcephalin (MCPH1) in cetaceans

Author(s): McGowen Michael | Montgomery Stephen | Clark Clay | Gatesy John
Volume: 11
Issue: 1
Year: 2011
Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids

Author(s): Maruyama Shinichiro | Suzaki Toshinobu | Weber Andreas | Archibald John | Nozaki Hisayoshi
Volume: 11
Issue: 1
Year: 2011
Genetic diversity and demographic instability in Riftia pachyptila tubeworms from eastern Pacific hydrothermal vents

Author(s): Coykendall D Katharine | Johnson Shannon | Karl Stephen | Lutz Richard | Vrijenhoek Robert
Volume: 11
Issue: 1
Year: 2011
Phylogeography of a successful aerial disperser: the golden orb spider Nephila on Indian Ocean islands

Author(s): Kuntner Matjaž | Agnarsson Ingi
Volume: 11
Issue: 1
Year: 2011
Osvaldo and Isis retrotransposons as markers of the Drosophila buzzatii colonisation in Australia

Author(s): García Guerreiro María | Fontdevila Antonio
Volume: 11
Issue: 1
Year: 2011
Sex− and species−biased gene flow in a spotted eagle hybrid zone

Author(s): Backström Niclas | Väli Ülo
Volume: 11
Issue: 1
Year: 2011
Genetic population structure of the alpine species Rhododendron pseudochrysanthum sensu lato (Ericaceae) inferred from chloroplast and nuclear DNA

Author(s): Huang Chi-Chun | Hung Kuo-Hsiang | Hwang Chi-Chuan | Huang Jao-Ching | Lin Hung-Du | Wang Wei-Kuang | Wu Pei-Yin | Hsu Tsai-Wen | Chiang Tzen-Yuh
Volume: 11
Issue: 1
Year: 2011
Heritable determinants of male fertilization success in the nematode Caenorhabditis elegans

Author(s): Murray Rosalind | Kozlowska Joanna | Cutter Asher
Volume: 11
Issue: 1
Year: 2011
Evolution of light-harvesting complex proteins from Chl c-containing algae

Author(s): Hoffman Gabriel | Puerta M Virginia | Delwiche Charles
Volume: 11
Issue: 1
Year: 2011
Arm-specific dynamics of chromosome evolution in malaria mosquitoes

Author(s): Sharakhova Maria | Xia Ai | Leman Scotland | Sharakhov Igor
Volume: 11
Issue: 1
Year: 2011
Population density and group size effects on reproductive behavior in a simultaneous hermaphrodite

Author(s): Sprenger Dennis | Lange Rolanda | Anthes Nils
Volume: 11
Issue: 1
Year: 2011
Origin of land plants: Do conjugating green algae hold the key?

Author(s): Wodniok Sabina | Brinkmann Henner | Glöckner Gernot | Heidel Andrew | Philippe Hervé | Melkonian Michael | Becker Burkhard
Volume: 11
Issue: 1
Year: 2011
On the phylogeny of Mustelidae subfamilies: analysis of seventeen nuclear non-coding loci and mitochondrial complete genomes

Author(s): Yu Li | Peng Dan | Liu Jiang | Luan Pengtao | Liang Lu | Lee Hang | Lee Muyeong | Ryder Oliver | Zhang Yaping
Volume: 11
Issue: 1
Year: 2011
Genome size evolution at the speciation level: The cryptic species complex Brachionus plicatilis (Rotifera)

Author(s): Stelzer Claus-Peter | Riss Simone | Stadler Peter
Volume: 11
Issue: 1
Year: 2011
Correction: Spore development and nuclear inheritance in arbuscular mycorrhizal fungi

Author(s): Marleau Julie | Dalpé Yolande | St-Arnaud Marc | Hijri Mohamed
Volume: 11
Issue: 1
Year: 2011
Annelid Distal-less/Dlx duplications reveal varied post-duplication fates

Author(s): McDougall Carmel | Korchagina Natalia | Tobin Jonathan | Ferrier David
Volume: 11
Issue: 1
Year: 2011
Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula

Author(s): De Mita Stéphane | Chantret Nathalie | Loridon Karine | Ronfort Joëlle | Bataillon Thomas
Volume: 11
Issue: 1
Year: 2011
Strength and tempo of selection revealed in viral gene genealogies

Author(s): Bedford Trevor | Cobey Sarah | Pascual Mercedes
Volume: 11
Issue: 1
Year: 2011
Early evolution of the biotin-dependent carboxylase family

Author(s): Lombard Jonathan | Moreira David
Volume: 11
Issue: 1
Year: 2011
Evolutionary history of Serpulaceae (Basidiomycota): molecular phylogeny, historical biogeography and evidence for a single transition of nutritional mode

Author(s): Skrede Inger | Engh Ingeborg | Binder Manfred | Carlsen Tor | Kauserud Håvard | Bendiksby Mika
Volume: 11
Issue: 1
Year: 2011
Speciation in little: the role of range and body size in the diversification of Malagasy mantellid frogs

Author(s): Wollenberg Katharina | Vieites David | Glaw Frank | Vences Miguel
Volume: 11
Issue: 1
Year: 2011
Both male and female identity influence variation in male signalling effort

Author(s): Lehtonen Topi | Svensson P Andreas | Wong Bob
Volume: 11
Issue: 1
Year: 2011
A horizontal gene transfer supported the evolution of an early metazoan biomineralization strategy

Author(s): Jackson Daniel | Macis Luciana | Reitner Joachim | Wörheide Gert
Volume: 11
Issue: 1
Year: 2011
Family structure and phylogenetic analysis of odorant receptor genes in the large yellow croaker (Larimichthys crocea)

Author(s): Zhou Yingsong | Yan Xiaojun | Xu Shanliang | Zhu Peng | He Xianxing | Liu Jianxin
Volume: 11
Issue: 1
Year: 2011
Molecular evolution of cyclin proteins in animals and fungi

Author(s): Gunbin Konstantin | Suslov Valentin | Turnaev Igor | Afonnikov Dmitry | Kolchanov Nikolay
Volume: 11
Issue: 1
Year: 2011
Molecular evolution of the LNX gene family

Author(s): Flynn Michael | Saha Orthis | Young Paul
Volume: 11
Issue: 1
Year: 2011
A survey of green plant tRNA 3'-end processing enzyme tRNase Zs, homologs of the candidate prostate cancer susceptibility protein ELAC2

Author(s): Fan Lijuan | Wang Zhikang | Liu Jinyu | Guo Weili | Yan Jie | Huang Ying
Volume: 11
Issue: 1
Year: 2011
Variations on a theme: diversification of cuticular hydrocarbons in a clade of cactophilic Drosophila

Author(s): Oliveira Cássia | Manfrin Maura | Sene Fábio | Jackson Larry | Etges William
Volume: 11
Issue: 1
Year: 2011
Evidence for acquisition of virulence effectors in pathogenic chytrids

Author(s): Sun Guiling | Yang Zefeng | Kosch Tiffany | Summers Kyle | Huang Jinling
Volume: 11
Issue: 1
Year: 2011
Stops making sense: translational trade-offs and stop codon reassignment

Author(s): Johnson Louise | Cotton James | Lichtenstein Conrad | Elgar Greg | Nichols Richard | Polly p David | Le Comber Steven
Volume: 11
Issue: 1
Year: 2011
Strong differences in the clonal variation of two Daphnia species from mountain lakes affected by overwintering strategy

Author(s): Hamrová Eva | Mergeay Joachim | Petrusek Adam
Volume: 11
Issue: 1
Year: 2011
Islands beneath islands: phylogeography of a groundwater amphipod crustacean in the Balearic archipelago

Author(s): Bauzà-Ribot Maria | Jaume Damià | Fornós Joan | Juan Carlos | Pons Joan
Volume: 11
Issue: 1
Year: 2011
Resurrection of an ancestral 5S rRNA

Author(s): Lu Qing | Fox George
Volume: 11
Issue: 1
Year: 2011
Tracking the evolutionary history of Cortinarius species in section Calochroi, with transoceanic disjunct distributions

Author(s): Garnica Sigisfredo | Spahn Philipp | Oertel Bernhard | Ammirati Joseph | Oberwinkler Franz
Volume: 11
Issue: 1
Year: 2011
Population connectivity: dam migration mitigations and contemporary site fidelity in arctic char

Author(s): Wollebæk Jens | Heggenes Jan | Røed Knut
Volume: 11
Issue: 1
Year: 2011
Conversion events in gene clusters

Author(s): Song Giltae | Hsu Chih-Hao | Riemer Cathy | Zhang Yu | Kim Hie | Hoffmann Federico | Zhang Louxin | Hardison Ross | Green Eric | Miller Webb
Volume: 11
Issue: 1
Year: 2011
Lafora disease E3-ubiquitin ligase malin is related to TRIM32 at both the phylogenetic and functional level

Author(s): Romá-Mateo Carlos | Moreno Daniel | Vernia Santiago | Rubio Teresa | Bridges Travis | Gentry Matthew | Sanz Pascual
Volume: 11
Issue: 1
Year: 2011
Evidence for a high mutation rate at rapidly evolving yeast centromeres

Author(s): Bensasson Douda
Volume: 11
Issue: 1
Year: 2011
Genetic adaptation of the antibacterial human innate immunity network

Author(s): Casals Ferran | Sikora Martin | Laayouni Hafid | Montanucci Ludovica | Muntasell Aura | Lazarus Ross | Calafell Francesc | Awadalla Philip | Netea Mihai | Bertranpetit Jaume
Volume: 11
Issue: 1
Year: 2011
Protein functional links in Trypanosoma brucei, identified by gene fusion analysis

Author(s): Dimitriadis Dimitris | Koumandou V Lila | Trimpalis Philip | Kossida Sophia
Volume: 11
Issue: 1
Year: 2011
The long-term consequences of hybridization between the two Daphnia species, D. galeata and D. dentifera, in mature habitats

Author(s): Ishida Seiji | Takahashi Akiko | Matsushima Noe | Yokoyama Jun | Makino Wataru | Urabe Jotaro | Kawata Masakado
Volume: 11
Issue: 1
Year: 2011
Histone variant innovation in a rapidly evolving chordate lineage

Author(s): Moosmann Alexandra | Campsteijn Coen | Jansen Pascal | Nasrallah Carole | Raasholm Martina | Stunnenberg Henk | Thompson Eric
Volume: 11
Issue: 1
Year: 2011
Reticulate evolution: frequent introgressive hybridization among chinese hares (genus lepus) revealed by analyses of multiple mitochondrial and nuclear DNA loci

Author(s): Liu Jiang | Yu Li | Arnold Michael | Wu Chun-Hua | Wu Shi-Fang | Lu Xin | Zhang Ya-Ping
Volume: 11
Issue: 1
Year: 2011
From Africa to Europe and back: refugia and range shifts cause high genetic differentiation in the Marbled White butterfly Melanargia galathea

Author(s): Habel Jan | Lens Luc | Rödder Dennis | Schmitt Thomas
Volume: 11
Issue: 1
Year: 2011
Obscured phylogeny and possible recombinational dormancy in Escherichia coli

Author(s): Leopold Shana | Sawyer Stanley | Whittam Thomas | Tarr Phillip
Volume: 11
Issue: 1
Year: 2011
On the alleged origin of geminiviruses from extrachromosomal DNAs of phytoplasmas

Author(s): Saccardo Federica | Cettul Emanuele | Palmano Sabrina | Noris Emanuela | Firrao Giuseppe
Volume: 11
Issue: 1
Year: 2011
The UlaG protein family defines novel structural and functional motifs grafted on an ancient RNase fold

Author(s): Fernandez Francisco | Garces Fernando | López-Estepa Miguel | Aguilar Juan | Baldomà Laura | Coll Miquel | Badia Josefa | Vega M Cristina
Volume: 11
Issue: 1
Year: 2011
Whale phylogeny and rapid radiation events revealed using novel retroposed elements and their flanking sequences

Author(s): Chen Zhuo | Xu Shixia | Zhou Kaiya | Yang Guang
Volume: 11
Issue: 1
Year: 2011
The homology of odontodes in gnathostomes: insights from Dlx gene expression in the dogfish, Scyliorhinus canicula

Author(s): Debiais-Thibaud Mélanie | Oulion Silvan | Bourrat Franck | Laurenti Patrick | Casane Didier | Borday-Birraux Véronique
Volume: 11
Issue: 1
Year: 2011
Large scale mitochondrial sequencing in Mexican Americans suggests a reappraisal of Native American origins

Author(s): Kumar Satish | Bellis Claire | Zlojutro Mark | Melton Phillip | Blangero John | Curran Joanne
Volume: 11
Issue: 1
Year: 2011
Horizontal and vertical growth of S. cerevisiae metabolic network

Author(s): Grassi Luigi | Tramontano Anna
Volume: 11
Issue: 1
Year: 2011
Molecular organization and phylogenetic analysis of 5S rDNA in crustaceans of the genus Pollicipes reveal birth-and-death evolution and strong purifying selection

Author(s): Perina Alejandra | Seoane David | González-Tizón Ana | Rodríguez-Fariña Fernanda | Martínez-Lage Andrés
Volume: 11
Issue: 1
Year: 2011
In search of the genetic footprints of Sumerians: a survey of Y-chromosome and mtDNA variation in the Marsh Arabs of Iraq

Author(s): Al-Zahery Nadia | Pala Maria | Battaglia Vincenza | Grugni Viola | Hamod Mohammed | Kashani Baharak | Olivieri Anna | Torroni Antonio | Santachiara-Benerecetti Augusta | Semino Ornella
Volume: 11
Issue: 1
Year: 2011
Evolution of ultraviolet vision in the largest avian radiation - the passerines

Author(s): Ödeen Anders | Håstad Olle | Alström Per
Volume: 11
Issue: 1
Year: 2011
Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination

Author(s): Acosta José | Eguiarte Luis | Santamaría Rosa | Bustos Patricia | Vinuesa Pablo | Martínez-Romero Esperanza | Dávila Guillermo | González Víctor
Volume: 11
Issue: 1
Year: 2011
Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function

Author(s): Niu Ao-lei | Wang Yin-qiu | Zhang Hui | Liao Cheng-hong | Wang Jin-kai | Zhang Rui | Che Jun | Su Bing
Volume: 11
Issue: 1
Year: 2011
Micro-evolutionary divergence patterns of mandible shapes in wild house mouse (Mus musculus) populations

Author(s): Boell Louis | Tautz Diethard
Volume: 11
Issue: 1
Year: 2011
Gene conversion and purifying selection shape nucleotide variation in gibbon L/M opsin genes

Author(s): Hiwatashi Tomohide | Mikami Akichika | Katsumura Takafumi | Suryobroto Bambang | Perwitasari-Farajallah Dyah | Malaivijitnond Suchinda | Siriaroonrat Boripat | Oota Hiroki | Goto Shunji | Kawamura Shoji
Volume: 11
Issue: 1
Year: 2011
A Bayesian framework to estimate diversification rates and their variation through time and space

Author(s): Silvestro Daniele | Schnitzler Jan | Zizka Georg
Volume: 11
Issue: 1
Year: 2011
A hitchhikers guide to the Galápagos: co-phylogeography of Galápagos mockingbirds and their parasites

Author(s): Štefka Jan | Hoeck Paquita | Keller Lukas | Smith Vincent
Volume: 11
Issue: 1
Year: 2011
Beyond bilateral symmetry: geometric morphometric methods for any type of symmetry

Author(s): Savriama Yoland | Klingenberg Christian
Volume: 11
Issue: 1
Year: 2011
Study of Sylvilagus rabbit TRIM5α species-specific domain: how ancient endoviruses could have shaped the antiviral repertoire in Lagomorpha

Author(s): de Matos Ana Lemos | van der Loo Wessel | Areal Helena | Lanning Dennis | Esteves Pedro
Volume: 11
Issue: 1
Year: 2011
Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1

Author(s): Yaklichkin Sergey Yu | Darnell Diana | Pier Maricela | Antin Parker | Hannenhalli Sridhar
Volume: 11
Issue: 1
Year: 2011
Hybridization of mouse lemurs: different patterns under different ecological conditions

Author(s): Hapke Andreas | Gligor Mark | Rakotondranary S Jacques | Rosenkranz David | Zupke Oliver
Volume: 11
Issue: 1
Year: 2011
Rate variation and estimation of divergence times using strict and relaxed clocks

Author(s): Brown Richard | Yang Ziheng
Volume: 11
Issue: 1
Year: 2011
Diversification and the rate of molecular evolution: no evidence of a link in mammals

Author(s): Goldie Xavier | Lanfear Robert | Bromham Lindell
Volume: 11
Issue: 1
Year: 2011
Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats

Author(s): Bongaerts Pim | Riginos Cynthia | Hay Kyra | van Oppen Madeleine | Hoegh-Guldberg Ove | Dove Sophie
Volume: 11
Issue: 1
Year: 2011
Little ecological divergence associated with speciation in two African rain forest tree genera

Author(s): Couvreur Thomas | Porter-Morgan Holly | Wieringa Jan | Chatrou Lars
Volume: 11
Issue: 1
Year: 2011
Visualization and Exploration of Conserved Regulatory Modules Using ReXSpecies 2

Author(s): Struckmann Stephan | Esch Daniel | Schöler Hans | Fuellen Georg
Volume: 11
Issue: 1
Year: 2011
Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling

Author(s): Gerard David | Gibbs H Lisle | Kubatko Laura
Volume: 11
Issue: 1
Year: 2011
Schmidtea mediterranea phylogeography: an old species surviving on a few Mediterranean islands?

Author(s): Lázaro Eva | Harrath Abdul | Stocchino Giacinta | Pala Maria | Baguñà Jaume | Riutort Marta
Volume: 11
Issue: 1
Year: 2011
Genomic, RNA, and ecological divergences of the Revolver transposon-like multi-gene family in Triticeae

Author(s): Tomita Motonori | Okutani Asuka | Beiles Avigdor | Nevo Eviatar
Volume: 11
Issue: 1
Year: 2011
Wolbachia infections that reduce immature insect survival: Predicted impacts on population replacement

Author(s): Crain Philip | Mains James | Suh Eunho | Huang Yunxin | Crowley Philip | Dobson Stephen
Volume: 11
Issue: 1
Year: 2011
Loss of genes for DNA recombination and repair in the reductive genome evolution of thioautotrophic symbionts of Calyptogena clams

Author(s): Kuwahara Hirokazu | Takaki Yoshihiro | Shimamura Shigeru | Yoshida Takao | Maeda Taro | Kunieda Takekazu | Maruyama Tadashi
Volume: 11
Issue: 1
Year: 2011
Evolution of the apomixis transmitting chromosome in Pennisetum

Author(s): Akiyama Yukio | Goel Shailendra | Conner Joann | Hanna Wayne | Yamada-Akiyama Hitomi | Ozias-Akins Peggy
Volume: 11
Issue: 1
Year: 2011
Y-chromosome phylogeny in the evolutionary net of chamois (genus Rupicapra)

Author(s): Pérez Trinidad | Hammer Sabine | Albornoz Jesús | Domínguez Ana
Volume: 11
Issue: 1
Year: 2011
Molecular characterization and evolution of a gene family encoding male-specific reproductive proteins in the African malaria vector Anopheles gambiae

Author(s): Mancini Emiliano | Baldini Francesco | Tammaro Federica | Calzetta Maria | Serrao Aurelio | George Phillip | Morlais Isabelle | Masiga Daniel | Sharakhov Igor | Rogers David | Catteruccia Flaminia | della Torre Alessandra
Volume: 11
Issue: 1
Year: 2011
Sex in the PAC: A hidden affair in dark septate endophytes?

Author(s): Zaffarano Pascal | Queloz Valentin | Duò Angelo | Grünig Christoph
Volume: 11
Issue: 1
Year: 2011
Evolutionary relationships of the old world fruit bats (Chiroptera, Pteropodidae): Another star phylogeny?

Author(s): Almeida Francisca | Giannini Norberto | DeSalle Rob | Simmons Nancy
Volume: 11
Issue: 1
Year: 2011
Ten new complete mitochondrial genomes of pulmonates (Mollusca: Gastropoda) and their impact on phylogenetic relationships

Author(s): White Tracy | Conrad Michele | Tseng Roger | Balayan Shaina | Golding Rosemary | de Frias Martins António | Dayrat Benoît
Volume: 11
Issue: 1
Year: 2011
Morphological and genetic divergence in Swedish postglacial stickleback (Pungitius pungitius) populations

Author(s): Mobley Kenyon | Lussetti Daniel | Johansson Frank | Englund Göran | Bokma Folmer
Volume: 11
Issue: 1
Year: 2011
Widespread Horizontal Gene Transfer from Circular Single-stranded DNA Viruses to Eukaryotic Genomes

Author(s): Liu Huiquan | Fu Yanping | Li Bo | Yu Xiao | Xie Jiatao | Cheng Jiasen | Ghabrial Said | Li Guoqing | Yi Xianhong | Jiang Daohong
Volume: 11
Issue: 1
Year: 2011
Protein-based signatures of functional evolution in Plasmodium falciparum

Author(s): Gardner Kate | Sinha Ipsita | Bustamante Leyla | Day Nicholas | White Nicholas | Woodrow Charles
Volume: 11
Issue: 1
Year: 2011
Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons

Author(s): Sanchez-Puerta Maria | Abbona Cinthia | Zhuo Shi | Tepe Eric | Bohs Lynn | Olmstead Richard | Palmer Jeffrey
Volume: 11
Issue: 1
Year: 2011
Hybridization and massive mtDNA unidirectional introgression between the closely related Neotropical toads Rhinella marina and R. schneideri inferred from mtDNA and nuclear markers

Author(s): Sequeira Fernando | Sodré Davidson | Ferrand Nuno | Bernardi José | Sampaio Iracilda | Schneider Horacio | Vallinoto Marcelo
Volume: 11
Issue: 1
Year: 2011
Local synteny and codon usage contribute to asymmetric sequence divergence of Saccharomyces cerevisiae gene duplicates

Author(s): Bu Lijing | Bergthorsson Ulfar | Katju Vaishali
Volume: 11
Issue: 1
Year: 2011
Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling

Author(s): Oliveira Claudio | Avelino Gleisy | Abe Kelly | Mariguela Tatiane | Benine Ricardo | Ortí Guillermo | Vari Richard | Corrêa e Castro Ricardo
Volume: 11
Issue: 1
Year: 2011
Coevolution of amino acid residues in the key photosynthetic enzyme Rubisco

Author(s): Wang Mingcong | Kapralov Maxim | Anisimova Maria
Volume: 11
Issue: 1
Year: 2011
A close-up view on ITS2 evolution and speciation - a case study in the Ulvophyceae (Chlorophyta, Viridiplantae)

Author(s): Caisová Lenka | Marin Birger | Melkonian Michael
Volume: 11
Issue: 1
Year: 2011
Bottlenecks drive temporal and spatial genetic changes in alpine caddisfly metapopulations

Author(s): Shama Lisa | Kubow Karen | Jokela Jukka | Robinson Christopher
Volume: 11
Issue: 1
Year: 2011
Confrontational scavenging as a possible source for language and cooperation

Author(s): Bickerton Derek | Szathmáry Eörs
Volume: 11
Issue: 1
Year: 2011
Evolutionary view of acyl-CoA diacylglycerol acyltransferase (DGAT), a key enzyme in neutral lipid biosynthesis

Author(s): Turchetto-Zolet Andreia | Maraschin Felipe | de Morais Guilherme | Cagliari Alexandro | Andrade Cláudia | Margis-Pinheiro Marcia | Margis Rogerio
Volume: 11
Issue: 1
Year: 2011
Molecular evolution under increasing transposable element burden in Drosophila: A speed limit on the evolutionary arms race

Author(s): Castillo Dean | Mell Joshua | Box Kimberly | Blumenstiel Justin
Volume: 11
Issue: 1
Year: 2011
A geographic cline induced by negative frequency-dependent selection

Author(s): Takahashi Yuma | Morita Satoru | Yoshimura Jin | Watanabe Mamoru
Volume: 11
Issue: 1
Year: 2011
Novel male-biased expression in paralogs of the aphid slimfast nutrient amino acid transporter expansion

Author(s): Duncan Rebecca | Nathanson Lubov | Wilson Alex
Volume: 11
Issue: 1
Year: 2011
Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes

Author(s): Coelho Marco | Gonçalves Paula | Sampaio José
Volume: 11
Issue: 1
Year: 2011
Molecular evolution of Adh and LEAFY and the phylogenetic utility of their introns in Pyrus (Rosaceae)

Author(s): Zheng Xiaoyan | Hu Chunyun | Spooner David | Liu Jing | Cao Jiashu | Teng Yuanwen
Volume: 11
Issue: 1
Year: 2011
Diversity dynamics in New Caledonia: towards the end of the museum model?

Author(s): Espeland Marianne | Murienne Jérôme
Volume: 11
Issue: 1
Year: 2011
Fossil gaps inferred from phylogenies alter the apparent nature of diversification in dragonflies and their relatives

Author(s): Davis Robert | Nicholson David | Saunders Emily | Mayhew Peter
Volume: 11
Issue: 1
Year: 2011
Evolution of response dynamics underlying bacterial chemotaxis

Author(s): Soyer Orkun | Goldstein Richard
Volume: 11
Issue: 1
Year: 2011
The mitochondrial genome of Sinentomon erythranum (Arthropoda: Hexapoda: Protura): an example of highly divergent evolution

Author(s): Chen Wan-Jun | Bu Yun | Carapelli Antonio | Dallai Romano | Li Sheng | Yin Wen-Ying | Luan Yun-Xia
Volume: 11
Issue: 1
Year: 2011
Why small males have big sperm: dimorphic squid sperm linked to alternative mating behaviours

Author(s): Iwata Yoko | Shaw Paul | Fujiwara Eiji | Shiba Kogiku | Kakiuchi Yasutaka | Hirohashi Noritaka
Volume: 11
Issue: 1
Year: 2011
Perspective on sequence evolution of microsatellite locus (CCG)n in Rv0050 gene from Mycobacterium tuberculosis

Author(s): Qin Lianhua | Wang Jie | Zheng Ruijuan | Lu Junmei | Yang Hua | Liu Zhonghua | Cui Zhenling | Jin Ruiliang | Feng Yonghong | Hu Zhongyi
Volume: 11
Issue: 1
Year: 2011
Differential strengths of selection on S-RNases from Physalis and Solanum (Solanaceae)

Author(s): Paape Timothy | Kohn Joshua
Volume: 11
Issue: 1
Year: 2011
Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects

Author(s): Rödelsperger Christian | Sommer Ralf
Volume: 11
Issue: 1
Year: 2011
Molecular evolution of a chordate specific family of G protein-coupled receptors

Author(s): Kurtenbach Stefan | Mayer Christoph | Pelz Thomas | Hatt Hanns | Leese Florian | Neuhaus Eva
Volume: 11
Issue: 1
Year: 2011
At last, a Pennsylvanian stem-stonefly (Plecoptera) discovered

Author(s): Béthoux Olivier | Cui Yingying | Kondratieff Boris | Stark Bill | Ren Dong
Volume: 11
Issue: 1
Year: 2011
Electronic revolution in plant taxonomy

Author(s): Moylan Elizabeth
Volume: 11
Issue: 1
Year: 2011
Characterisation of marsupial PHLDA2 reveals eutherian specific acquisition of imprinting

Author(s): Suzuki Shunsuke | Shaw Geoffrey | Kaneko-Ishino Tomoko | Ishino Fumitoshi | Renfree Marilyn
Volume: 11
Issue: 1
Year: 2011
Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair

Author(s): Wu Dong-Dong | Irwin David | Zhang Ya-Ping
Volume: 8
Issue: 1
Year: 2008
The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage

Author(s): Kumar Satish | Padmanabham PBSV | Ravuri Rajasekhara | Uttaravalli Kiran | Koneru Padmaja | Mukherjee P Aditi | Das B | Kotal M | Xaviour D | Saheb SY | Rao VR
Volume: 8
Issue: 1
Year: 2008
The molecular basis of color vision in colorful fish: Four Long Wave-Sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites

Author(s): Ward Matthew | Churcher Allison | Dick Kevin | Laver Chris | Owens Greg | Polack Megan | Ward Pam | Breden Felix | Taylor John
Volume: 8
Issue: 1
Year: 2008
Duplications and functional divergence of ADP-glucose pyrophosphorylase genes in plants

Author(s): Georgelis Nikolaos | Braun Edward | Hannah L Curtis
Volume: 8
Issue: 1
Year: 2008
Phylogeography of mtDNA haplogroup R7 in the Indian peninsula

Author(s): Chaubey Gyaneshwer | Karmin Monika | Metspalu Ene | Metspalu Mait | Selvi-Rani Deepa | Singh Vijay | Parik Jüri | Solnik Anu | Naidu B Prathap | Kumar Ajay | Adarsh Niharika | Mallick Chandana | Trivedi Bhargav | Prakash Swami | Reddy Ramesh | Shukla Parul | Bhagat Sanjana | Verma Swati | Vasnik Samiksha | Khan Imran | Barwa Anshu | Sahoo Dipti | Sharma Archana | Rashid Mamoon | Chandra Vishal | Reddy Alla | Torroni Antonio | Foley Robert | Thangaraj Kumarasamy | Singh Lalji | Kivisild Toomas | Villems Richard
Volume: 8
Issue: 1
Year: 2008
Selection shapes malaria genomes and drives divergence between pathogens infecting hominids versus rodents

Author(s): Prugnolle Franck | McGee Kate | Keebler Jon | Awadalla Philip
Volume: 8
Issue: 1
Year: 2008
An amphioxus orthologue of the estrogen receptor that does not bind estradiol: Insights into estrogen receptor evolution

Author(s): Paris Mathilde | Pettersson Katarina | Schubert Michael | Bertrand Stephanie | Pongratz Ingemar | Escriva Hector | Laudet Vincent
Volume: 8
Issue: 1
Year: 2008
The dynamic evolutionary history of the bananaquit (Coereba flaveola) in the Caribbean revealed by a multigene analysis

Author(s): Bellemain Eva | Bermingham Eldredge | Ricklefs Robert
Volume: 8
Issue: 1
Year: 2008
Distribution of the transposable elements bilbo and gypsy in original and colonizing populations of Drosophila subobscura

Author(s): García Guerreiro María Pilar | Chávez-Sandoval Blanca | Balanyà Joan | Serra Lluís | Fontdevila Antonio
Volume: 8
Issue: 1
Year: 2008
Genomic analysis of the TRIM family reveals two groups of genes with distinct evolutionary properties

Author(s): Sardiello Marco | Cairo Stefano | Fontanella Bianca | Ballabio Andrea | Meroni Germana
Volume: 8
Issue: 1
Year: 2008
Genetic structure and breeding system in a social wasp and its social parasite

Author(s): Hoffman Eric | Kovacs Jennifer | Goodisman Michael
Volume: 8
Issue: 1
Year: 2008
The coevolution of cooperation and dispersal in social groups and its implications for the emergence of multicellularity

Author(s): Hochberg Michael | Rankin Daniel | Taborsky Michael
Volume: 8
Issue: 1
Year: 2008
Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

Author(s): Krause Johannes | Unger Tina | Noçon Aline | Malaspinas Anna-Sapfo | Kolokotronis Sergios-Orestis | Stiller Mathias | Soibelzon Leopoldo | Spriggs Helen | Dear Paul | Briggs Adrian | Bray Sarah | O'Brien Stephen | Rabeder Gernot | Matheus Paul | Cooper Alan | Slatkin Montgomery | Pääbo Svante | Hofreiter Michael
Volume: 8
Issue: 1
Year: 2008
ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales)

Author(s): Keller Alexander | Schleicher Tina | Förster Frank | Ruderisch Benjamin | Dandekar Thomas | Müller Tobias | Wolf Matthias
Volume: 8
Issue: 1
Year: 2008
The evolutionary origin of the Runx/CBFbeta transcription factors – Studies of the most basal metazoans

Author(s): Sullivan James | Sher Daniel | Eisenstein Miriam | Shigesada Katsuya | Reitzel Adam | Marlow Heather | Levanon Ditsa | Groner Yoram | Finnerty John | Gat Uri
Volume: 8
Issue: 1
Year: 2008
Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni

Author(s): Taboada Eduardo | MacKinnon Joanne | Luebbert Christian | Gannon Victor | Nash John | Rahn Kris
Volume: 8
Issue: 1
Year: 2008
Tracing the first steps of American sturgeon pioneers in Europe

Author(s): Ludwig Arne | Arndt Ursula | Lippold Sebastian | Benecke Norbert | Debus Lutz | King Timothy | Matsumura Shuichi
Volume: 8
Issue: 1
Year: 2008
Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences

Author(s): Azuma Yoichiro | Kumazawa Yoshinori | Miya Masaki | Mabuchi Kohji | Nishida Mutsumi
Volume: 8
Issue: 1
Year: 2008
Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: Implications for the evolutionary history of the double karyomastigont of diplomonads

Author(s): Kolisko Martin | Cepicka Ivan | Hampl Vladimir | Leigh Jessica | Roger Andrew | Kulda Jaroslav | Simpson Alastair | Flegr Jaroslav
Volume: 8
Issue: 1
Year: 2008
A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces: Acanthopterygii) based on whole mitochondrial genome sequences: Basal ecological diversification?

Author(s): Yamanoue Yusuke | Miya Masaki | Matsuura Keiichi | Katoh Masaya | Sakai Harumi | Nishida Mutsumi
Volume: 8
Issue: 1
Year: 2008
Enzyme phylogenies as markers for the oxidation state of the environment: The case of respiratory arsenate reductase and related enzymes

Author(s): Duval Simon | Ducluzeau Anne-Lise | Nitschke Wolfgang | Schoepp-Cothenet Barbara
Volume: 8
Issue: 1
Year: 2008
Using supernetworks to distinguish hybridization from lineage-sorting

Author(s): Holland Barbara | Benthin Steffi | Lockhart Peter | Moulton Vincent | Huber Katharina
Volume: 8
Issue: 1
Year: 2008
Topology of evolving, mutagenized viral populations: quasispecies expansion, compression, and operation of negative selection

Author(s): Ojosnegros Samuel | Agudo Rubén | Sierra Macarena | Briones Carlos | Sierra Saleta | González- López Claudia | Domingo Esteban | Cristina Juan
Volume: 8
Issue: 1
Year: 2008
Genetic evidence links invasive monk parakeet populations in the United States to the international pet trade

Author(s): Russello Michael | Avery Michael | Wright Timothy
Volume: 8
Issue: 1
Year: 2008
High divergence in primate-specific duplicated regions: Human and chimpanzee Chorionic Gonadotropin Beta genes

Author(s): Hallast Pille | Saarela Janna | Palotie Aarno | Laan Maris
Volume: 8
Issue: 1
Year: 2008
Complex population genetic and demographic history of the Salangid, Neosalanx taihuensis, based on cytochrome b sequences

Author(s): Zhao Liang | Zhang Jie | Liu Zhijin | Funk Stephan | Wei Fuwen | Xu Muqi | Li Ming
Volume: 8
Issue: 1
Year: 2008
Evolution of a behavior-linked microsatellite-containing element in the 5' flanking region of the primate AVPR1A gene

Author(s): Donaldson Zoe | Kondrashov Fyodor | Putnam Andrea | Bai Yaohui | Stoinski Tara | Hammock Elizabeth | Young Larry
Volume: 8
Issue: 1
Year: 2008
Tracing the colonization history of the Indian Ocean scops-owls (Strigiformes: Otus) with further insight into the spatio-temporal origin of the Malagasy avifauna

Author(s): Fuchs Jérôme | Pons Jean-Marc | Goodman Steven | Bretagnolle Vincent | Melo Martim | Bowie Rauri | Currie David | Safford Roger | Virani Munir | Thomsett Simon | Hija Alawi | Cruaud Corinne | Pasquet Eric
Volume: 8
Issue: 1
Year: 2008
Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes

Author(s): Becker Burkhard | Hoef-Emden Kerstin | Melkonian Michael
Volume: 8
Issue: 1
Year: 2008
Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily

Author(s): Lecompte Emilie | Aplin Ken | Denys Christiane | Catzeflis François | Chades Marion | Chevret Pascale
Volume: 8
Issue: 1
Year: 2008
Timing and deciphering mitochondrial DNA macro-haplogroup R0 variability in Central Europe and Middle East

Author(s): Brandstätter Anita | Zimmermann Bettina | Wagner Janine | Göbel Tanja | Röck Alexander | Salas Antonio | Carracedo Angel | Parson Walther
Volume: 8
Issue: 1
Year: 2008
Diversification of myco-heterotrophic angiosperms: Evidence from Burmanniaceae

Author(s): Merckx Vincent | Chatrou Lars | Lemaire Benny | Sainge Moses | Huysmans Suzy | Smets Erik
Volume: 8
Issue: 1
Year: 2008
Phylogenetic analyses suggest multiple changes of substrate specificity within the Glycosyl hydrolase 20 family

Author(s): Intra Jari | Pavesi Giulio | Horner David
Volume: 8
Issue: 1
Year: 2008
Genetic origin, admixture, and asymmetry in maternal and paternal human lineages in Cuba

Author(s): Mendizabal Isabel | Sandoval Karla | Berniell-Lee Gemma | Calafell Francesc | Salas Antonio | Martínez-Fuentes Antonio | Comas David
Volume: 8
Issue: 1
Year: 2008
On the nature of fur evolution: A phylogenetic approach in Actinobacteria

Author(s): Santos Catarina | Vieira João | Tavares Fernando | Benson David | Tisa Louis | Berry Alison | Moradas-Ferreira Pedro | Normand Philippe
Volume: 8
Issue: 1
Year: 2008
Habitat shifts in the evolutionary history of a Neotropical flycatcher lineage from forest and open landscapes

Author(s): Rheindt Frank | Christidis Les | Norman Janette
Volume: 8
Issue: 1
Year: 2008
Accelerated exchange of exon segments in Viperid three-finger toxin genes (Sistrurus catenatus edwardsii; Desert Massasauga)

Author(s): Doley Robin | Pahari Susanta | Mackessy Stephen | Kini R Manjunatha
Volume: 8
Issue: 1
Year: 2008
Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi

Author(s): Veerappan Chendhore | Avramova Zoya | Moriyama Etsuko
Volume: 8
Issue: 1
Year: 2008
Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken

Author(s): Kanginakudru Sriramana | Metta Muralidhar | Jakati RD | Nagaraju J
Volume: 8
Issue: 1
Year: 2008
The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains

Author(s): Desai Salil | Heffelfinger Amy | Orcutt Timothy | Litman Gary | Yoder Jeffrey
Volume: 8
Issue: 1
Year: 2008
Male-biased genes are overrepresented among novel Drosophila pseudoobscura sex-biased genes

Author(s): Metta Muralidhar | Schlötterer Christian
Volume: 8
Issue: 1
Year: 2008
The genetic architecture of susceptibility to parasites

Author(s): Wilfert Lena | Schmid-Hempel Paul
Volume: 8
Issue: 1
Year: 2008
Measuring the prevalence of regional mutation rates: an analysis of silent substitutions in mammals, fungi, and insects

Author(s): Fox Aleah | Tuch Brian | Chuang Jeffrey
Volume: 8
Issue: 1
Year: 2008
Identification of geographically distributed sub-populations of Leishmania (Leishmania) major by microsatellite analysis

Author(s): Al-Jawabreh Amer | Diezmann Stephanie | Müller Michaela | Wirth Thierry | Schnur Lionel | Strelkova Margarita | Kovalenko Dmitri | Razakov Shavkat | Schwenkenbecher Jan | Kuhls Katrin | Schönian Gabriele
Volume: 8
Issue: 1
Year: 2008
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