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Biology Direct

ISSN: 1745--6150
Publisher: BioMed Central


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Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Author(s): Makarova Kira | Aravind L | Wolf Yuri | Koonin Eugene
Volume: 6
Issue: 1
Year: 2011
CREST - a large and diverse superfamily of putative transmembrane hydrolases

Author(s): Pei Jimin | Millay Douglas | Olson Eric | Grishin Nick
Volume: 6
Issue: 1
Year: 2011
Structural influence of gene networks on their inference: analysis of C3NET

Author(s): Altay Gökmen | Emmert-Streib Frank
Volume: 6
Issue: 1
Year: 2011
ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates

Author(s): Li Juntao | Paramita Puteri | Choi Kwok | Karuturi R Krishna
Volume: 6
Issue: 1
Year: 2011
Molecular evolution of rbcL in three gymnosperm families: identifying adaptive and coevolutionary patterns

Author(s): Sen Lin | Fares Mario | Liang Bo | Gao Lei | Wang Bo | Wang Ting | Su Ying-Juan
Volume: 6
Issue: 1
Year: 2011
Interplay of recombination and selection in the genomes of Chlamydia trachomatis

Author(s): Joseph Sandeep | Didelot Xavier | Gandhi Khanjan | Dean Deborah | Read Timothy
Volume: 6
Issue: 1
Year: 2011
A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes

Author(s): Chernikova Diana | Motamedi Sam | Csürös Miklós | Koonin Eugene | Rogozin Igor
Volume: 6
Issue: 1
Year: 2011
MicroRNA expression in multiple myeloma is associated with genetic subtype, isotype and survival

Author(s): Chi Jianxiang | Ballabio Erica | Chen Xiao-He | Kušec Rajko | Taylor Steve | Hay Deborah | Tramonti Daniela | Saunders Nigel | Littlewood Timothy | Pezzella Francesco | Boultwood Jacqueline | Wainscoat James | Hatton Christian | Lawrie Charles
Volume: 6
Issue: 1
Year: 2011
Causal graph-based analysis of genome-wide association data in rheumatoid arthritis

Author(s): Alekseyenko Alexander | Lytkin Nikita | Ai Jizhou | Ding Bo | Padyukov Leonid | Aliferis Constantin | Statnikov Alexander
Volume: 6
Issue: 1
Year: 2011
Evolutionary plasticity determination by orthologous groups distribution

Author(s): Dalmolin Rodrigo | Castro Mauro | Rybarczyk Filho José | Souza Luis | de Almeida Rita | Moreira José
Volume: 6
Issue: 1
Year: 2011
Statistical methods for detecting periodic fragments in DNA sequence data

Author(s): Epps Julien | Ying Hua | Huttley Gavin
Volume: 6
Issue: 1
Year: 2011
On the relationship between the load and the variance of relative fitness

Author(s): Shnol Emmanuil | Ermakova Elena | Kondrashov Alexey
Volume: 6
Issue: 1
Year: 2011
Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli

Author(s): Beauregard-Racine Julie | Bicep Cédric | Schliep Klaus | Lopez Philippe | Lapointe François-Joseph | Bapteste Eric
Volume: 6
Issue: 1
Year: 2011
Early evolution without a tree of life

Author(s): Martin William
Volume: 6
Issue: 1
Year: 2011
Telling the whole story in a 10,000-genome world

Author(s): Beiko Robert
Volume: 6
Issue: 1
Year: 2011
How stands the Tree of Life a century and a half after The Origin?

Author(s): O'Malley Maureen | Koonin Eugene
Volume: 6
Issue: 1
Year: 2011
From the scala naturae to the symbiogenetic and dynamic tree of life

Author(s): Kutschera Ulrich
Volume: 6
Issue: 1
Year: 2011
Energetics and genetics across the prokaryote-eukaryote divide

Author(s): Lane Nick
Volume: 6
Issue: 1
Year: 2011
Structural analysis of hubs in human NR-RTK network

Author(s): Choura Mouna | Rebaï Ahmed
Volume: 6
Issue: 1
Year: 2011
Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins

Author(s): Wong Wing-Cheong | Maurer-Stroh Sebastian | Eisenhaber Frank
Volume: 6
Issue: 1
Year: 2011
Probable presence of an ubiquitous cryptic mitochondrial gene on the antisense strand of the cytochrome oxidase I gene

Author(s): Faure Eric | Delaye Luis | Tribolo Sandra | Levasseur Anthony | Seligmann Hervé | Barthélémy Roxane-Marie
Volume: 6
Issue: 1
Year: 2011
The rhizome of Reclinomonas americana, Homo sapiens, Pediculus humanus and Saccharomyces cerevisiae mitochondria

Author(s): Georgiades Kalliopi | Raoult Didier
Volume: 6
Issue: 1
Year: 2011
Phylogenetic analysis reveals wide distribution of globin X

Author(s): Dröge Jasmin | Makałowski Wojciech
Volume: 6
Issue: 1
Year: 2011
Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data

Author(s): Barozzi Iros | Termanini Alberto | Minucci Saverio | Natoli Gioacchino
Volume: 6
Issue: 1
Year: 2011
Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome

Author(s): Seufferheld Manfredo | Kim Kyung | Whitfield James | Valerio Alejandro | Caetano-Anollés Gustavo
Volume: 6
Issue: 1
Year: 2011
Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteins

Author(s): Peralta Humberto | Guerrero Gabriela | Aguilar Alejandro | Mora Jaime
Volume: 6
Issue: 1
Year: 2011
A mathematical model for targeting chemicals to tissues by exploiting complex degradation

Author(s): Gardiner Bruce | Zhang Lihai | Smith David | Pivonka Peter | Grodzinsky Alan
Volume: 6
Issue: 1
Year: 2011
Kinetics of the viral cycle influence pharmacodynamics of antiretroviral therapy

Author(s): Sedaghat Ahmad | Wilke Claus
Volume: 6
Issue: 1
Year: 2011
Biased gene transfer and its implications for the concept of lineage

Author(s): Andam Cheryl | Gogarten J Peter
Volume: 6
Issue: 1
Year: 2011
A Rooted Net of Life

Author(s): Williams David | Fournier Gregory | Lapierre Pascal | Swithers Kristen | Green Anna | Andam Cheryl | Gogarten J Peter
Volume: 6
Issue: 1
Year: 2011
Expression levels of microRNAs are not associated with their regulatory activities

Author(s): Liang Zhi | Zhou Hong | Zheng Haoran | Wu Jiarui
Volume: 6
Issue: 1
Year: 2011
Families of transposable elements, population structure and the origin of species

Author(s): Jurka Jerzy | Bao Weidong | Kojima Kenji
Volume: 6
Issue: 1
Year: 2011
The public goods hypothesis for the evolution of life on Earth

Author(s): McInerney James | Pisani Davide | Bapteste Eric | O'Connell Mary
Volume: 6
Issue: 1
Year: 2011
A highly conserved family of inactivated archaeal B family DNA polymerases

Author(s): Rogozin Igor | Makarova Kira | Pavlov Youri | Koonin Eugene
Volume: 3
Issue: 1
Year: 2008
Critical role for BIM in T cell receptor restimulation-induced death

Author(s): Snow Andrew | Oliveira João | Zheng Lixin | Dale Janet | Fleisher Thomas | Lenardo Michael
Volume: 3
Issue: 1
Year: 2008
The Last Universal Common Ancestor: emergence, constitution and genetic legacy of an elusive forerunner

Author(s): Glansdorff Nicolas | Xu Ying | Labedan Bernard
Volume: 3
Issue: 1
Year: 2008
Detection of co-eluted peptides using database search methods

Author(s): Alves Gelio | Ogurtsov Aleksey | Kwok Siwei | Wu Wells | Wang Guanghui | Shen Rong-Fong | Yu Yi-Kuo
Volume: 3
Issue: 1
Year: 2008
Genetic characterization of Hawaiian isolates of Plasmodium relictum reveals mixed-genotype infections

Author(s): Jarvi Susan | Farias Margaret | Atkinson Carter
Volume: 3
Issue: 1
Year: 2008
In silico regulatory analysis for exploring human disease progression

Author(s): Holloway Dustin | Kon Mark | DeLisi Charles
Volume: 3
Issue: 1
Year: 2008
A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae

Author(s): Baumann Diana | Cook Malcolm | Ma Limei | Mushegian Arcady | Sanders Erik | Schwartz Joel | Yu C Ron
Volume: 3
Issue: 1
Year: 2008
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia

Author(s): Hou Shaobin | Makarova Kira | Saw Jimmy | Senin Pavel | Ly Benjamin | Zhou Zhemin | Ren Yan | Wang Jianmei | Galperin Michael | Omelchenko Marina | Wolf Yuri | Yutin Natalya | Koonin Eugene | Stott Matthew | Mountain Bruce | Crowe Michelle | Smirnova Angela | Dunfield Peter | Feng Lu | Wang Lei | Alam Maqsudul
Volume: 3
Issue: 1
Year: 2008
Splign: algorithms for computing spliced alignments with identification of paralogs

Author(s): Kapustin Yuri | Souvorov Alexander | Tatusova Tatiana | Lipman David
Volume: 3
Issue: 1
Year: 2008
Classifying transcription factor targets and discovering relevant biological features

Author(s): Holloway Dustin | Kon Mark | DeLisi Charles
Volume: 3
Issue: 1
Year: 2008
14-3-3 theta binding to cell cycle regulatory factors is enhanced by HIV-1 Vpr

Author(s): Bolton Diane | Barnitz Robert | Sakai Keiko | Lenardo Michael
Volume: 3
Issue: 1
Year: 2008
Evolution of complexity in RNA-like replicator systems

Author(s): Takeuchi Nobuto | Hogeweg Paulien
Volume: 3
Issue: 1
Year: 2008
Evolutionary primacy of sodium bioenergetics

Author(s): Mulkidjanian Armen | Galperin Michael | Makarova Kira | Wolf Yuri | Koonin Eugene
Volume: 3
Issue: 1
Year: 2008
Occurrence of cancer at multiple sites: Towards distinguishing multigenesis from metastasis

Author(s): Zhang Wei-Kang | Zhang Chun | Zhang Jing | Liu Shi
Volume: 3
Issue: 1
Year: 2008
Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series

Author(s): Rogozin Igor | Thomson Karen | Csürös Miklós | Carmel Liran | Koonin Eugene
Volume: 3
Issue: 1
Year: 2008
Molecular chaperones and selection against mutations

Author(s): Tomala Katarzyna | Korona Ryszard
Volume: 3
Issue: 1
Year: 2008
Parameters of proteome evolution from histograms of amino-acid sequence identities of paralogous proteins

Author(s): Axelsen Jacob | Yan Koon-Kiu | Maslov Sergei
Volume: 2
Issue: 1
Year: 2007
Revisiting adverse effects of cross-hybridization in Affymetrix gene expression data: do they matter for correlation analysis?

Author(s): Klebanov Lev | Chen Linlin | Yakovlev Andrei
Volume: 2
Issue: 1
Year: 2007
Exosomal transfer of proteins and RNAs at synapses in the nervous system

Author(s): Smalheiser Neil
Volume: 2
Issue: 1
Year: 2007
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

Author(s): Makarova Kira | Sorokin Alexander | Novichkov Pavel | Wolf Yuri | Koonin Eugene
Volume: 2
Issue: 1
Year: 2007
Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla

Author(s): Ryan Joseph | Baxevanis Andreas
Volume: 2
Issue: 1
Year: 2007
Systematic analysis of mRNA 5' coding sequence incompleteness in Danio rerio: an automated EST-based approach

Author(s): Frabetti Flavia | Casadei Raffaella | Lenzi Luca | Canaider Silvia | Vitale Lorenza | Facchin Federica | Carinci Paolo | Zannotti Maria | Strippoli Pierluigi
Volume: 2
Issue: 1
Year: 2007
Evaluating the protein coding potential of exonized transposable element sequences

Author(s): Piriyapongsa Jittima | Rutledge Mark | Patel Sanil | Borodovsky Mark | Jordan I King
Volume: 2
Issue: 1
Year: 2007
Calibrating E-values for MS2 database search methods

Author(s): Alves Gelio | Ogurtsov Aleksey | Wu Wells | Wang Guanghui | Shen Rong-Fong | Yu Yi-Kuo
Volume: 2
Issue: 1
Year: 2007
A statistical analysis of the three-fold evolution of genomic compression through frame overlaps in prokaryotes

Author(s): Lillo Fabrizio | Krakauer David
Volume: 2
Issue: 1
Year: 2007
Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: are they proof of an ancient genome duplication event?

Author(s): Martin Nicolas | Ruedi Elizabeth | LeDuc Richard | Sun Feng-Jie | Caetano-Anollés Gustavo
Volume: 2
Issue: 1
Year: 2007
Extensive parallelism in protein evolution

Author(s): Bazykin Georgii | Kondrashov Fyodor | Brudno Michael | Poliakov Alexander | Dubchak Inna | Kondrashov Alexey
Volume: 2
Issue: 1
Year: 2007
The Biological Big Bang model for the major transitions in evolution

Author(s): Koonin Eugene
Volume: 2
Issue: 1
Year: 2007
Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold

Author(s): Burroughs A Maxwell | Balaji S | Iyer Lakshminarayan | Aravind L
Volume: 2
Issue: 1
Year: 2007
Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution

Author(s): Bloom Jesse | Romero Philip | Lu Zhongyi | Arnold Frances
Volume: 2
Issue: 1
Year: 2007
The stochastic behavior of a molecular switching circuit with feedback

Author(s): Krishnamurthy Supriya | Smith Eric | Krakauer David | Fontana Walter
Volume: 2
Issue: 1
Year: 2007
nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays

Author(s): Du Pan | Kibbe Warren | Lin Simon
Volume: 2
Issue: 1
Year: 2007
The ability of natural tolerance to be applied to allogeneic tissue: determinants and limits

Author(s): Chan William | Perez-Diez Ainhoa | Razavy Haide | Anderson Colin
Volume: 2
Issue: 1
Year: 2007
How high is the level of technical noise in microarray data?

Author(s): Klebanov Lev | Yakovlev Andrei
Volume: 2
Issue: 1
Year: 2007
Retrospective analysis of protein kinase C-beta (PKC-β) expression in lymphoid malignancies and its association with survival in diffuse large B-cell lymphomas

Author(s): Li Shuyu | Phong Mark | Lahn Michael | Brail Leslie | Sutton Susan | Lin Boris | Thornton Donald | Liao Birong
Volume: 2
Issue: 1
Year: 2007
Intron Evolution and Information processing in the DNA polymerase α gene in spirotrichous ciliates: A hypothesis for interconversion between DNA and RNA deletion

Author(s): Chang Wei-Jen | Addis Victoria | Li Anya | Axelsson Elin | Ardell David | Landweber Laura
Volume: 2
Issue: 1
Year: 2007
Origin of phagotrophic eukaryotes as social cheaters in microbial biofilms

Author(s): Jékely Gáspár
Volume: 2
Issue: 1
Year: 2007
A novel superfamily containing the β-grasp fold involved in binding diverse soluble ligands

Author(s): Burroughs A Maxwell | Balaji S | Iyer Lakshminarayan | Aravind L
Volume: 2
Issue: 1
Year: 2007
Conserved intron positions in ancient protein modules

Author(s): de Roos Albert
Volume: 2
Issue: 1
Year: 2007
pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

Author(s): Neuberger Georg | Schneider Georg | Eisenhaber Frank
Volume: 2
Issue: 1
Year: 2007
The immune-body cytokine network defines a social architecture of cell interactions

Author(s): Frankenstein Ziv | Alon Uri | Cohen Irun
Volume: 1
Issue: 1
Year: 2006
Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus

Author(s): Wolf Yuri | Viboud Cecile | Holmes Edward | Koonin Eugene | Lipman David
Volume: 1
Issue: 1
Year: 2006
Mathematical modeling of tumor therapy with oncolytic viruses: effects of parametric heterogeneity on cell dynamics

Author(s): Karev Georgy | Novozhilov Artem | Koonin Eugene
Volume: 1
Issue: 1
Year: 2006
Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation

Author(s): Kondrashov Fyodor | Koonin Eugene | Morgunov Igor | Finogenova Tatiana | Kondrashova Marie
Volume: 1
Issue: 1
Year: 2006
Too much data, but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression

Author(s): Li Shuyu | Li Yiqun | Wei Tao | Su Eric | Duffin Kevin | Liao Birong
Volume: 1
Issue: 1
Year: 2006
Rooting the tree of life by transition analyses

Author(s): Cavalier-Smith Thomas
Volume: 1
Issue: 1
Year: 2006
The signaling helix: a common functional theme in diverse signaling proteins

Author(s): Anantharaman Vivek | Balaji S | Aravind L
Volume: 1
Issue: 1
Year: 2006
The ancient Virus World and evolution of cells

Author(s): Koonin Eugene | Senkevich Tatiana | Dolja Valerian
Volume: 1
Issue: 1
Year: 2006
Phylogeographic support for horizontal gene transfer involving sympatric bruchid species

Author(s): Alvarez Nadir | Benrey Betty | Hossaert-McKey Martine | Grill Andrea | McKey Doyle | Galtier Nicolas
Volume: 1
Issue: 1
Year: 2006
A system for studying evolution of life-like virtual organisms

Author(s): Neyfakh Alex | Baranova Natalya | Mizrokhi Lev
Volume: 1
Issue: 1
Year: 2006
Refuting phylogenetic relationships

Author(s): Bucknam James | Boucher Yan | Bapteste Eric
Volume: 1
Issue: 1
Year: 2006
Genome increase as a clock for the origin and evolution of life

Author(s): Sharov Alexei
Volume: 1
Issue: 1
Year: 2006
Transposable element derived DNaseI-hypersensitive sites in the human genome

Author(s): Mariño-Ramírez Leonardo | Jordan I King
Volume: 1
Issue: 1
Year: 2006
Positive selection on the nonhomologous end-joining factor Cernunnos-XLF in the human lineage

Author(s): Pavlicek Adam | Jurka Jerzy
Volume: 1
Issue: 1
Year: 2006
Hereditary profiles of disorderly transcription?

Author(s): Simons Johannes
Volume: 1
Issue: 1
Year: 2006
A survey of motif discovery methods in an integrated framework

Author(s): Sandve Geir | Drabløs Finn
Volume: 1
Issue: 1
Year: 2006
Outer membrane protein genes and their small non-coding RNA regulator genes in Photorhabdus luminescens

Author(s): Papamichail Dimitris | Delihas Nicholas
Volume: 1
Issue: 1
Year: 2006
Origin and evolution of the peroxisomal proteome

Author(s): Gabaldón Toni | Snel Berend | Zimmeren Frank van | Hemrika Wieger | Tabak Henk | Huynen Martijn
Volume: 1
Issue: 1
Year: 2006
Mathematical modeling of tumor therapy with oncolytic viruses: Regimes with complete tumor elimination within the framework of deterministic models

Author(s): Novozhilov Artem | Berezovskaya Faina | Koonin Eugene | Karev Georgy
Volume: 1
Issue: 1
Year: 2006
Mutational hotspots in the TP53 gene and, possibly, other tumor suppressors evolve by positive selection

Author(s): Glazko Galina | Babenko Vladimir | Koonin Eugene | Rogozin Igor
Volume: 1
Issue: 1
Year: 2006
The orthology of HLA-E and H2-Qa1 is hidden by their concerted evolution with other MHC class I molecules

Author(s): Joly Etienne | Rouillon Virginie
Volume: 1
Issue: 1
Year: 2006
On origin of genetic code and tRNA before translation

Author(s): Rodin Andrei | Szathmáry Eörs | Rodin Sergei
Volume: 6
Issue: 1
Year: 2011
Nonsynonymous substitution rate (Ka) is a relatively consistent parameter for defining fast-evolving and slow-evolving protein-coding genes

Author(s): Wang Dapeng | Liu Fei | Wang Lei | Huang Shi | Yu Jun
Volume: 6
Issue: 1
Year: 2011
Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale

Author(s): Shmelkov Evgeny | Tang Zuojian | Aifantis Iannis | Statnikov Alexander
Volume: 6
Issue: 1
Year: 2011
Functional analysis of archaeal MBF1 by complementation studies in yeast

Author(s): Marrero Coto Jeannette | Ehrenhofer-Murray Ann | Pons Tirso | Siebers Bettina
Volume: 6
Issue: 1
Year: 2011
Do clones degenerate over time? Explaining the genetic variability of asexuals through population genetic models

Author(s): Janko Karel | Drozd Pavel | Eisner Jan
Volume: 6
Issue: 1
Year: 2011
The struggle for life of the genome's selfish architects

Author(s): Hua-Van Aurélie | Le Rouzic Arnaud | Boutin Thibaud | Filée Jonathan | Capy Pierre
Volume: 6
Issue: 1
Year: 2011
How many antiviral small interfering RNAs may be encoded by the mammalian genomes?

Author(s): Zabolotneva Anastasia | Tkachev Victor | Filatov Felix | Buzdin Anton
Volume: 5
Issue: 1
Year: 2010
Mitochondrial pathogenic mutations are population-specific

Author(s): Breen Michael | Kondrashov Fyodor
Volume: 5
Issue: 1
Year: 2010
The advantages and disadvantages of horizontal gene transfer and the emergence of the first species

Author(s): Vogan Aaron | Higgs Paul
Volume: 6
Issue: 1
Year: 2011
Evolution of gene regulation of pluripotency - the case for wiki tracks at genome browsers

Author(s): Fuellen Georg | Struckmann Stephan
Volume: 5
Issue: 1
Year: 2010
Impact of Alu repeats on the evolution of human p53 binding sites

Author(s): Cui Feng | Sirotin Michael | Zhurkin Victor
Volume: 6
Issue: 1
Year: 2011
Consequences of cell-to-cell P-glycoprotein transfer on acquired multidrug resistance in breast cancer: a cell population dynamics model

Author(s): Pasquier Jennifer | Magal Pierre | Boulangé-Lecomte Céline | Webb Glenn | Le Foll Frank
Volume: 6
Issue: 1
Year: 2011
Modeling RNA polymerase competition: the effect of σ-subunit knockout and heat shock on gene transcription level

Author(s): Lyubetsky Vassily | Zverkov Oleg | Rubanov Lev | Seliverstov Alexandr
Volume: 6
Issue: 1
Year: 2011
A rebuttal to the comments on the genome order index and the Z-curve

Author(s): Zhang Ren
Volume: 6
Issue: 1
Year: 2011
Enhanced immunogenicity of pneumococcal surface adhesin A (PsaA) in mice via fusion to recombinant human B lymphocyte stimulator (BLyS)

Author(s): Gor Dennis | Ding Xuedong | Li Qing | Sultana Dilara | Mambula Salamatu | Bram Richard | Greenspan Neil
Volume: 6
Issue: 1
Year: 2011
Gene gain and loss events in Rickettsia and Orientia species

Author(s): Georgiades Kalliopi | Merhej Vicky | El Karkouri Khalid | Raoult Didier | Pontarotti Pierre
Volume: 6
Issue: 1
Year: 2011
Riboswitches as hormone receptors: hypothetical cytokinin-binding riboswitches in Arabidopsis thaliana

Author(s): Grojean Jeremy | Downes Brian
Volume: 5
Issue: 1
Year: 2010
Modeling compositional dynamics based on GC and purine contents of protein-coding sequences

Author(s): Zhang Zhang | Yu Jun
Volume: 5
Issue: 1
Year: 2010
Proteomic changes associated with deletion of the Magnaporthe oryzae conidial morphology-regulating gene COM1

Author(s): Bhadauria Vijai | Wang Li-Xia | Peng You-Liang
Volume: 5
Issue: 1
Year: 2010
Relating underrepresented genomic DNA patterns and tiRNAs: the rule behind the observation and beyond

Author(s): Cserzo Miklos | Turu Gabor | Varnai Peter | Hunyady Laszlo
Volume: 5
Issue: 1
Year: 2010
The ancient function of RB-E2F Pathway: insights from its evolutionary history

Author(s): Cao Lihuan | Peng Bo | Yao Lei | Zhang Xinming | Sun Kuan | Yang Xianmei | Yu Long
Volume: 5
Issue: 1
Year: 2010
The calculation of information and organismal complexity

Author(s): Jiang Yun | Xu Cunshuan
Volume: 5
Issue: 1
Year: 2010
Save the tree of life or get lost in the woods

Author(s): Valas Ruben | Bourne Philip
Volume: 5
Issue: 1
Year: 2010
An age-dependent branching process model for the analysis of CFSE-labeling experiments

Author(s): Hyrien Ollivier | Chen Rui | Zand Martin
Volume: 5
Issue: 1
Year: 2010
The evolutionary rate variation among genes of HOG-signaling pathway in yeast genomes

Author(s): Wu Xuechang | Chi Xiaoqin | Wang Pinmei | Zheng Daoqiong | Ding Rui | Li Yudong
Volume: 5
Issue: 1
Year: 2010
Some considerations for analyzing biodiversity using integrative metagenomics and gene networks

Author(s): Bittner Lucie | Halary Sébastien | Payri Claude | Cruaud Corinne | de Reviers Bruno | Lopez Philippe | Bapteste Eric
Volume: 5
Issue: 1
Year: 2010
Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis

Author(s): Aravind L | de Souza Robson | Iyer Lakshminarayan
Volume: 5
Issue: 1
Year: 2010
Co-lethality studied as an asset against viral drug escape: the HIV protease case

Author(s): Brouillet Sophie | Valere Thomas | Ollivier Emmanuelle | Marsan Laurent | Vanet Anne
Volume: 5
Issue: 1
Year: 2010
Undetected antisense tRNAs in mitochondrial genomes?

Author(s): Seligmann Hervé
Volume: 5
Issue: 1
Year: 2010
A theoretical quantitative model for evolution of cancer chemotherapy resistance

Author(s): Silva Ariosto | Gatenby Robert
Volume: 5
Issue: 1
Year: 2010
Tumor morphological evolution: directed migration and gain and loss of the self-metastatic phenotype

Author(s): Enderling Heiko | Hlatky Lynn | Hahnfeldt Philip
Volume: 5
Issue: 1
Year: 2010
Locality versus globality in bacterial signalling: can local communication stabilize bacterial communities?

Author(s): Venturi Vittorio | Kerényi Ádám | Reiz Beáta | Bihary Dóra | Pongor Sándor
Volume: 5
Issue: 1
Year: 2010
Selection in spatial stochastic models of cancer: Migration as a key modulator of fitness

Author(s): Thalhauser Craig | Lowengrub John | Stupack Dwayne | Komarova Natalia
Volume: 5
Issue: 1
Year: 2010
Disruption of a Quorum Sensing mechanism triggers tumorigenesis: a simple discrete model corroborated by experiments in mammary cancer stem cells

Author(s): Agur Zvia | Kogan Yuri | Levi Liora | Harrison Hannah | Lamb Rebecca | Kirnasovsky Oleg | Clarke Robert
Volume: 5
Issue: 1
Year: 2010
Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution

Author(s): Omelchenko Marina | Galperin Michael | Wolf Yuri | Koonin Eugene
Volume: 5
Issue: 1
Year: 2010
The evolutionary impact of androgen levels on prostate cancer in a multi-scale mathematical model

Author(s): Eikenberry Steffen | Nagy John | Kuang Yang
Volume: 5
Issue: 1
Year: 2010
Oscillatory dynamics in a model of vascular tumour growth - implications for chemotherapy

Author(s): Stamper IJ | Owen MR | Maini PK | Byrne HM
Volume: 5
Issue: 1
Year: 2010
GTPases and the origin of the ribosome

Author(s): Hartman Hyman | Smith Temple
Volume: 5
Issue: 1
Year: 2010
Modularity and anti-modularity in networks with arbitrary degree distribution

Author(s): Hintze Arend | Adami Christoph
Volume: 5
Issue: 1
Year: 2010
Selection for the compactness of highly expressed genes in Gallus gallus

Author(s): Rao You | Wang Zhang | Chai Xue | Wu Guo | Zhou Ming | Nie Qing | Zhang Xi
Volume: 5
Issue: 1
Year: 2010
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

Author(s): Keller Alexander | Förster Frank | Müller Tobias | Dandekar Thomas | Schultz Jörg | Wolf Matthias
Volume: 5
Issue: 1
Year: 2010
Predicting the pathway involved in post-translational modification of Elongation factor P in a subset of bacterial species

Author(s): Bailly Marc | de Crécy-Lagard Valérie
Volume: 5
Issue: 1
Year: 2010
Novel eukaryotic enzymes modifying cell-surface biopolymers

Author(s): Anantharaman Vivek | Aravind L
Volume: 5
Issue: 1
Year: 2010
Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data

Author(s): Schweiger Regev | Linial Michal
Volume: 5
Issue: 1
Year: 2010
Low level of polymorphism in two putative NPR1 homologs in the Vitaceae family

Author(s): Bergeault Karine | Bertsch Christophe | Merdinoglu Didier | Walter Bernard
Volume: 5
Issue: 1
Year: 2010
Proteome changes of Caenorhabditis elegans upon a Staphylococcus aureus infection

Author(s): Bogaerts Annelies | Beets Isabel | Temmerman Liesbet | Schoofs Liliane | Verleyen Peter
Volume: 5
Issue: 1
Year: 2010
Rate of sequence divergence under constant selection

Author(s): Kondrashov Alexey | Povolotskaya Inna | Ivankov Dmitry | Kondrashov Fyodor
Volume: 5
Issue: 1
Year: 2010
Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution

Author(s): Cavalier-Smith Thomas
Volume: 5
Issue: 1
Year: 2010
Evolution of DNA ligases of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes: a case of hidden complexity

Author(s): Yutin Natalya | Koonin Eugene
Volume: 4
Issue: 1
Year: 2009
Depauperate genetic variability detected in the American and European bison using genomic techniques

Author(s): Pertoldi Cino | Tokarska Małgorzata | Wójcik Jan | Demontis Ditte | Loeschcke Volker | Gregersen Vivi | Coltman David | Wilson Gregory | Randi Ettore | Hansen Michael | Bendixen Christian
Volume: 4
Issue: 1
Year: 2009
Trees and networks before and after Darwin

Author(s): Ragan Mark
Volume: 4
Issue: 1
Year: 2009
Human γδ T cell Recognition of lipid A is predominately presented by CD1b or CD1c on dendritic cells

Author(s): Cui Yongchun | Kang Lei | Cui Lianxian | He Wei
Volume: 4
Issue: 1
Year: 2009
Is evolution Darwinian or/and Lamarckian?

Author(s): Koonin Eugene | Wolf Yuri
Volume: 4
Issue: 1
Year: 2009
Exceptional error minimization in putative primordial genetic codes

Author(s): Novozhilov Artem | Koonin Eugene
Volume: 4
Issue: 1
Year: 2009
Evolution by leaps: gene duplication in bacteria

Author(s): Serres Margrethe | Kerr Alastair | McCormack Thomas | Riley Monica
Volume: 4
Issue: 1
Year: 2009
Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

Author(s): Llorens Carlos | Muñoz-Pomer Alfonso | Bernad Lucia | Botella Hector | Moya Andrés
Volume: 4
Issue: 1
Year: 2009
On the need for widespread horizontal gene transfers under genome size constraint

Author(s): Isambert Hervé | Stein Richard
Volume: 4
Issue: 1
Year: 2009
Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements

Author(s): Makarova Kira | Wolf Yuri | van der Oost John | Koonin Eugene
Volume: 4
Issue: 1
Year: 2009
Multipotent adult germ-line stem cells, like other pluripotent stem cells, can be killed by cytotoxic T lymphocytes despite low expression of major histocompatibility complex class I molecules

Author(s): Dressel Ralf | Guan Kaomei | Nolte Jessica | Elsner Leslie | Monecke Sebastian | Nayernia Karim | Hasenfuss Gerd | Engel Wolfgang
Volume: 4
Issue: 1
Year: 2009
Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life

Author(s): Valas Ruben | Bourne Philip
Volume: 4
Issue: 1
Year: 2009
Hypothesis for heritable, anti-viral immunity in crustaceans and insects

Author(s): Flegel Timothy
Volume: 4
Issue: 1
Year: 2009
Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria

Author(s): Kuo Chih-Horng | Ochman Howard
Volume: 4
Issue: 1
Year: 2009
Prokaryotic evolution and the tree of life are two different things

Author(s): Bapteste Eric | O'Malley Maureen | Beiko Robert | Ereshefsky Marc | Gogarten J Peter | Franklin-Hall Laura | Lapointe François-Joseph | Dupré John | Dagan Tal | Boucher Yan | Martin William
Volume: 4
Issue: 1
Year: 2009
The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum

Author(s): Koonin Eugene | Wolf Yuri
Volume: 4
Issue: 1
Year: 2009
Divergent evolution and purifying selection of the flaA gene sequences in Aeromonas

Author(s): Farfán Maribel | Miñana-Galbis David | Fusté M Carmen | Lorén J Gaspar
Volume: 4
Issue: 1
Year: 2009
Retention of the virus-derived sequences in the nuclear genome of grapevine as a potential pathway to virus resistance

Author(s): Bertsch Christophe | Beuve Monique | Dolja Valerian | Wirth Marion | Pelsy Frédérique | Herrbach Etienne | Lemaire Olivier
Volume: 4
Issue: 1
Year: 2009
Massive comparative genomic analysis reveals convergent evolution of specialized bacteria

Author(s): Merhej Vicky | Royer-Carenzi Manuela | Pontarotti Pierre | Raoult Didier
Volume: 4
Issue: 1
Year: 2009
Chaotic expression dynamics implies pluripotency: when theory and experiment meet

Author(s): Furusawa Chikara | Kaneko Kunihiko
Volume: 4
Issue: 1
Year: 2009
One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation

Author(s): Rodin Andrei | Szathmáry Eörs | Rodin Sergei
Volume: 4
Issue: 1
Year: 2009
Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol ε and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors

Author(s): Tahirov Tahir | Makarova Kira | Rogozin Igor | Pavlov Youri | Koonin Eugene
Volume: 4
Issue: 1
Year: 2009
A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

Author(s): Emiliani Giovanni | Fondi Marco | Fani Renato | Gribaldo Simonetta
Volume: 4
Issue: 1
Year: 2009
A simple model for the early events of quorum sensing in Pseudomonas aeruginosa: modeling bacterial swarming as the movement of an "activation zone"

Author(s): Netotea Sergiu | Bertani Iris | Steindler Laura | Kerényi Ádám | Venturi Vittorio | Pongor Sándor
Volume: 4
Issue: 1
Year: 2009
The evolution of strand preference in simulated RNA replicators with strand displacement: Implications for the origin of transcription

Author(s): Takeuchi Nobuto | Salazar Laura | Poole Anthony | Hogeweg Paulien
Volume: 3
Issue: 1
Year: 2008
A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis

Author(s): Rattray Jayne | Strous Marc | Op den Camp Huub | Schouten Stefan | Jetten Mike | Damsté Jaap
Volume: 4
Issue: 1
Year: 2009
The origins of phagocytosis and eukaryogenesis

Author(s): Yutin Natalya | Wolf Maxim | Wolf Yuri | Koonin Eugene
Volume: 4
Issue: 1
Year: 2009
Issues associated with assessing nuclear localization of N-terminally unphosphorylated β-catenin with monoclonal antibody 8E7

Author(s): Maher Meghan | Flozak Annette | Hartsell Alyssa | Russell Susan | Beri Rohinee | Peled Ofra | Gottardi Cara
Volume: 4
Issue: 1
Year: 2009
Bioinformatic flowchart and database to investigate the origins and diversity of Clan AA peptidases

Author(s): Llorens Carlos | Futami Ricardo | Renaud Gabriel | Moya Andrés
Volume: 4
Issue: 1
Year: 2009
Evidence from glycine transfer RNA of a frozen accident at the dawn of the genetic code

Author(s): Bernhardt Harold | Tate Warren
Volume: 3
Issue: 1
Year: 2008
The human Ago2 MC region does not contain an eIF4E-like mRNA cap binding motif

Author(s): Kinch Lisa | Grishin Nick
Volume: 4
Issue: 1
Year: 2009
Exon definition as a potential negative force against intron losses in evolution

Author(s): Niu Deng-Ke
Volume: 3
Issue: 1
Year: 2008
The evolution of domain-content in bacterial genomes

Author(s): Molina Nacho | van Nimwegen Erik
Volume: 3
Issue: 1
Year: 2008
Are we degenerate tetraploids? More genomes, new facts

Author(s): Abbasi Amir
Volume: 3
Issue: 1
Year: 2008
Pitfalls of the most commonly used models of context dependent substitution

Author(s): Lindsay Helen | Yap Von | Ying Hua | Huttley Gavin
Volume: 3
Issue: 1
Year: 2008
Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage

Author(s): Rolain Jean-Marc | François Patrice | Hernandez David | Bittar Fadi | Richet Hervé | Fournous Ghislain | Mattenberger Yves | Bosdure Emmanuelle | Stremler Nathalie | Dubus Jean-Christophe | Sarles Jacques | Reynaud-Gaubert Martine | Boniface Stephanie | Schrenzel Jacques | Raoult Didier
Volume: 4
Issue: 1
Year: 2009
Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?

Author(s): Jobson Richard | Qiu Yin-Long
Volume: 3
Issue: 1
Year: 2008
A nitty-gritty aspect of correlation and network inference from gene expression data

Author(s): Klebanov Lev | Yakovlev Andrei
Volume: 3
Issue: 1
Year: 2008
An extension of the coevolution theory of the origin of the genetic code

Author(s): Di Giulio Massimo
Volume: 3
Issue: 1
Year: 2008
Same-strand overlapping genes in bacteria: compositional determinants of phase bias

Author(s): Sabath Niv | Graur Dan | Landan Giddy
Volume: 3
Issue: 1
Year: 2008
Endosymbiont or host: who drove mitochondrial and plastid evolution?

Author(s): Gross Jeferson | Bhattacharya Debashish
Volume: 6
Issue: 1
Year: 2011
The multiple personalities of Watson and Crick strands

Author(s): Cartwright Reed | Graur Dan
Volume: 6
Issue: 1
Year: 2011
Spontaneous chiral symmetry breaking in early molecular networks

Author(s): Kafri Ran | Markovitch Omer | Lancet Doron
Volume: 5
Issue: 1
Year: 2010
Opportunities and challenges for digital morphology

Author(s): Ziegler Alexander | Ogurreck Malte | Steinke Thomas | Beckmann Felix | Prohaska Steffen | Ziegler Andreas
Volume: 5
Issue: 1
Year: 2010
Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome

Author(s): Wang Shi | Zhang Lingling | Meyer Eli | Bao Zhenmin
Volume: 5
Issue: 1
Year: 2010
Cancer models, genomic instability and somatic cellular Darwinian evolution

Author(s): Little Mark
Volume: 5
Issue: 1
Year: 2010
Lack of conservation of bacterial type promoters in plastids of Streptophyta

Author(s): Lyubetsky Vassily | Rubanov Lev | Seliverstov Alexandr
Volume: 5
Issue: 1
Year: 2010
Community annotation in biology

Author(s): Mazumder Raja | Natale Darren | Julio Jessica | Yeh Lai-Su | Wu Cathy
Volume: 5
Issue: 1
Year: 2010
Hypothesis for heritable, anti-viral immunity in crustaceans and insects

Author(s): Flegel Timothy
Volume: 4
Issue: 1
Year: 2009
Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea

Author(s): Blombach Fabian | Makarova Kira | Marrero Jeannette | Siebers Bettina | Koonin Eugene | Oost John
Volume: 4
Issue: 1
Year: 2009
Identification of a crenarchaeal orthologue of Elf1: implications for chromatin and transcription in Archaea

Author(s): Daniels Jan-Peter | Kelly Steven | Wickstead Bill | Gull Keith
Volume: 4
Issue: 1
Year: 2009
Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites

Author(s): Maurer-Stroh Sebastian | Ma Jianmin | Lee Raphael | Sirota Fernanda | Eisenhaber Frank
Volume: 4
Issue: 1
Year: 2009
Transcript length bias in RNA-seq data confounds systems biology

Author(s): Oshlack Alicia | Wakefield Matthew
Volume: 4
Issue: 1
Year: 2009
Deciphering peculiar protein-protein interacting modules in Deinococcus radiodurans

Author(s): Mezhoud Karim | Sghaier Haïtham | Barkallah Insaf
Volume: 4
Issue: 1
Year: 2009
A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya

Author(s): Brochier-Armanet Céline | Gribaldo Simonetta | Forterre Patrick
Volume: 3
Issue: 1
Year: 2008
Accumulation of GC donor splice signals in mammals

Author(s): Churbanov Alexander | Winters-Hilt Stephen | Koonin Eugene | Rogozin Igor
Volume: 3
Issue: 1
Year: 2008
U12 intron positions are more strongly conserved between animals and plants than U2 intron positions

Author(s): Basu Malay | Makalowski Wojciech | Rogozin Igor | Koonin Eugene
Volume: 3
Issue: 1
Year: 2008
On the brink between extinction and persistence

Author(s): Pertoldi Cino | Bach Lars | Loeschcke Volker
Volume: 3
Issue: 1
Year: 2008
Transduplication resulted in the incorporation of two protein-coding sequences into the Turmoil-1 transposable element of C. elegans

Author(s): Sela Noa | Stern Adi | Makalowski Wojciech | Pupko Tal | Ast Gil
Volume: 3
Issue: 1
Year: 2008
A new family of polymerases related to superfamily A DNA polymerases and T7-like DNA-dependent RNA polymerases

Author(s): Iyer Lakshminarayan | Abhiman Saraswathi | Aravind L
Volume: 3
Issue: 1
Year: 2008
The origin and evolution of the ribosome

Author(s): Smith Temple | Lee Jung | Gutell Robin | Hartman Hyman
Volume: 3
Issue: 1
Year: 2008
MutL homologs in restriction-modification systems and the origin of eukaryotic MORC ATPases

Author(s): Iyer Lakshminarayan | Abhiman Saraswathi | Aravind L
Volume: 3
Issue: 1
Year: 2008
Orphan SelD proteins and selenium-dependent molybdenum hydroxylases

Author(s): Haft Daniel | Self William
Volume: 3
Issue: 1
Year: 2008
Dr. Andrei Yakovlev: Visionary, Leader, Iconoclast

Author(s): Gusev Yuriy | Hanin Leonid | Klebanov Lev | Tsodikov Alex | Yanev Nikolay | Zorin Alexander
Volume: 3
Issue: 1
Year: 2008
Epigenetic hereditary transcription profiles II, aging revisited

Author(s): Simons Johannes
Volume: 2
Issue: 1
Year: 2007
The control of CD4+CD25+Foxp3+ regulatory T cell survival

Author(s): Pandiyan Pushpa | Lenardo Michael
Volume: 3
Issue: 1
Year: 2008
The prokaryotic V4R domain is the likely ancestor of a key component of the eukaryotic vesicle transport system

Author(s): Podar Mircea | Wall Mark | Makarova Kira | Koonin Eugene
Volume: 3
Issue: 1
Year: 2008
Predicting the conformations of peptides and proteins in early evolution. A review article submitted to Biology Direct

Author(s): Milner-White E James | Russell Michael
Volume: 3
Issue: 1
Year: 2008
RAId_DbS: Peptide Identification using Database Searches with Realistic Statistics

Author(s): Alves Gelio | Ogurtsov Aleksey | Yu Yi-Kuo
Volume: 2
Issue: 1
Year: 2007
The new biology: beyond the Modern Synthesis

Author(s): Rose Michael | Oakley Todd
Volume: 2
Issue: 1
Year: 2007
Component retention in principal component analysis with application to cDNA microarray data

Author(s): Cangelosi Richard | Goriely Alain
Volume: 2
Issue: 1
Year: 2007
Resistance of the target islet tissue to autoimmune destruction contributes to genetic susceptibility in Type 1 diabetes

Author(s): Hill Natasha | Stotland Aleksandr | Solomon Michelle | Secrest Patrick | Getzoff Elizabeth | Sarvetnick Nora
Volume: 2
Issue: 1
Year: 2007
Did the last common ancestor have a biological membrane?

Author(s): Jékely Gáspár
Volume: 1
Issue: 1
Year: 2006
Clinical applications of Genome Polymorphism Scans

Author(s): Weber James
Volume: 1
Issue: 1
Year: 2006
Similarity searches in genome-wide numerical data sets

Author(s): Glazko Galina | Coleman Michael | Mushegian Arcady
Volume: 1
Issue: 1
Year: 2006
The look-ahead effect of phenotypic mutations

Author(s): Whitehead Dion | Wilke Claus | Vernazobres David | Bornberg-Bauer Erich
Volume: 3
Issue: 1
Year: 2008
Evolutionary history of bacteriophages with double-stranded DNA genomes

Author(s): Glazko Galina | Makarenkov Vladimir | Liu Jing | Mushegian Arcady
Volume: 2
Issue: 1
Year: 2007
Method of predicting Splice Sites based on signal interactions

Author(s): Churbanov Alexander | Rogozin Igor | Deogun Jitender | Ali Hesham
Volume: 1
Issue: 1
Year: 2006
The common ancestry of life

Author(s): Koonin Eugene | Wolf Yuri
Volume: 5
Issue: 1
Year: 2010
The origin of Eastern European Jews revealed by autosomal, sex chromosomal and mtDNA polymorphisms

Author(s): Zoossmann-Diskin Avshalom
Volume: 5
Issue: 1
Year: 2010
A mathematical model of bone remodeling dynamics for normal bone cell populations and myeloma bone disease

Author(s): Ayati Bruce | Edwards Claire | Webb Glenn | Wikswo John
Volume: 5
Issue: 1
Year: 2010
The evolution and functional repertoire of translation proteins following the origin of life

Author(s): Goldman Aaron | Samudrala Ram | Baross John
Volume: 5
Issue: 1
Year: 2010
OST-HTH: a novel predicted RNA-binding domain

Author(s): Anantharaman Vivek | Zhang Dapeng | Aravind L
Volume: 5
Issue: 1
Year: 2010
CD44 expression positively correlates with Foxp3 expression and suppressive function of CD4+ Treg cells

Author(s): Liu Tie | Soong Lynn | Liu Gang | König Rolf | Chopra Ashok
Volume: 4
Issue: 1
Year: 2009
Activating and inhibiting connections in biological network dynamics

Author(s): McDonald Daniel | Waterbury Laura | Knight Rob | Betterton M
Volume: 3
Issue: 1
Year: 2008
Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination

Author(s): Iyer Lakshminarayan | Burroughs AM | Aravind L
Volume: 3
Issue: 1
Year: 2008
Evolutionary patterns of phosphorylated serines

Author(s): Kurmangaliyev Yerbol | Goland Alexander | Gelfand Mikhail
Volume: 6
Issue: 1
Year: 2011
Evolution and cancer: a mathematical biology approach

Author(s): Kimmel Marek
Volume: 5
Issue: 1
Year: 2010
Genome factor and gene pleiotropy hypotheses in protein evolution

Author(s): Zeng Yanwu | Gu Xun
Volume: 5
Issue: 1
Year: 2010
FOXP3 and GARP (LRRC32): the master and its minion

Author(s): Probst-Kepper Michael | Buer Jan
Volume: 5
Issue: 1
Year: 2010
Strong association between pseudogenization mechanisms and gene sequence length

Author(s): Khachane Amit | Harrison Paul
Volume: 4
Issue: 1
Year: 2009
Pitfalls of the most commonly used models of context dependent substitution

Author(s): Lindsay Helen | Yap Von Bing | Ying Hua | Huttley Gavin
Volume: 4
Issue: 1
Year: 2009
Erwin Schroedinger, Francis Crick and epigenetic stability

Author(s): Ogryzko Vasily
Volume: 3
Issue: 1
Year: 2008
Endogenous retroviruses of the chicken genome

Author(s): Huda Ahsan | Polavarapu Nalini | Jordan I King | McDonald John
Volume: 3
Issue: 1
Year: 2008
Mathematical Biology in Biology Direct

Author(s): Yakovlev Andrei
Volume: 3
Issue: 1
Year: 2008
The intracellular region of Notch ligands: does the tail make the difference?

Author(s): Pintar Alessandro | De Biasio Alfredo | Popovic Matija | Ivanova Neli | Pongor Sándor
Volume: 2
Issue: 1
Year: 2007
A community experiment with fully open and published peer review

Author(s): Koonin Eugene | Landweber Laura | Lipman David
Volume: 1
Issue: 1
Year: 2006
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