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Immunome Research

ISSN: 1745--7580
Publisher: BioMed Central


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Concept and application of a computational vaccinology workflow

Author(s): Söllner Johannes | Heinzel Andreas | Summer Georg | Fechete Raul | Stipkovits Laszlo | Szathmary Susan | Mayer Bernd
Volume: 6
Issue: Suppl 2
Year: 2010
Applying bioinformatics for antibody epitope prediction using affinity-selected mimotopes – relevance for vaccine design

Author(s): Denisova Galina | Denisov Dimitri | Bramson Jonathan
Volume: 6
Issue: Suppl 2
Year: 2010
Recent advances in B-cell epitope prediction methods

Author(s): EL-Manzalawy Yasser | Honavar Vasant
Volume: 6
Issue: Suppl 2
Year: 2010
Computer aided selection of candidate vaccine antigens

Author(s): Flower Darren | Macdonald Isabel | Ramakrishnan Kamna | Davies Matthew | Doytchinova Irini
Volume: 6
Issue: Suppl 2
Year: 2010
Models of RNA virus evolution and their roles in vaccine design

Author(s): Ojosnegros Samuel | Beerenwinkel Niko
Volume: 6
Issue: Suppl 2
Year: 2010
T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges

Author(s): Flower Darren | Phadwal Kanchan | Macdonald Isabel | Coveney Peter | Davies Matthew | Wan Shunzhou
Volume: 6
Issue: Suppl 2
Year: 2010
State of the art and challenges in sequence based T-cell epitope prediction

Author(s): Lundegaard Claus | Hoof Ilka | Lund Ole | Nielsen Morten
Volume: 6
Issue: Suppl 2
Year: 2010
Expression analysis of G Protein-Coupled Receptors in mouse macrophages

Author(s): Lattin Jane | Schroder Kate | Su Andrew | Walker John | Zhang Jie | Wiltshire Tim | Saijo Kaoru | Glass Christopher | Hume David | Kellie Stuart | Sweet Matthew
Volume: 4
Issue: 1
Year: 2008
An analysis of the epitope knowledge related to Mycobacteria

Author(s): Blythe Martin | Zhang Qing | Vaughan Kerrie | de Castro Romulo | Salimi Nima | Bui Huynh-Hoa | Lewinsohn David | Ernst Joel | Peters Bjoern | Sette Alessandro
Volume: 3
Issue: 1
Year: 2007
Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins

Author(s): Sollner Johannes | Grohmann Rainer | Rapberger Ronald | Perco Paul | Lukas Arno | Mayer Bernd
Volume: 4
Issue: 1
Year: 2008
Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

Author(s): Sidney John | Assarsson Erika | Moore Carrie | Ngo Sandy | Pinilla Clemencia | Sette Alessandro | Peters Bjoern
Volume: 4
Issue: 1
Year: 2008
In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

Author(s): Tong Joo Chuan | Zhang Zong Hong | August J Thomas | Brusic Vladimir | Tan Tin Wee | Ranganathan Shoba
Volume: 3
Issue: 1
Year: 2007
Using the natural evolution of a rotavirus-specific human monoclonal antibody to predict the complex topography of a viral antigenic site

Author(s): McKinney Brett | Kallewaard Nicole | Crowe James | Meiler Jens
Volume: 3
Issue: 1
Year: 2007
IDR knowledge base for primary immunodeficiencies

Author(s): Samarghitean Crina | Väliaho Jouni | Vihinen Mauno
Volume: 3
Issue: 1
Year: 2007
A novel strategy for the identification of antigens that are recognised by bovine MHC class I restricted cytotoxic T cells in a protozoan infection using reverse vaccinology

Author(s): Graham Simon | Honda Yoshikazu | Pellé Roger | Mwangi Duncan | Glew E Jane | de Villiers Etienne | Shah Trushar | Bishop Richard | van der Bruggen Pierre | Nene Vishvanath | Taracha Evans
Volume: 3
Issue: 1
Year: 2007
In silico identification of opossum cytokine genes suggests the complexity of the marsupial immune system rivals that of eutherian mammals

Author(s): Wong Emily | Young Lauren | Papenfuss Anthony | Belov Katherine
Volume: 2
Issue: 1
Year: 2006
Improved method for predicting linear B-cell epitopes

Author(s): Larsen Jens | Lund Ole | Nielsen Morten
Volume: 2
Issue: 1
Year: 2006
Modeling the bound conformation of Pemphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles

Author(s): Tong Joo | Bramson Jeff | Kanduc Darja | Chow Selwyn | Sinha Animesh | Ranganathan Shoba
Volume: 2
Issue: 1
Year: 2006
Prediction of MHC class II binding peptides based on an iterative learning model

Author(s): Murugan Naveen | Dai Yang
Volume: 1
Issue: 1
Year: 2005
AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

Author(s): Toseland Christopher | Clayton Debra | McSparron Helen | Hemsley Shelley | Blythe Martin | Paine Kelly | Doytchinova Irini | Guan Pingping | Hattotuwagama Channa | Flower Darren
Volume: 1
Issue: 1
Year: 2005
An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities

Author(s): Sathiamurthy Muthuraman | Peters Bjoern | Bui Huynh-Hoa | Sidney John | Mokili John | Wilson Stephen | Fleri Ward | McGuinness Deborah | Bourne Philip | Sette Alessandro
Volume: 1
Issue: 1
Year: 2005
NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure

Author(s): Nielsen Morten | Justesen Sune | Lund Ole | Lundegaard Claus | Buus Søren
Volume: 6
Issue: 1
Year: 2010
Automated processing of label-free Raman microscope images of macrophage cells with standardized regression for high-throughput analysis

Author(s): Milewski Robert | Kumagai Yutaro | Fujita Katsumasa | Standley Daron | Smith Nicholas
Volume: 6
Issue: 1
Year: 2010
DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells

Author(s): Cavalieri Duccio | Rivero Damariz | Beltrame Luca | Buschow Sonja | Calura Enrica | Rizzetto Lisa | Gessani Sandra | Gauzzi Maria | Reith Walter | Baur Andreas | Bonaiuti Roberto | Brandizi Marco | De Filippo Carlotta | D'Oro Ugo | Draghici Sorin | Dunand-Sauthier Isabelle | Gatti Evelina | Granucci Francesca | Gündel Michaela | Kramer Matthijs | Kuka Mirela | Lanyi Arpad | Melief Cornelis | van Montfoort Nadine | Ostuni Renato | Pierre Philippe | Popovici Razvan | Rajnavolgyi Eva | Schierer Stephan | Schuler Gerold | Soumelis Vassili | Splendiani Andrea | Stefanini Irene | Torcia Maria | Zanoni Ivan | Zollinger Raphael | Figdor Carl | Austyn Jonathan
Volume: 6
Issue: 1
Year: 2010
Factors important in evolutionary shaping of immunoglobulin gene loci

Author(s): Barak Michal | Eilat Guy | Unger Ron | Mehr Ramit
Volume: 6
Issue: 1
Year: 2010
Polyfunctional CD4+ T cell responses to a set of pathogenic arenaviruses provide broad population coverage

Author(s): Kotturi Maya | Botten Jason | Maybeno Matt | Sidney John | Glenn Jean | Bui Huynh-Hoa | Oseroff Carla | Crotty Shane | Peters Bjoern | Grey Howard | Altmann Daniel | Buchmeier Michael | Sette Alessandro
Volume: 6
Issue: 1
Year: 2010
Coregulation mapping based on individual phenotypic variation in response to virus infection

Author(s): Nudelman German | Ge Yongchao | Hu Jianzhong | Kumar Madhu | Seto Jeremy | Duke Jamie | Kleinstein Steven | Hayot Fernand | Sealfon Stuart | Wetmur James
Volume: 6
Issue: 1
Year: 2010
A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY

Author(s): Pappalardo Francesco | Lefranc Marie-Paule | Lollini Pier-Luigi | Motta Santo
Volume: 6
Issue: 1
Year: 2010
Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS

Author(s): Ceppi Maurizio | Clavarino Giovanna | Gatti Evelina | Schmidt Enrico | de Gassart Aude | Blankenship Derek | Ogola Gerald | Banchereau Jacques | Chaussabel Damien | Pierre Philippe
Volume: 5
Issue: 1
Year: 2009
Critical role of glycosylation in determining the length and structure of T cell epitopes

Author(s): Szabó Tamás | Palotai Robin | Antal Péter | Tokatly Itay | Tóthfalusi László | Lund Ole | Nagy György | Falus András | Buzás Edit
Volume: 5
Issue: 1
Year: 2009
Functional recombinant MHC class II molecules and high-throughput peptide-binding assays

Author(s): Justesen Sune | Harndahl Mikkel | Lamberth Kasper | Nielsen Lise-Lotte | Buus Søren
Volume: 5
Issue: 1
Year: 2009
Data mining of cancer vaccine trials: a bird's-eye view

Author(s): Cao Xiaohong | Maloney Karen | Brusic Vladimir
Volume: 4
Issue: 1
Year: 2008
Identification of conformational B-cell Epitopes in an antigen from its primary sequence

Author(s): Ansari Hifzur | Raghava Gajendra
Volume: 6
Issue: 1
Year: 2010
Peptide length significantly influences in vitro affinity for MHC class II molecules

Author(s): O'Brien Cathal | Flower Darren | Feighery Conleth
Volume: 4
Issue: 1
Year: 2008
Efficiency of the immunome protein interaction network increases during evolution

Author(s): Ortutay Csaba | Vihinen Mauno
Volume: 4
Issue: 1
Year: 2008
Amino acid biophysical properties in the statistical prediction of peptide-MHC class I binding

Author(s): Ray Surajit | Kepler Thomas
Volume: 3
Issue: 1
Year: 2007
Protein sequence database for pathogenic arenaviruses

Author(s): Bui Huynh-Hoa | Botten Jason | Fusseder Nicolas | Pasquetto Valerie | Mothe Bianca | Buchmeier Michael | Sette Alessandro
Volume: 3
Issue: 1
Year: 2007
PREDTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing

Author(s): Zhang Guang | Petrovsky Nikolai | Kwoh Chee | August J Thomas | Brusic Vladimir
Volume: 2
Issue: 1
Year: 2006
Large-scale analysis of human heavy chain V(D)J recombination patterns

Author(s): Volpe Joseph | Kepler Thomas
Volume: 4
Issue: 1
Year: 2008
ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system

Author(s): Ortutay Csaba | Siermala Markku | Vihinen Mauno
Volume: 3
Issue: 1
Year: 2007
Modelling vaccination schedules for a cancer immunoprevention vaccine

Author(s): Motta Santo | Castiglione Filippo | Lollini Pierluigi | Pappalardo Francesco
Volume: 1
Issue: 1
Year: 2005
Immunome Research

Author(s): Petrovsky Nikolai
Volume: 1
Issue: 1
Year: 2005
Genetic correlates of autoreactivity and autoreactive potential in human Ig heavy chains

Author(s): Volpe Joseph | Kepler Thomas
Volume: 5
Issue: 1
Year: 2009
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