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Theoretical Biology and Medical Modelling

ISSN: 1742--4682
Publisher: BioMed Central


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Review and application of group theory to molecular systems biology

Author(s): Rietman Edward | Karp Robert | Tuszynski Jack
Volume: 8
Issue: 1
Year: 2011
Interactomes, manufacturomes and relational biology: analogies between systems biology and manufacturing systems

Author(s): Rietman Edward | Colt John | Tuszynski Jack
Volume: 8
Issue: 1
Year: 2011
A biochemical hypothesis on the formation of fingerprints using a turing patterns approach

Author(s): Garzón-Alvarado Diego | Ramírez Martinez Angelica
Volume: 8
Issue: 1
Year: 2011
The function of 7D-cadherins: a mathematical model predicts physiological importance for water transport through simple epithelia

Author(s): Ahl Mareike | Weth Agnes | Walcher Sebastian | Baumgartner Werner
Volume: 8
Issue: 1
Year: 2011
Self-organization of developing embryo using scale-invariant approach

Author(s): Tiraihi Ali | Tiraihi Mujtaba | Tiraihi Taki
Volume: 8
Issue: 1
Year: 2011
Can molecular cell biology explain chromosome motions?

Author(s): Shain Daniel | Gagliardi L
Volume: 8
Issue: 1
Year: 2011
Modeling left ventricular diastolic dysfunction: classification and key indicators

Author(s): Luo Chuan | Ramachandran Deepa | Ware David | Ma Tony | Clark John
Volume: 8
Issue: 1
Year: 2011
A simple intravenous glucose tolerance test for assessment of insulin sensitivity

Author(s): Hahn Robert | Ljunggren Stefan | Larsen Filip | Nyström Thomas
Volume: 8
Issue: 1
Year: 2011
Improving the prediction of yeast protein function using weighted protein-protein interactions

Author(s): Ahmed Khaled | Saloma Nahed | Kadah Yasser
Volume: 8
Issue: 1
Year: 2011
Safe uses of Hill's model: an exact comparison with the Adair-Klotz model

Author(s): Konkoli Zoran
Volume: 8
Issue: 1
Year: 2011
The effects of low-impact mutations in digital organisms

Author(s): Nelson Chase | Sanford John
Volume: 8
Issue: 1
Year: 2011
Insights gained from the reverse engineering of gene networks in keloid fibroblasts

Author(s): Ooi Brandon | Phan Toan
Volume: 8
Issue: 1
Year: 2011
Proof-of-principle investigation of an algorithmic model of adenosine-mediated angiogenesis

Author(s): Azuaje Francisco | Léonard Frédérique | Rolland-Turner Magali | Devaux Yvan | Wagner Daniel
Volume: 8
Issue: 1
Year: 2011
A mathematical model of quorum sensing regulated EPS production in biofilm communities

Author(s): Frederick Mallory | Kuttler Christina | Hense Burkhard | Eberl Hermann
Volume: 8
Issue: 1
Year: 2011
Disruption of cell wall fatty acid biosynthesis in Mycobacterium tuberculosis using a graph theoretic approach

Author(s): Baths Veeky | Roy Utpal | Singh Tarkeshwar
Volume: 8
Issue: 1
Year: 2011
Formation of translational risk score based on correlation coefficients as an alternative to Cox regression models for predicting outcome in patients with NSCLC

Author(s): Kössler Wolfgang | Fiebeler Anette | Willms Arnulf | ElAidi Tina | Klosterhalfen Bernd | Klinge Uwe
Volume: 8
Issue: 1
Year: 2011
Modelling ultrasound-induced mild hyperthermia of hyperplasia in vascular grafts

Author(s): Brinton Mark | Stewart Russell | Cheung Alfred | Christensen Douglas | Shiu Yan-Ting
Volume: 8
Issue: 1
Year: 2011
Availability of a pediatric trauma center in a disaster surge decreases triage time of the pediatric surge population: a population kinetics model

Author(s): Barthel Erik | Pierce James | Goodhue Catherine | Ford Henri | Grikscheit Tracy | Upperman Jeffrey
Volume: 8
Issue: 1
Year: 2011
Relational grounding facilitates development of scientifically useful multiscale models

Author(s): Hunt C Anthony | Ropella Glen | Lam Tai | Gewitz Andrew
Volume: 8
Issue: 1
Year: 2011
Modeling invasion of metastasizing cancer cells to bone marrow utilizing ecological principles

Author(s): Chen Kun-Wan | Pienta Kenneth
Volume: 8
Issue: 1
Year: 2011
A network model for biofilm development in Escherichia coli K-12

Author(s): Shalá Andrew | Restrepo Silvia | González Barrios Andrés
Volume: 8
Issue: 1
Year: 2011
A reaction-diffusion model of the receptor-toxin-antibody interaction

Author(s): Skakauskas Vladas | Katauskis Pranas | Skvortsov Alex
Volume: 8
Issue: 1
Year: 2011
Mathematical model insights into arsenic detoxification

Author(s): Lawley Sean | Cinderella Molly | Hall Megan | Gamble Mary | Nijhout H Frederik | Reed Michael
Volume: 8
Issue: 1
Year: 2011
Defining the buffering process by a triprotic acid without relying on stewart-electroneutrality considerations

Author(s): Nguyen Minhtri | Kao Liyo | Kurtz Ira
Volume: 8
Issue: 1
Year: 2011
Cancer as a dynamical phase transition

Author(s): Davies Paul | Demetrius Lloyd | Tuszynski Jack
Volume: 8
Issue: 1
Year: 2011
Does codon bias have an evolutionary origin?

Author(s): Biro Jan
Volume: 5
Issue: 1
Year: 2008
Probability landscapes for integrative genomics

Author(s): Lesne Annick | Benecke Arndt
Volume: 5
Issue: 1
Year: 2008
A mathematical model of glutathione metabolism

Author(s): Reed Michael | Thomas Rachel | Pavisic Jovana | James S Jill | Ulrich Cornelia | Nijhout H Frederik
Volume: 5
Issue: 1
Year: 2008
Sampling and sensitivity analyses tools (SaSAT) for computational modelling

Author(s): Hoare Alexander | Regan David | Wilson David
Volume: 5
Issue: 1
Year: 2008
Functional mapping imprinted quantitative trait loci underlying developmental characteristics

Author(s): Cui Yuehua | Li Shaoyu | Li Gengxin
Volume: 5
Issue: 1
Year: 2008
Simulating non-small cell lung cancer with a multiscale agent-based model

Author(s): Wang Zhihui | Zhang Le | Sagotsky Jonathan | Deisboeck Thomas
Volume: 4
Issue: 1
Year: 2007
A mathematical model of venous neointimal hyperplasia formation

Author(s): Budu-Grajdeanu Paula | Schugart Richard | Friedman Avner | Valentine Christopher | Agarwal Anil | Rovin Brad
Volume: 5
Issue: 1
Year: 2008
Optimization of biotechnological systems through geometric programming

Author(s): Marin-Sanguino Alberto | Voit Eberhard | Gonzalez-Alcon Carlos | Torres Nestor
Volume: 4
Issue: 1
Year: 2007
Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia

Author(s): Çakιr Tunahan | Alsan Selma | Saybaşιlι Hale | Akιn Ata | Ülgen Kutlu
Volume: 4
Issue: 1
Year: 2007
Measuring the functional sequence complexity of proteins

Author(s): Durston Kirk | Chiu David | Abel David | Trevors Jack
Volume: 4
Issue: 1
Year: 2007
Simulation of propofol anaesthesia for intracranial decompression using brain hypothermia treatment

Author(s): Gaohua Lu | Kimura Hidenori
Volume: 4
Issue: 1
Year: 2007
The Basic Immune Simulator: An agent-based model to study the interactions between innate and adaptive immunity

Author(s): Folcik Virginia | An Gary | Orosz Charles
Volume: 4
Issue: 1
Year: 2007
Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift

Author(s): Alvarez-Vasquez Fernando | Sims Kellie | Voit Eberhard | Hannun Yusuf
Volume: 4
Issue: 1
Year: 2007
Regular mosaic pattern development: A study of the interplay between lateral inhibition, apoptosis and differential adhesion

Author(s): Podgorski Gregory | Bansal Mayank | Flann Nicholas
Volume: 4
Issue: 1
Year: 2007
Inflammation: a way to understanding the evolution of portal hypertension

Author(s): Aller María-Angeles | Arias Jorge-Luis | Cruz Arturo | Arias Jaime
Volume: 4
Issue: 1
Year: 2007
Analysis of arterial intimal hyperplasia: review and hypothesis

Author(s): Subbotin Vladimir
Volume: 4
Issue: 1
Year: 2007
Cable properties and propagation velocity in a long single chain of simulated myocardial cells

Author(s): Ramasamy Lakshminarayanan | Sperelakis Nicholas
Volume: 4
Issue: 1
Year: 2007
A continuum mathematical model of endothelial layer maintenance and senescence

Author(s): Wang Ying | Aguda Baltazar | Friedman Avner
Volume: 4
Issue: 1
Year: 2007
Nonequilibrium thermodynamics and energy efficiency in weight loss diets

Author(s): Feinman Richard | Fine Eugene
Volume: 4
Issue: 1
Year: 2007
A general framework for quantifying the effects of DNA repair inhibitors on radiation sensitivity as a function of dose

Author(s): Chalmers Anthony | Bentzen Soeren | Buffa Francesca
Volume: 4
Issue: 1
Year: 2007
Numerical modelling of label-structured cell population growth using CFSE distribution data

Author(s): Luzyanina Tatyana | Roose Dirk | Schenkel Tim | Sester Martina | Ehl Stephan | Meyerhans Andreas | Bocharov Gennady
Volume: 4
Issue: 1
Year: 2007
Modeling the effect of levothyroxine therapy on bone mass density in postmenopausal women: a different approach leads to new inference

Author(s): Mohammadi Babak | Haghpanah Vahid | Tavangar Seyed | Larijani Bagher
Volume: 4
Issue: 1
Year: 2007
Distinguishing enzymes using metabolome data for the hybrid dynamic/static method

Author(s): Ishii Nobuyoshi | Nakayama Yoichi | Tomita Masaru
Volume: 4
Issue: 1
Year: 2007
Anomalous ion diffusion within skeletal muscle transverse tubule networks

Author(s): Shorten Paul | Soboleva Tanya
Volume: 4
Issue: 1
Year: 2007
A mathematical model separates quantitatively the cytostatic and cytotoxic effects of a HER2 tyrosine kinase inhibitor

Author(s): Hinow Peter | Wang Shizhen | Arteaga Carlos | Webb Glenn
Volume: 4
Issue: 1
Year: 2007
Dynamically simulating the interaction of midazolam and the CYP3A4 inhibitor itraconazole using individual coupled whole-body physiologically-based pharmacokinetic (WB-PBPK) models

Author(s): Vossen Michaela | Sevestre Michael | Niederalt Christoph | Jang In-Jin | Willmann Stefan | Edginton Andrea
Volume: 4
Issue: 1
Year: 2007
Collective consciousness and its pathologies: Understanding the failure of AIDS control and treatment in the United States

Author(s): Wallace Rodrick | Fullilove Mindy | Fullilove Robert | Wallace Deborah
Volume: 4
Issue: 1
Year: 2007
Inclusion of the glucocorticoid receptor in a hypothalamic pituitary adrenal axis model reveals bistability

Author(s): Gupta Shakti | Aslakson Eric | Gurbaxani Brian | Vernon Suzanne
Volume: 4
Issue: 1
Year: 2007
A mathematical model for the adenylosuccinate synthetase reaction involved in purine biosynthesis

Author(s): Oshchepkova-Nedosekina Evgeniya | Likhoshvai Vitalii
Volume: 4
Issue: 1
Year: 2007
A stochastic model for circadian rhythms from coupled ultradian oscillators

Author(s): Edwards Roderick | Gibson Richard | Illner Reinhard | Paetkau Verner
Volume: 4
Issue: 1
Year: 2007
Bringing metabolic networks to life: convenience rate law and thermodynamic constraints

Author(s): Liebermeister Wolfram | Klipp Edda
Volume: 3
Issue: 1
Year: 2006
Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data

Author(s): Liebermeister Wolfram | Klipp Edda
Volume: 3
Issue: 1
Year: 2006
The biological sense of cancer: a hypothesis

Author(s): Ruggiero Raúl | Bustuoabad Oscar
Volume: 3
Issue: 1
Year: 2006
The mechanism for stochastic resonance enhancement of mammalian auditory information processing

Author(s): Hong Dawei | Martin Joseph | Saidel William
Volume: 3
Issue: 1
Year: 2006
In silico experimentation with a model of hepatic mitochondrial folate metabolism

Author(s): Nijhout H Frederik | Reed Michael | Lam Shi-Ling | Shane Barry | Gregory Jesse | Ulrich Cornelia
Volume: 3
Issue: 1
Year: 2006
Identification of biomolecule mass transport and binding rate parameters in living cells by inverse modeling

Author(s): Sadegh Zadeh Kouroush | Montas Hubert | Shirmohammadi Adel
Volume: 3
Issue: 1
Year: 2006
Cancer initiation and progression: an unsimplifiable complexity

Author(s): Grizzi Fabio | Di Ieva Antonio | Russo Carlo | Frezza Eldo | Cobos Everardo | Muzzio Pier | Chiriva-Internati Maurizio
Volume: 3
Issue: 1
Year: 2006
Pulsatile blood flow, shear force, energy dissipation and Murray's Law

Author(s): Painter Page | Edén Patrik | Bengtsson Hans-Uno
Volume: 3
Issue: 1
Year: 2006
CapZ-lipid membrane interactions: a computer analysis

Author(s): Smith James | Diez Gerold | Klemm Anna | Schewkunow Vitali | Goldmann Wolfgang
Volume: 3
Issue: 1
Year: 2006
An object simulation model for modeling hypothetical disease epidemics – EpiFlex

Author(s): Hanley Brian
Volume: 3
Issue: 1
Year: 2006
A statistical method for predicting splice variants between two groups of samples using GeneChip® expression array data

Author(s): Fan Wenhong | Khalid Najma | Hallahan Andrew | Olson James | Zhao Lue
Volume: 3
Issue: 1
Year: 2006
Protein-lipid interactions: correlation of a predictive algorithm for lipid-binding sites with three-dimensional structural data

Author(s): Scott David | Diez Gerold | Goldmann Wolfgang
Volume: 3
Issue: 1
Year: 2006
Stochastic modeling of oligodendrocyte generation in cell culture: model validation with time-lapse data

Author(s): Hyrien Ollivier | Ambeskovic Ibro | Mayer-Proschel Margot | Noble Mark | Yakovlev Andrei
Volume: 3
Issue: 1
Year: 2006
Explaining individual variation in patterns of mass loss in breeding birds

Author(s): Rands Sean | Cuthill Innes | Houston Alasdair
Volume: 3
Issue: 1
Year: 2006
Binary gene induction and protein expression in individual cells

Author(s): Zhang Qiang | Andersen Melvin | Conolly Rory
Volume: 3
Issue: 1
Year: 2006
Computer simulation analysis of normal and abnormal development of the mammalian diaphragm

Author(s): Fisher Jason | Bodenstein Lawrence
Volume: 3
Issue: 1
Year: 2006
A method for the generation of standardized qualitative dynamical systems of regulatory networks

Author(s): Mendoza Luis | Xenarios Ioannis
Volume: 3
Issue: 1
Year: 2006
Effect of transverse gap-junction channels on transverse propagation in an enlarged PSpice model of cardiac muscle

Author(s): Ramasamy Lakshminarayanan | Sperelakis Nicholas
Volume: 3
Issue: 1
Year: 2006
Identification of metabolic system parameters using global optimization methods

Author(s): Polisetty Pradeep | Voit Eberhard | Gatzke Edward
Volume: 3
Issue: 1
Year: 2006
A model for generating circadian rhythm by coupling ultradian oscillators

Author(s): Paetkau Verner | Edwards Roderick | Illner Reinhard
Volume: 3
Issue: 1
Year: 2006
Number of active transcription factor binding sites is essential for the Hes7 oscillator

Author(s): Zeiser Stefan | Liebscher H Volkmar | Tiedemann Hendrik | Rubio-Aliaga Isabel | Przemeck Gerhard | de Angelis Martin | Winkler Gerhard
Volume: 3
Issue: 1
Year: 2006
Developing a realistic sexual network model of chlamydia transmission in Britain

Author(s): Turner Katherine | Adams Elisabeth | Gay Nigel | Ghani Azra | Mercer Catherine | Edmunds W John
Volume: 3
Issue: 1
Year: 2006
Memory in astrocytes: a hypothesis

Author(s): Caudle Robert
Volume: 3
Issue: 1
Year: 2006
Common angiotensin receptor blockers may directly modulate the immune system via VDR, PPAR and CCR2b

Author(s): Marshall Trevor | Lee Robert | Marshall Frances
Volume: 3
Issue: 1
Year: 2006
Neurogenetic interactions and aberrant behavioral co-morbidity of attention deficit hyperactivity disorder (ADHD): dispelling myths

Author(s): Comings David | Chen Thomas | Blum Kenneth | Mengucci Julie | Blum Seth | Meshkin Brian
Volume: 2
Issue: 1
Year: 2005
Repolarization of the action potential enabled by Na+ channel deactivation in PSpice simulation of cardiac muscle propagation

Author(s): Ramasamy Lakshminarayanan | Sperelakis Nicholas
Volume: 2
Issue: 1
Year: 2005
Supply-demand balance in outward-directed networks and Kleiber's law

Author(s): Painter Page
Volume: 2
Issue: 1
Year: 2005
Analysis of variation of amplitudes in cell cycle gene expression

Author(s): Liu Delong | Gaido Kevin | Wolfinger Russ
Volume: 2
Issue: 1
Year: 2005
Hybrid dynamic/static method for large-scale simulation of metabolism

Author(s): Yugi Katsuyuki | Nakayama Yoichi | Kinoshita Ayako | Tomita Masaru
Volume: 2
Issue: 1
Year: 2005
Boundary effects influence velocity of transverse propagation of simulated cardiac action potentials

Author(s): Sperelakis Nicholas | Kalloor Bijoy | Ramasamy Lakshminarayanan
Volume: 2
Issue: 1
Year: 2005
On the number of founding germ cells in humans

Author(s): Zheng Chang-Jiang | Luebeck E Georg | Byers Breck | Moolgavkar Suresh
Volume: 2
Issue: 1
Year: 2005
Possible Cis-acting signal that could be involved in the localization of different mRNAs in neuronal axons

Author(s): Aranda-Abreu Gonzalo | Hernández Ma Elena | Soto Abraham | Manzo Jorge
Volume: 2
Issue: 1
Year: 2005
Vasculature deprivation – induced osteonecrosis of the rat femoral head as a model for therapeutic trials

Author(s): Bejar Jacob | Peled Eli | Boss Jochanan
Volume: 2
Issue: 1
Year: 2005
The ups and downs of biological timers

Author(s): Rappaport Noa | Winter Shay | Barkai Naama
Volume: 2
Issue: 1
Year: 2005
Statistical distribution of blood serotonin as a predictor of early autistic brain abnormalities

Author(s): Janušonis Skirmantas
Volume: 2
Issue: 1
Year: 2005
Modelling of oedemous limbs and venous ulcers using partial differential equations

Author(s): Ugail Hassan | Wilson Michael
Volume: 2
Issue: 1
Year: 2005
Identification and isolation of embryonic stem cells in reproductive endocrinology: theoretical protocols for conservation of human embryos derived from in vitro fertilization

Author(s): Sills Eric | Takeuchi Takumi | Tanaka Noriko | Neri Queenie | Palermo Gianpiero
Volume: 2
Issue: 1
Year: 2005
Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach

Author(s): Boulesteix Anne-Laure | Strimmer Korbinian
Volume: 2
Issue: 1
Year: 2005
The complexity of anatomical systems

Author(s): Grizzi Fabio | Chiriva-Internati Maurizio
Volume: 2
Issue: 1
Year: 2005
Promoter addresses: revelations from oligonucleotide profiling applied to the Escherichia coli genome

Author(s): Sivaraman Karthikeyan | Seshasayee Aswin Sai Narain | Swaminathan Krishnakumar | Muthukumaran Geetha | Pennathur Gautam
Volume: 2
Issue: 1
Year: 2005
A new journal – "Theoretical Biology and Medical Modelling"

Author(s): Wheatley Denys
Volume: 2
Issue: 1
Year: 2005
Dynamic simulation of red blood cell metabolism and its application to the analysis of a pathological condition

Author(s): Nakayama Yoichi | Kinoshita Ayako | Tomita Masaru
Volume: 2
Issue: 1
Year: 2005
The quantitation of buffering action I. A formal & general approach

Author(s): Schmitt Bernhard
Volume: 2
Issue: 1
Year: 2005
The quantitation of buffering action II. Applications of the formal & general approach

Author(s): Schmitt Bernhard
Volume: 2
Issue: 1
Year: 2005
Volume-based non-continuum modeling of bone functional adaptation

Author(s): Wang Zhengyuan | Mondry Adrian
Volume: 2
Issue: 1
Year: 2005
Propagated repolarization of simulated action potentials in cardiac muscle and smooth muscle

Author(s): Sperelakis Nicholas | Ramasamy Lakshminarayanan | Kalloor Bijoy
Volume: 2
Issue: 1
Year: 2005
Human embryonal epithelial cells of the developing small intestinal crypts can express the Hodgkin-cell associated antigen Ki-1 (CD30) in spontaneous abortions during the first trimester of gestation

Author(s): Tamiolakis Demetrio | Venizelos John | Lambropoulou Maria | Nikolaidou Silva | Bolioti Sophia | Tsiapali Maria | Verettas Dionysios | Tsikouras Panagiotis | Chatzimichail Athanasios | Papadopoulos Nikolas
Volume: 2
Issue: 1
Year: 2005
Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

Author(s): Shelest Ekaterina | Wingender Edgar
Volume: 2
Issue: 1
Year: 2005
Size control in growing yeast and mammalian cells

Author(s): Sveiczer Akos | Novak Bela | Mitchison J Murdoch
Volume: 1
Issue: 1
Year: 2004
Priming nonlinear searches for pathway identification

Author(s): Veflingstad Siren | Almeida Jonas | Voit Eberhard
Volume: 1
Issue: 1
Year: 2004
A rational treatment of Mendelian genetics

Author(s): Porteous John
Volume: 1
Issue: 1
Year: 2004
Module-based multiscale simulation of angiogenesis in skeletal muscle

Author(s): Liu Gang | Qutub Amina | Vempati Prakash | Mac Gabhann Feilim | Popel Aleksander
Volume: 8
Issue: 1
Year: 2011
Using an agent-based model to analyze the dynamic communication network of the immune response

Author(s): Folcik Virginia | Broderick Gordon | Mohan Shunmugam | Block Brian | Ekbote Chirantan | Doolittle John | Khoury Marc | Davis Luke | Marsh Clay
Volume: 8
Issue: 1
Year: 2011
Theoretical basis to measure the impact of short-lasting control of an infectious disease on the epidemic peak

Author(s): Omori Ryosuke | Nishiura Hiroshi
Volume: 8
Issue: 1
Year: 2011
A danger of low copy numbers for inferring incorrect cooperativity degree

Author(s): Konkoli Zoran
Volume: 7
Issue: 1
Year: 2010
Modeling CICR in rat ventricular myocytes: voltage clamp studies

Author(s): Krishna Abhilash | Sun Liang | Valderrábano Miguel | Palade Philip | Clark John
Volume: 7
Issue: 1
Year: 2010
ChIP-PaM: an algorithm to identify protein-DNA interaction using ChIP-Seq data

Author(s): Wu Song | Wang Jianmin | Zhao Wei | Pounds Stanley | Cheng Cheng
Volume: 7
Issue: 1
Year: 2010
Glucose sensing in the pancreatic beta cell: a computational systems analysis

Author(s): Fridlyand Leonid | Philipson Louis
Volume: 7
Issue: 1
Year: 2010
Evaluation of the collaborative network of highly correlating skin proteins and its change following treatment with glucocorticoids

Author(s): Klinge Uwe | Farman Nicolette | Fiebeler Anette
Volume: 7
Issue: 1
Year: 2010
Networked buffering: a basic mechanism for distributed robustness in complex adaptive systems

Author(s): Whitacre James | Bender Axel
Volume: 7
Issue: 1
Year: 2010
A generalized physiologically-based toxicokinetic modeling system for chemical mixtures containing metals

Author(s): Sasso Alan | Isukapalli Sastry | Georgopoulos Panos
Volume: 7
Issue: 1
Year: 2010
Order without design

Author(s): Kurakin Alexei
Volume: 7
Issue: 1
Year: 2010
Mathematical framework for human SLE Nephritis: disease dynamics and urine biomarkers

Author(s): Budu-Grajdeanu Paula | Schugart Richard | Friedman Avner | Birmingham Daniel | Rovin Brad
Volume: 7
Issue: 1
Year: 2010
Theoretical analysis of the mechanisms of a gender differentiation in the propensity for orthostatic intolerance after spaceflight

Author(s): Summers Richard | Platts Steven | Myers Jerry | Coleman Thomas
Volume: 7
Issue: 1
Year: 2010
Propagation of kinetic uncertainties through a canonical topology of the TLR4 signaling network in different regions of biochemical reaction space

Author(s): Gutiérrez Jayson | St Laurent Georges | Urcuqui-Inchima Silvio
Volume: 7
Issue: 1
Year: 2010
A thalamic reticular networking model of consciousness

Author(s): Min Byoung-Kyong
Volume: 7
Issue: 1
Year: 2010
Advantages of the single delay model for the assessment of insulin sensitivity from the intravenous glucose tolerance test

Author(s): Panunzi Simona | De Gaetano Andrea | Mingrone Geltrude
Volume: 7
Issue: 1
Year: 2010
Pros and cons of estimating the reproduction number from early epidemic growth rate of influenza A (H1N1) 2009

Author(s): Nishiura Hiroshi | Chowell Gerardo | Safan Muntaser | Castillo-Chavez Carlos
Volume: 7
Issue: 1
Year: 2010
On the general theory of the origins of retroviruses

Author(s): Wayengera Misaki
Volume: 7
Issue: 1
Year: 2010
A modeling and simulation study of siderophore mediated antagonism in dual-species biofilms

Author(s): Eberl Hermann | Collinson Shannon
Volume: 6
Issue: 1
Year: 2009
A mathematical model of brain glucose homeostasis

Author(s): Gaohua Lu | Kimura Hidenori
Volume: 6
Issue: 1
Year: 2009
A model analysis of static stress in the vestibular membranes

Author(s): Pender Daniel
Volume: 6
Issue: 1
Year: 2009
Comparative modeling of DNA and RNA polymerases from Moniliophthora perniciosa mitochondrial plasmid

Author(s): Andrade Bruno | Taranto Alex | Góes-Neto Aristóteles | Duarte Angelo
Volume: 6
Issue: 1
Year: 2009
The terrestrial evolution of metabolism and life – by the numbers

Author(s): O'Kelly Gregory
Volume: 6
Issue: 1
Year: 2009
Homeostatic mechanisms in dopamine synthesis and release: a mathematical model

Author(s): Best Janet | Nijhout H Frederik | Reed Michael
Volume: 6
Issue: 1
Year: 2009
In silico evidence for the species-specific conservation of mosquito retroposons: implications as a molecular biomarker

Author(s): Byarugaba Wilson | Kajumbula Henry | Wayengera Misaki
Volume: 6
Issue: 1
Year: 2009
A tumor cord model for Doxorubicin delivery and dose optimization in solid tumors

Author(s): Eikenberry Steffen
Volume: 6
Issue: 1
Year: 2009
Using a human cardiovascular-respiratory model to characterize cardiac tamponade and pulsus paradoxus

Author(s): Ramachandran Deepa | Luo Chuan | Ma Tony | Clark John
Volume: 6
Issue: 1
Year: 2009
Ranking candidate genes in rat models of type 2 diabetes

Author(s): Andersson Lars | Petersen Greta | Ståhl Fredrik
Volume: 6
Issue: 1
Year: 2009
Models of epidemics: when contact repetition and clustering should be included

Author(s): Smieszek Timo | Fiebig Lena | Scholz Roland
Volume: 6
Issue: 1
Year: 2009
Extension of Murray's law using a non-Newtonian model of blood flow

Author(s): Revellin Rémi | Rousset François | Baud David | Bonjour Jocelyn
Volume: 6
Issue: 1
Year: 2009
Computational investigation of epithelial cell dynamic phenotype in vitro

Author(s): Kim Sean | Park Sunwoo | Mostov Keith | Debnath Jayanta | Hunt C Anthony
Volume: 6
Issue: 1
Year: 2009
Construction and analysis of a modular model of caspase activation in apoptosis

Author(s): Harrington Heather | Ho Kenneth | Ghosh Samik | Tung KC
Volume: 5
Issue: 1
Year: 2008
Assessing drug distribution in tissues expressing P-glycoprotein through physiologically based pharmacokinetic modeling: model structure and parameters determination

Author(s): Fenneteau Frédérique | Turgeon Jacques | Couture Lucie | Michaud Véronique | Li Jun | Nekka Fahima
Volume: 6
Issue: 1
Year: 2009
Binding of long-chain α-neurotoxin would stabilize the resting state of nAChR: A comparative study with α-conotoxin

Author(s): Nasiripourdori Adak | Ranjbar Bijan | Naderi-Manesh Hossein
Volume: 6
Issue: 1
Year: 2009
Mitochondrial concept of leukemogenesis: key role of oxygen-peroxide effects

Author(s): Lyu Boris | Ismailov Sanzhar | Ismailov Bolat | Lyu Marina
Volume: 5
Issue: 1
Year: 2008
Activation instead of blocking mesolimbic dopaminergic reward circuitry is a preferred modality in the long term treatment of reward deficiency syndrome (RDS): a commentary

Author(s): Blum Kenneth | Chen Amanda | Chen Thomas | Braverman Eric | Reinking Jeffrey | Blum Seth | Cassel Kimberly | Downs Bernard | Waite Roger | Williams Lonna | Prihoda Thomas | Kerner Mallory | Palomo Tomas | Comings David | Tung Howard | Rhoades Patrick | Oscar-Berman Marlene
Volume: 5
Issue: 1
Year: 2008
Analysis of novel geometry-independent method for dialysis access pressure-flow monitoring

Author(s): Weitzel William | Cotant Casey | Wen Zhijie | Biswas Rohan | Patel Prashant | Panduranga Harsha | Gianchandani Yogesh | Rubin Jonathan
Volume: 5
Issue: 1
Year: 2008
Feature context-dependency and complexity-reduction in probability landscapes for integrative genomics

Author(s): Lesne Annick | Benecke Arndt
Volume: 5
Issue: 1
Year: 2008
Extracting key information from historical data to quantify the transmission dynamics of smallpox

Author(s): Nishiura Hiroshi | Brockmann Stefan | Eichner Martin
Volume: 5
Issue: 1
Year: 2008
Utility of a single adjusting compartment: a novel methodology for whole body physiologically-based pharmacokinetic modelling

Author(s): Ando Hirotaka | Izawa Shigeru | Hori Wataru | Nakagawa Ippei
Volume: 5
Issue: 1
Year: 2008
Maximum likelihood estimation of reviewers' acumen in central review setting: categorical data

Author(s): Zhao Wei | Boyett James | Kocak Mehmet | Ellison David | Wu Yanan
Volume: 8
Issue: 1
Year: 2011
Population genetics of cancer cell clones: possible implications of cancer stem cells

Author(s): Naugler Christopher
Volume: 7
Issue: 1
Year: 2010
Assessing the effects of multiple infections and long latency in the dynamics of tuberculosis

Author(s): Yang Hyun | Raimundo Silvia
Volume: 7
Issue: 1
Year: 2010
Cancer immunotherapy by immunosuppression

Author(s): Prehn Richmond | Prehn Liisa
Volume: 7
Issue: 1
Year: 2010
How is the balance between protein synthesis and degradation achieved?

Author(s): Rothman Stephen
Volume: 7
Issue: 1
Year: 2010
Chemotherapy in conjoint aging-tumor systems: some simple models for addressing coupled aging-cancer dynamics

Author(s): Feizabadi Mitra | Witten Tarynn
Volume: 7
Issue: 1
Year: 2010
Stochasticity of flow through microcirculation as a regulator of oxygen delivery

Author(s): Kislukhin Viktor
Volume: 7
Issue: 1
Year: 2010
A statistical model for mapping morphological shape

Author(s): Fu Guifang | Berg Arthur | Das Kiranmoy | Li Jiahan | Li Runze | Wu Rongling
Volume: 7
Issue: 1
Year: 2010
Tracking tumor evolution via prostate-specific antigen: an individual post-operative study

Author(s): Erbudak Mehmet | Erzan Ayşe
Volume: 7
Issue: 1
Year: 2010
Complex life forms may arise from electrical processes

Author(s): Elson Edward
Volume: 7
Issue: 1
Year: 2010
Cancer proliferation and therapy: the Warburg effect and quantum metabolism

Author(s): Demetrius Lloyd | Coy Johannes | Tuszynski Jack
Volume: 7
Issue: 1
Year: 2010
Hypofractionated radiotherapy has the potential for second cancer reduction

Author(s): Schneider Uwe | Besserer Jürgen | Mack Andreas
Volume: 7
Issue: 1
Year: 2010
Editorial: hypotheses about protein folding - the proteomic code and wonderfolds

Author(s): Agutter Paul
Volume: 6
Issue: 1
Year: 2009
In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O157:H7 for oral immunogenic applications

Author(s): Amani Jafar | Mousavi S Latif | Rafati Sima | Salmanian Ali
Volume: 6
Issue: 1
Year: 2009
The Universal Plausibility Metric (UPM) & Principle (UPP)

Author(s): Abel David
Volume: 6
Issue: 1
Year: 2009
Correction: Utility of a single adjusting compartment: a novel methodology for whole body physiologically-based pharmacokinetic modelling

Author(s): Ando Hirotaka | Izawa Shigeru | Hori Wataru | Nakagawa Ippei
Volume: 6
Issue: 1
Year: 2009
Computational models in plant-pathogen interactions: the case of Phytophthora infestans

Author(s): Pinzón Andrés | Barreto Emiliano | Bernal Adriana | Achenie Luke | González Barrios Andres | Isea Raúl | Restrepo Silvia
Volume: 6
Issue: 1
Year: 2009
Binding site of ABC transporter homology models confirmed by ABCB1 crystal structure

Author(s): Ravna Aina | Sylte Ingebrigt | Sager Georg
Volume: 6
Issue: 1
Year: 2009
Formal kinetics of H1N1 epidemic

Author(s): Gurevich Konstantin
Volume: 6
Issue: 1
Year: 2009
Scale-free flow of life: on the biology, economics, and physics of the cell

Author(s): Kurakin Alexei
Volume: 6
Issue: 1
Year: 2009
Heterogeneity in multistage carcinogenesis and mixture modeling

Author(s): Gsteiger Sandro | Morgenthaler Stephan
Volume: 5
Issue: 1
Year: 2008
Origin of the blood hyperserotonemia of autism

Author(s): Janušonis Skirmantas
Volume: 5
Issue: 1
Year: 2008
The Peter Pan paradigm

Author(s): Cohen J Craig | Larson Janet
Volume: 5
Issue: 1
Year: 2008
The Proteomic Code: a molecular recognition code for proteins

Author(s): Biro Jan
Volume: 4
Issue: 1
Year: 2007
Hypertabastic survival model

Author(s): Tabatabai Mohammad | Bursac Zoran | Williams David | Singh Karan
Volume: 4
Issue: 1
Year: 2007
Variance in multiplex suspension array assays: microsphere size variation impact

Author(s): Hanley Brian | Xing Li | Cheng R Holland
Volume: 4
Issue: 1
Year: 2007
Can a single model explain both breast cancer and prostate cancer?

Author(s): Friedman A Edward
Volume: 4
Issue: 1
Year: 2007
The allosteric modulation of lipases and its possible biological relevance

Author(s): Köhler Jens | Wünsch Bernhard
Volume: 4
Issue: 1
Year: 2007
Could increased axial wall stress be responsible for the development of atheroma in the proximal segment of myocardial bridges?

Author(s): Doriot Pierre-André | Dorsaz Pierre-André | Noble Jacques
Volume: 4
Issue: 1
Year: 2007
Lens stem cells may reside outside the lens capsule: an hypothesis

Author(s): Remington Susann | Meyer Rita
Volume: 4
Issue: 1
Year: 2007
Theoretical size distribution of fossil taxa: analysis of a null model

Author(s): Reed William | Hughes Barry
Volume: 4
Issue: 1
Year: 2007
A computational model for functional mapping of genes that regulate intra-cellular circadian rhythms

Author(s): Liu Tian | Liu Xueli | Chen Yunmei | Wu Rongling
Volume: 4
Issue: 1
Year: 2007
Biological effects of deuteronation: ATP synthase as an example

Author(s): Olgun Abdullah
Volume: 4
Issue: 1
Year: 2007
Morphological instability and cancer invasion: a 'splashing water drop' analogy

Author(s): Guiot Caterina | Delsanto Pier | Deisboeck Thomas
Volume: 4
Issue: 1
Year: 2007
Bayesian profiling of molecular signatures to predict event times

Author(s): Zhang Dabao | Zhang Min
Volume: 4
Issue: 1
Year: 2007
Immunostimulation and Immunoinhibition of Premalignant Lesions

Author(s): Prehn Richmond
Volume: 4
Issue: 1
Year: 2007
Redox-mediated bypass of restriction point via skipping of G1pm

Author(s): Hoffman Arnold | Greene James | Spetner Lee | Burke Michael
Volume: 3
Issue: 1
Year: 2006
The paradoxical effects of splenectomy on tumor growth

Author(s): Prehn Richmond
Volume: 3
Issue: 1
Year: 2006
Free radical theory of autoimmunity*

Author(s): Kannan Subburaj
Volume: 3
Issue: 1
Year: 2006
Fractal parameters and vascular networks: facts & artifacts

Author(s): Mancardi Daniele | Varetto Gianfranco | Bucci Enrico | Maniero Fabrizio | Guiot Caterina
Volume: 5
Issue: 1
Year: 2008
A statistical model for the identification of genes governing the incidence of cancer with age

Author(s): Das Kiranmoy | Wu Rongling
Volume: 5
Issue: 1
Year: 2008
Scaling, growth and cyclicity in biology: a new computational approach

Author(s): Delsanto Pier | Gliozzi Antonio | Guiot Caterina
Volume: 5
Issue: 1
Year: 2008
Does reservoir host mortality enhance transmission of West Nile virus?

Author(s): Foppa Ivo | Spielman Andrew
Volume: 4
Issue: 1
Year: 2007
Directed cell migration in the presence of obstacles

Author(s): Grima Ramon
Volume: 4
Issue: 1
Year: 2007
Key transmission parameters of an institutional outbreak during the 1918 influenza pandemic estimated by mathematical modelling

Author(s): Sertsou Gabriel | Wilson Nick | Baker Michael | Nelson Peter | Roberts Mick
Volume: 3
Issue: 1
Year: 2006
A simplified method for power-law modelling of metabolic pathways from time-course data and steady-state flux profiles

Author(s): Kitayama Tomoya | Kinoshita Ayako | Sugimoto Masahiro | Nakayama Yoichi | Tomita Masaru
Volume: 3
Issue: 1
Year: 2006
A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies

Author(s): Ribba Benjamin | Colin Thierry | Schnell Santiago
Volume: 3
Issue: 1
Year: 2006
An immune reaction may be necessary for cancer development

Author(s): Prehn Richmond
Volume: 3
Issue: 1
Year: 2006
Sepsis progression and outcome: a dynamical model

Author(s): Zuev Sergey | Kingsmore Stephen | Gessler Damian
Volume: 3
Issue: 1
Year: 2006
A mathematical model of the euglycemic hyperinsulinemic clamp

Author(s): Picchini Umberto | De Gaetano Andrea | Panunzi Simona | Ditlevsen Susanne | Mingrone Geltrude
Volume: 2
Issue: 1
Year: 2005
Volume of the effect compartment in simulations of neuromuscular block

Author(s): Nigrovic Vladimir | Proost Johannes | Amann Anton | Bhatt Shashi
Volume: 2
Issue: 1
Year: 2005
Uncertainty principle of genetic information in a living cell

Author(s): Strippoli Pierluigi | Canaider Silvia | Noferini Francesco | D'Addabbo Pietro | Vitale Lorenza | Facchin Federica | Lenzi Luca | Casadei Raffaella | Carinci Paolo | Zannotti Maria | Frabetti Flavia
Volume: 2
Issue: 1
Year: 2005
Three subsets of sequence complexity and their relevance to biopolymeric information

Author(s): Abel David | Trevors Jack
Volume: 2
Issue: 1
Year: 2005
An ETP model (exclusion-tolerance-progression) for multi drug resistance

Author(s): Kannan Subburaj
Volume: 2
Issue: 1
Year: 2005
Breakdown of accommodation in nerve: a possible role for persistent sodium current

Author(s): Hennings Kristian | Arendt-Nielsen Lars | Andersen Ole
Volume: 2
Issue: 1
Year: 2005
A topological model of biofeedback based on catecholamine interactions

Author(s): Basak Tapas | Halder Suman | Kumar Madona | Sharma Renu | Midya Bijoylaxmi
Volume: 2
Issue: 1
Year: 2005
The Estradiol-Dihydrotestosterone model of prostate cancer

Author(s): Friedman A Edward
Volume: 2
Issue: 1
Year: 2005
High-Temperature unfolding of a trp-Cage mini-protein: a molecular dynamics simulation study

Author(s): Seshasayee Aswin Sai Narain
Volume: 2
Issue: 1
Year: 2005
Single cell studies of the cell cycle and some models

Author(s): Mitchison JM
Volume: 2
Issue: 1
Year: 2005
In vitro bioassay as a predictor of in vivo response

Author(s): Barnard Ross | Gurevich Konstantin
Volume: 2
Issue: 1
Year: 2005
Metabolic scaling: consensus or controversy?

Author(s): Agutter Paul | Wheatley Denys
Volume: 1
Issue: 1
Year: 2004
Application of methods of identifying receptor binding models and analysis of parameters

Author(s): Gurevich Konstantin
Volume: 1
Issue: 1
Year: 2004
A Global Workspace perspective on mental disorders

Author(s): Wallace Rodrick
Volume: 2
Issue: 1
Year: 2005
A comparative study of a theoretical neural net model with MEG data from epileptic patients and normal individuals

Author(s): Kotini A | Anninos P | Anastasiadis AN | Tamiolakis D
Volume: 2
Issue: 1
Year: 2005
Nucleic acid chaperons: a theory of an RNA-assisted protein folding

Author(s): Biro Jan
Volume: 2
Issue: 1
Year: 2005
Hyperbolastic growth models: theory and application

Author(s): Tabatabai Mohammad | Williams David | Bursac Zoran
Volume: 2
Issue: 1
Year: 2005
A mathematical model for LH release in response to continuous and pulsatile exposure of gonadotrophs to GnRH

Author(s): Washington Talitha | Blum J Joseph | Reed Michael | Conn P Michael
Volume: 1
Issue: 1
Year: 2004
Modeling the clonal heterogeneity of stem cells

Author(s): Tuck David | Miranker Willard
Volume: 7
Issue: 1
Year: 2010
A simple powerful bivariate test for two sample location problems in experimental and observational studies

Author(s): Tabesh Hamed | Ayatollahi S | Towhidi Mina
Volume: 7
Issue: 1
Year: 2010
Antimicrobial breakpoint estimation accounting for variability in pharmacokinetics

Author(s): Bi Goue | Li Jun | Nekka Fahima
Volume: 6
Issue: 1
Year: 2009
Immunologgical self-tolerance in allophenic and embryo-aggregated mice

Author(s): Prehn Richmond | Prehn Liisa
Volume: 7
Issue: 1
Year: 2010
Chromatid recommensuration after segmental duplication

Author(s): Jabbour Mark
Volume: 6
Issue: 1
Year: 2009
Optimization principles of dendritic structure

Author(s): Cuntz Hermann | Borst Alexander | Segev Idan
Volume: 4
Issue: 1
Year: 2007
Relating a calcium indicator signal to the unperturbed calcium concentration time-course

Author(s): Borst Alexander | Abarbanel Henry
Volume: 4
Issue: 1
Year: 2007
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