Academic Journals Database
Disseminating quality controlled scientific knowledge

Advances in Bioinformatics

ISSN: 1687--8027
Publisher: Hindawi Publishing Corporation


ADD TO MY LIST
 
Recent Bioinformatics Advances in the Analysis of High Throughput Flow Cytometry Data

Author(s): Raphael Gottardo | Ryan R. Brinkman | George Luta | Matt P. Wand
Volume: 2009
Year: 2009
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines

Author(s): Seizi Someya | Masanori Kakuta | Mizuki Morita | Kazuya Sumikoshi | Wei Cao | Zhenyi Ge | Osamu Hirose | Shugo Nakamura | Tohru Terada | Kentaro Shimizu
Volume: 2010
Year: 2010
Designing Efficient Spaced Seeds for SOLiD Read Mapping

Author(s): Laurent Noé | Marta Gîrdea | Gregory Kucherov
Volume: 2010
Year: 2010
Tumor Classification Using High-Order Gene Expression Profiles Based on Multilinear ICA

Author(s): Ming-gang Du | Shan-Wen Zhang | Hong Wang
Volume: 2009
Year: 2009
A Combinatory Approach for Selecting Prognostic Genes in Microarray Studies of Tumour Survivals

Author(s): Qihua Tan | Mads Thomassen | Kirsten M. Jochumsen | Ole Mogensen | Kaare Christensen | Torben A. Kruse
Volume: 2009
Year: 2009
Assessing the Quality of Whole Genome Alignments in Bacteria

Author(s): Firas Swidan | Ron Shamir
Volume: 2009
Year: 2009
iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor

Author(s): Kyongryun Lee | Florian Hahne | Deepayan Sarkar | Robert Gentleman
Volume: 2009
Year: 2009
Automatic Clustering of Flow Cytometry Data with Density-Based Merging

Author(s): Guenther Walther | Noah Zimmerman | Wayne Moore | David Parks | Stephen Meehan | Ilana Belitskaya | Jinhui Pan | Leonore Herzenberg
Volume: 2009
Year: 2009
Network Properties for Ranking Predicted miRNA Targets in Breast Cancer

Author(s): Jörg Linde | Björn Olsson | Zelmina Lubovac
Volume: 2009
Year: 2009
Pathway-Based Feature Selection Algorithm for Cancer Microarray Data

Author(s): Nirmalya Bandyopadhyay | Tamer Kahveci | Steve Goodison | Y. Sun | Sanjay Ranka
Volume: 2009
Year: 2009
A Topological Description of Hubs in Amino Acid Interaction Networks

Author(s): Omar Gaci
Volume: 2010
Year: 2010
The FAST-AIMS Clinical Mass Spectrometry Analysis System

Author(s): Nafeh Fananapazir | Alexander Statnikov | Constantin F. Aliferis
Volume: 2009
Year: 2009
The KM-Algorithm Identifies Regulated Genes in Time Series Expression Data

Author(s): Martina Bremer | R. W. Doerge
Volume: 2009
Year: 2009
Bridging the Divide between Manual Gating and Bioinformatics with the Bioconductor Package flowFlowJo

Author(s): John J. Gosink | Gary D. Means | William A. Rees | Cheng Su | Hugh A. Rand
Volume: 2009
Year: 2009
Analysis of High-Throughput Flow Cytometry Data Using plateCore

Author(s): Errol Strain | Florian Hahne | Ryan R. Brinkman | Perry Haaland
Volume: 2009
Year: 2009
A Survey of Flow Cytometry Data Analysis Methods

Author(s): Ali Bashashati | Ryan R. Brinkman
Volume: 2009
Year: 2009
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput “omics” Data

Author(s): Chuming Chen | Peter B. McGarvey | Hongzhan Huang | Cathy H. Wu
Volume: 2010
Year: 2010
Systems Biology: The Next Frontier for Bioinformatics

Author(s): Vladimir A. Likić | Malcolm J. McConville | Trevor Lithgow | Antony Bacic
Volume: 2010
Year: 2010
A Signal Processing Method to Explore Similarity in Protein Flexibility

Author(s): Simina Vasilache | Nazanin Mirshahi | Soo-Yeon Ji | James Mottonen | Donald J. Jacobs | Kayvan Najarian
Volume: 2010
Year: 2010
ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities

Author(s): Dhwani K. Desai | Soumyadeep Nandi | Prashant K. Srivastava | Andrew M. Lynn
Volume: 2011
Year: 2011
Metagenome Fragment Classification Using N-Mer Frequency Profiles

Author(s): Gail Rosen | Elaine Garbarine | Diamantino Caseiro | Robi Polikar | Bahrad Sokhansanj
Volume: 2008
Year: 2008
NCR-PCOPGene: An Exploratory Tool for Analysis of Sample-Classes Effect on Gene-Expression Relationships

Author(s): Juan Cedano | Mario Huerta | Enrique Querol
Volume: 2008
Year: 2008
A Pathway Analysis Tool for Analyzing Microarray Data of Species with Low Physiological Information

Author(s): M. F. W. te Pas | S. van Hemert | B. Hulsegge | A. J. W. Hoekman | M. H. Pool | J. M. J. Rebel | M. A. Smits
Volume: 2008
Year: 2008
FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data

Author(s): Wade T. Rogers | Herbert A. Holyst
Volume: 2009
Year: 2009
Merging Mixture Components for Cell Population Identification in Flow Cytometry

Author(s): Greg Finak | Ali Bashashati | Ryan Brinkman | Raphaël Gottardo
Volume: 2009
Year: 2009
Fluorescence Intensity Normalisation: Correcting for Time Effects in Large-Scale Flow Cytometric Analysis

Author(s): Calliope A. Dendrou | Erik Fung | Laura Esposito | John A. Todd | Linda S. Wicker | Vincent Plagnol
Volume: 2009
Year: 2009
Synonymous Codon Usage Analysis of Thirty Two Mycobacteriophage Genomes

Author(s): Sameer Hassan | Vasantha Mahalingam | Vanaja Kumar
Volume: 2009
Year: 2009
Tree-Based Methods for Discovery of Association between Flow Cytometry Data and Clinical Endpoints

Author(s): M. Eliot | L. Azzoni | C. Firnhaber | W. Stevens | D. K. Glencross | I. Sanne | L. J. Montaner | A. S. Foulkes
Volume: 2009
Year: 2009
Algorithmic Assessment of Vaccine-Induced Selective Pressure and Its Implications on Future Vaccine Candidates

Author(s): Mones S. Abu-Asab | Majid Laassri | Hakima Amri
Volume: 2010
Year: 2010
Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks

Author(s): Orhan Çamoğlu | Tolga Can | Ambuj K. Singh
Volume: 2009
Year: 2009
Testing the Coding Potential of Conserved Short Genomic Sequences

Author(s): Jing Wu
Volume: 2010
Year: 2010
Evolution and Diversity of the Human Hepatitis D Virus Genome

Author(s): Chi-Ruei Huang | Szecheng J. Lo
Volume: 2010
Year: 2010
PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools

Author(s): Adeel Malik | Ahmad Firoz | Vivekanand Jha | Shandar Ahmad
Volume: 2010
Year: 2010
Modelling Nonstationary Gene Regulatory Processes

Author(s): Marco Grzegorcyzk | Dirk Husmeier | Jörg Rahnenführer
Volume: 2010
Year: 2010
Finding Biomarker Signatures in Pooled Sample Designs: A Simulation Framework for Methodological Comparisons

Author(s): Anna Telaar | Gerd Nürnberg | Dirk Repsilber
Volume: 2010
Year: 2010
Applying Small-Scale DNA Signatures as an Aid in Assembling Soybean Chromosome Sequences

Author(s): Myron Peto | David M. Grant | Randy C. Shoemaker | Steven B. Cannon
Volume: 2010
Year: 2010
GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation

Author(s): Mark Gosink | Sawsan Khuri | Camilo Valdes | Zhijie Jiang | Nicholas F. Tsinoremas
Volume: 2011
Year: 2011
Polynomial Supertree Methods Revisited

Author(s): Malte Brinkmeyer | Thasso Griebel | Sebastian Böcker
Volume: 2011
Year: 2011
An Integrated Framework to Model Cellular Phenotype as a Component of Biochemical Networks

Author(s): Michael Gormley | Viswanadha U. Akella | Judy N. Quong | Andrew A. Quong
Volume: 2011
Year: 2011
NovelSNPer: A Fast Tool for the Identification and Characterization of Novel SNPs and InDels

Author(s): Jens Aßmus | Armin O. Schmitt | Ralf H. Bortfeldt | Gudrun A. Brockmann
Volume: 2011
Year: 2011
Automated Quantitative Assessment of Proteins' Biological Function in Protein Knowledge Bases

Author(s): Gabriele Mayr | Günter Lepperdinger | Peter Lackner
Volume: 2008
Year: 2008
A Tutorial of the Poisson Random Field Model in Population Genetics

Author(s): Praveen Sethupathy | Sridhar Hannenhalli
Volume: 2008
Year: 2008
Genevestigator V3: A Reference Expression Database for the Meta-Analysis of Transcriptomes

Author(s): Tomas Hruz | Oliver Laule | Gabor Szabo | Frans Wessendorp | Stefan Bleuler | Lukas Oertle | Peter Widmayer | Wilhelm Gruissem | Philip Zimmermann
Volume: 2008
Year: 2008
Comparing Quantitative Trait Loci and Gene Expression Data

Author(s): Bing Han | Naomi S. Altman | Jessica A. Mong | Laura Cousino Klein | Donald W. Pfaff | David J. Vandenbergh
Volume: 2008
Year: 2008
Genomic Promoter Analysis Predicts Functional Transcription Factor Binding

Author(s): J. Sunil Rao | Suresh Karanam | Colleen D. McCabe | Carlos S. Moreno
Volume: 2008
Year: 2008
Metagenome Fragment Classification Using N-Mer Frequency Profiles

Author(s): Gail Rosen | Elaine Garbarine | Diamantino Caseiro | Robi Polikar | Bahrad Sokhansanj
Volume: 2008
Year: 2008
NCR-PCOPGene: An Exploratory Tool for Analysis of Sample-Classes Effect on Gene-Expression Relationships

Author(s): Juan Cedano | Mario Huerta | Enrique Querol
Volume: 2008
Year: 2008
A Pathway Analysis Tool for Analyzing Microarray Data of Species with Low Physiological Information

Author(s): M. F. W. te Pas | S. van Hemert | B. Hulsegge | A. J. W. Hoekman | M. H. Pool | J. M. J. Rebel | M. A. Smits
Volume: 2008
Year: 2008
Features-Based Deisotoping Method for Tandem Mass Spectra

Author(s): Zheng Yuan | Jinhong Shi | Wenjun Lin | Bolin Chen | Fang-Xiang Wu
Volume: 2011
Year: 2011
Structural Basis for Species Selectivity in the HIV-1 gp120-CD4 Interaction: Restoring Affinity to gp120 in Murine CD4 Mimetic Peptides

Author(s): Kristin Kassler | Julia Meier | Jutta Eichler | Heinrich Sticht
Volume: 2011
Year: 2011
Training Experimental Biologists in Bioinformatics

Author(s): Pedro Fernandes | Pooja Jain | Catarina Moita
Volume: 2012
Year: 2012
Data-Driven Compensation for Flow Cytometry of Solid Tissues

Author(s): Nickolaas Maria van Rodijnen | Math Pieters | Sjack Hoop | Marius Nap
Volume: 2011
Year: 2011
A Growth Curve Model with Fractional Polynomials for Analysing Incomplete Time-Course Data in Microarray Gene Expression Studies

Author(s): Qihua Tan | Mads Thomassen | Jacob v. B. Hjelmborg | Anders Clemmensen | Klaus Ejner Andersen | Thomas K. Petersen | Matthew McGue | Kaare Christensen | Torben A. Kruse
Volume: 2011
Year: 2011
Predicting Flavonoid UGT Regioselectivity

Author(s): Rhydon Jackson | Debra Knisley | Cecilia McIntosh | Phillip Pfeiffer
Volume: 2011
Year: 2011
Cotranslational Protein Folding and Terminus Hydrophobicity

Author(s): Sheenal Srivastava | Yumi Patton | David W. Fisher | Graham R. Wood
Volume: 2011
Year: 2011
Computational Design of a DNA- and Fc-Binding Fusion Protein

Author(s): Jonas Winkler | Giuliano Armano | J. Nikolaj Dybowski | Oliver Kuhn | Filippo Ledda | Dominik Heider
Volume: 2011
Year: 2011
Genome Evolution

Author(s): Izabela Makałowska | Igor B. Rogozin | Wojciech Makałowski
Volume: 2010
Year: 2010
Neutropenia Prediction Based on First-Cycle Blood Counts Using a FOS-3NN Classifier

Author(s): Elize A. Shirdel | Michael J. Korenberg | Yolanda Madarnas
Volume: 2011
Year: 2011
Maximum Recommended Dosage of Lithium for Pregnant Women Based on a PBPK Model for Lithium Absorption

Author(s): Scott Horton | Amalie Tuerk | Daniel Cook | Jiadi Cook | Prasad Dhurjati
Volume: 2012
Year: 2012
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

Author(s): Julien Allali | Cédric Saule | Cédric Chauve | Yves d’Aubenton-Carafa | Alain Denise | Christine Drevet | Pascal Ferraro | Daniel Gautheret | Claire Herrbach | Fabrice Leclerc | Antoine de Monte | Aida Ouangraoua | Marie-France Sagot | Michel Termier | Claude Thermes | Hélène Touzet
Volume: 2012
Year: 2012
A Topology-Based Metric for Measuring Term Similarity in the Gene Ontology

Author(s): Gaston K. Mazandu | Nicola J. Mulder
Volume: 2012
Year: 2012
Applications of Natural Language Processing in Biodiversity Science

Author(s): Anne E. Thessen | Hong Cui | Dmitry Mozzherin
Volume: 2012
Year: 2012
BioEve Search: A Novel Framework to Facilitate Interactive Literature Search

Author(s): Syed Toufeeq Ahmed | Hasan Davulcu | Sukru Tikves | Radhika Nair | Zhongming Zhao
Volume: 2012
Year: 2012
Sequence Complexity of Chromosome 3 in Caenorhabditis elegans

Author(s): Gaetano Pierro
Volume: 2012
Year: 2012
Detecting Cancer Outlier Genes with Potential Rearrangement Using Gene Expression Data and Biological Networks

Author(s): Mohammed Alshalalfa | Tarek A. Bismar | Reda Alhajj
Volume: 2012
Year: 2012
Producing High-Accuracy Lattice Models from Protein Atomic Coordinates Including Side Chains

Author(s): Martin Mann | Rhodri Saunders | Cameron Smith | Rolf Backofen | Charlotte M. Deane
Volume: 2012
Year: 2012
Gap Detection for Genome-Scale Constraint-Based Models

Author(s): J. Paul Brooks | William P. Burns | Stephen S. Fong | Chris M. Gowen | Seth B. Roberts
Volume: 2012
Year: 2012
A High-Throughput Computational Framework for Identifying Significant Copy Number Aberrations from Array Comparative Genomic Hybridisation Data

Author(s): Ian Roberts | Stephanie A. Carter | Cinzia G. Scarpini | Konstantina Karagavriilidou | Jenny C. J. Barna | Mark Calleja | Nicholas Coleman
Volume: 2012
Year: 2012
Flux Analysis of the Trypanosoma brucei Glycolysis Based on a Multiobjective-Criteria Bioinformatic Approach

Author(s): Amine Ghozlane | Frédéric Bringaud | Hayssam Soueidan | Isabelle Dutour | Fabien Jourdan | Patricia Thébault
Volume: 2012
Year: 2012
CMD: A Database to Store the Bonding States of Cysteine Motifs with Secondary Structures

Author(s): Hamed Bostan | Naomie Salim | Zeti Azura Hussein | Peter Klappa | Mohd Shahir Shamsir
Volume: 2012
Year: 2012
Wavelet Packet Entropy for Heart Murmurs Classification

Author(s): Fatemeh Safara | Shyamala Doraisamy | Azreen Azman | Azrul Jantan | Sri Ranga
Volume: 2012
Year: 2012
Do Peers See More in a Paper Than Its Authors?

Author(s): Anna Divoli | Preslav Nakov | Marti A. Hearst
Volume: 2012
Year: 2012
Application of an Integrative Computational Framework in Trancriptomic Data of Atherosclerotic Mice Suggests Numerous Molecular Players

Author(s): Olga Papadodima | Allan Sirsjö | Fragiskos N. Kolisis | Aristotelis Chatziioannou
Volume: 2012
Year: 2012
MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate Cancer

Author(s): Mohammed Alshalalfa
Volume: 2012
Year: 2012
Intervention in Biological Phenomena via Feedback Linearization

Author(s): Mohamed Amine Fnaiech | Hazem Nounou | Mohamed Nounou | Aniruddha Datta
Volume: 2012
Year: 2012
In Silico Docking of HNF-1a Receptor Ligands

Author(s): Gumpeny Ramachandra Sridhar | Padmanabhuni Venkata Nageswara Rao | Dowluru SVGK Kaladhar | Tatavarthi Uma Devi | Sali Veeresh Kumar
Volume: 2012
Year: 2012
Statistical Analysis of Terminal Extensions of Protein β-Strand Pairs

Author(s): Ning Zhang | Shan Gao | Lei Zhang | Jishou Ruan | Tao Zhang
Volume: 2013
Year: 2013
MRMPath and MRMutation, Facilitating Discovery of Mass Transitions for Proteotypic Peptides in Biological Pathways Using a Bioinformatics Approach

Author(s): Chiquito Crasto | Chandrahas Narne | Mikako Kawai | Landon Wilson | Stephen Barnes
Volume: 2013
Year: 2013
Literature Mining Solutions for Life Science Research

Author(s): Jörg Hakenberg | Goran Nenadic | Dietrich Rebholz-Schuhmann | Jin-Dong Kim
Volume: 2013
Year: 2013
Correction of Spatial Bias in Oligonucleotide Array Data

Author(s): Philippe Serhal | Sébastien Lemieux
Volume: 2013
Year: 2013
Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis

Author(s): Mario Flores | Tzu-Hung Hsiao | Yu-Chiao Chiu | Eric Y. Chuang | Yufei Huang | Yidong Chen
Volume: 2013
Year: 2013
Spectral Analysis on Time-Course Expression Data: Detecting Periodic Genes Using a Real-Valued Iterative Adaptive Approach

Author(s): Kwadwo S. Agyepong | Fang-Han Hsu | Edward R. Dougherty | Erchin Serpedin
Volume: 2013
Year: 2013
Identification of Robust Pathway Markers for Cancer through Rank-Based Pathway Activity Inference

Author(s): Navadon Khunlertgit | Byung-Jun Yoon
Volume: 2013
Year: 2013
Using Protein Clusters from Whole Proteomes to Construct and Augment a Dendrogram

Author(s): Yunyun Zhou | Douglas R. Call | Shira L. Broschat
Volume: 2013
Year: 2013
Solving the 0/1 Knapsack Problem by a Biomolecular DNA Computer

Author(s): Hassan Taghipour | Mahdi Rezaei | Heydar Ali Esmaili
Volume: 2013
Year: 2013
An Overview of the Statistical Methods Used for Inferring Gene Regulatory Networks and Protein-Protein Interaction Networks

Author(s): Amina Noor | Erchin Serpedin | Mohamed Nounou | Hazem Nounou | Nady Mohamed | Lotfi Chouchane
Volume: 2013
Year: 2013
Reverse Engineering Sparse Gene Regulatory Networks Using Cubature Kalman Filter and Compressed Sensing

Author(s): Amina Noor | Erchin Serpedin | Mohamed Nounou | Hazem Nounou
Volume: 2013
Year: 2013
Efficient Serial and Parallel Algorithms for Selection of Unique Oligos in EST Databases

Author(s): Manrique Mata-Montero | Nabil Shalaby | Bradley Sheppard
Volume: 2013
Year: 2013
Computational and Statistical Approaches for Modeling of Proteomic and Genomic Networks

Author(s): Mohamed Nounou | Hazem Nounou | Erchin Serpedin | Aniruddha Datta | Yufei Huang
Volume: 2013
Year: 2013
A Multilevel Gamma-Clustering Layout Algorithm for Visualization of Biological Networks

Author(s): Tomas Hruz | Markus Wyss | Christoph Lucas | Oliver Laule | Peter von Rohr | Philip Zimmermann | Stefan Bleuler
Volume: 2013
Year: 2013
Affiliate Program      Why do you need a reservation system?