Academic Journals Database
Disseminating quality controlled scientific knowledge

Source Code for Biology and Medicine

ISSN: 1751--0473
Publisher: BioMed Central


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CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes

Author(s): Galardini Marco | Biondi Emanuele | Bazzicalupo Marco | Mengoni Alessio
Volume: 6
Issue: 1
Year: 2011
LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine

Author(s): Bath Timothy | Bozdag Selcuk | Afzal Vackar | Crowther Daniel
Volume: 6
Issue: 1
Year: 2011
KBWS: an EMBOSS associated package for accessing bioinformatics web services

Author(s): Oshita Kazuki | Arakawa Kazuharu | Tomita Masaru
Volume: 6
Issue: 1
Year: 2011
A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks

Author(s): Kyoda Koji | Baba Kotaro | Kitano Hiroaki | Onami Shuichi
Volume: 6
Issue: 1
Year: 2011
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text

Author(s): Baroukh Caroline | Jenkins Sherry | Dannenfelser Ruth | Ma'ayan Avi
Volume: 6
Issue: 1
Year: 2011
SNIT: SNP identification for strain typing

Author(s): Vijaya Satya Ravi | Zavaljevski Nela | Reifman Jaques
Volume: 6
Issue: 1
Year: 2011
Nephele: genotyping via complete composition vectors and MapReduce

Author(s): Colosimo Marc | Peterson Matthew | Mardis Scott | Hirschman Lynette
Volume: 6
Issue: 1
Year: 2011
Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules

Author(s): Muhonen Pirkko | Parthasarathy Ranga | Janckila Anthony | Büki Kalman | Väänänen H Kalervo
Volume: 3
Issue: 1
Year: 2008
A Perl toolkit for LIMS development

Author(s): Morris James | Gayther Simon | Jacobs Ian | Jones Christopher
Volume: 3
Issue: 1
Year: 2008
Bioinformatics process management: information flow via a computational journal

Author(s): Feagan Lance | Rohrer Justin | Garrett Alexander | Amthauer Heather | Komp Ed | Johnson David | Hock Adam | Clark Terry | Lushington Gerald | Minden Gary | Frost Victor
Volume: 2
Issue: 1
Year: 2007
NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks

Author(s): Baker Erich | Lin Guan | Liu Huadong | Kosuri Ravi
Volume: 2
Issue: 1
Year: 2007
TreeViewJ: An application for viewing and analyzing phylogenetic trees

Author(s): Peterson Matthew | Colosimo Marc
Volume: 2
Issue: 1
Year: 2007
OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences

Author(s): Liu Guozhen | Uddin Monica | Islam Munirul | Goodman Morris | Grossman Lawrence | Romero Roberto | Wildman Derek
Volume: 2
Issue: 1
Year: 2007
PatentMatrix: an automated tool to survey patents related to large sets of genes or proteins

Author(s): Lahm Armin | de Rinaldis Emanuele
Volume: 2
Issue: 1
Year: 2007
The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures

Author(s): Ceroni Alessio | Dell Anne | Haslam Stuart
Volume: 2
Issue: 1
Year: 2007
HitKeeper, a generic software package for hit list management

Author(s): Hau Jörg | Muller Michael | Pagni Marco
Volume: 2
Issue: 1
Year: 2007
Genome display tool: visualizing features in complex data sets

Author(s): Viswanath Lalitha | Lu Yue | Fox George
Volume: 2
Issue: 1
Year: 2007
Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format

Author(s): Webb Ryan | Ma'ayan Avi
Volume: 6
Issue: 1
Year: 2011
SAMMate: a GUI tool for processing short read alignments in SAM/BAM format

Author(s): Xu Guorong | Deng Nan | Zhao Zhiyu | Judeh Thair | Flemington Erik | Zhu Dongxiao
Volume: 6
Issue: 1
Year: 2011
IHE cross-enterprise document sharing for imaging: interoperability testing software

Author(s): Noumeir Rita | Renaud Bérubé
Volume: 5
Issue: 1
Year: 2010
Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information

Author(s): Pedamallu Chandra Sekhar | Posfai Janos
Volume: 5
Issue: 1
Year: 2010
EntrezAJAX: direct web browser access to the Entrez Programming Utilities

Author(s): Loman Nicholas | Pallen Mark
Volume: 5
Issue: 1
Year: 2010
VersaCount: customizable manual tally software for cell counting

Author(s): Kim Charles | DeRisi Joseph
Volume: 5
Issue: 1
Year: 2010
HAMSTER: visualizing microarray experiments as a set of minimum spanning trees

Author(s): Wan Raymond | Kiseleva Larisa | Harada Hajime | Mamitsuka Hiroshi | Horton Paul
Volume: 4
Issue: 1
Year: 2009
ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing

Author(s): Misawa Kazuharu | Kamatani Naoyuki
Volume: 4
Issue: 1
Year: 2009
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format

Author(s): Krawczyk Justina | Goesmann Alexander | Nolte Ralf | Werber Martin | Weisshaar Bernd
Volume: 4
Issue: 1
Year: 2009
Motmot, an open-source toolkit for realtime video acquisition and analysis

Author(s): Straw Andrew | Dickinson Michael
Volume: 4
Issue: 1
Year: 2009
A software pipeline for processing and identification of fungal ITS sequences

Author(s): Nilsson R Henrik | Bok Gunilla | Ryberg Martin | Kristiansson Erik | Hallenberg Nils
Volume: 4
Issue: 1
Year: 2009
Purposeful selection of variables in logistic regression

Author(s): Bursac Zoran | Gauss C Heath | Williams David Keith | Hosmer David
Volume: 3
Issue: 1
Year: 2008
Permutation – based statistical tests for multiple hypotheses

Author(s): Camargo Anyela | Azuaje Francisco | Wang Haiying | Zheng Huiru
Volume: 3
Issue: 1
Year: 2008
Creating web applications for spatial epidemiological analysis and mapping in R using Rwui

Author(s): Newton Richard | Deonarine Andrew | Wernisch Lorenz
Volume: 6
Issue: 1
Year: 2011
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks

Author(s): Oesper Layla | Merico Daniele | Isserlin Ruth | Bader Gary
Volume: 6
Issue: 1
Year: 2011
DOG-SPOT database for comprehensive management of dog genetic research data

Author(s): Powell Julie | Allen Jeremy | Sutter Nathan
Volume: 5
Issue: 1
Year: 2010
WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results

Author(s): Joshi Vineet | Freudenberg Johannes | Hu Zhen | Medvedovic Mario
Volume: 6
Issue: 1
Year: 2011
A web server for interactive and zoomable Chaos Game Representation images

Author(s): Arakawa Kazuharu | Oshita Kazuki | Tomita Masaru
Volume: 4
Issue: 1
Year: 2009
Wndchrm – an open source utility for biological image analysis

Author(s): Shamir Lior | Orlov Nikita | Eckley D Mark | Macura Tomasz | Johnston Josiah | Goldberg Ilya
Volume: 3
Issue: 1
Year: 2008
FASH: A web application for nucleotides sequence search

Author(s): Veksler-Lublinksy Isana | Barash Danny | Avisar Chai | Troim Einav | Chew Paul | Kedem Klara
Volume: 3
Issue: 1
Year: 2008
Boolean network simulations for life scientists

Author(s): Albert István | Thakar Juilee | Li Song | Zhang Ranran | Albert Réka
Volume: 3
Issue: 1
Year: 2008
Epigrass: a tool to study disease spread in complex networks

Author(s): Coelho Flávio | Cruz Oswaldo | Codeço Cláudia
Volume: 3
Issue: 1
Year: 2008
LSID Tester, a tool for testing Life Science Identifier resolution services

Author(s): Page Roderic
Volume: 3
Issue: 1
Year: 2008
Faunus: An object oriented framework for molecular simulation

Author(s): Lund Mikael | Trulsson Martin | Persson Björn
Volume: 3
Issue: 1
Year: 2008
Pspace: a program that assesses protein space

Author(s): Mezei Mihaly | Zhou Ming-Ming
Volume: 2
Issue: 1
Year: 2007
OSPACS: Ultrasound image management system

Author(s): Stott Will | Ryan Andy | Jacobs Ian | Menon Usha | Bessant Conrad | Jones Christopher
Volume: 3
Issue: 1
Year: 2008
The Multiscale Systems Immunology project: software for cell-based immunological simulation

Author(s): Mitha Faheem | Lucas Timothy | Feng Feng | Kepler Thomas | Chan Cliburn
Volume: 3
Issue: 1
Year: 2008
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data

Author(s): Parker Nicolas | Parker Andrew
Volume: 3
Issue: 1
Year: 2008
Parallel biocomputing

Author(s): Kompass Kenneth | Hoffmann Thomas | Witte John
Volume: 6
Issue: 1
Year: 2011
Tools for efficient epistasis detection in genome-wide association study

Author(s): Zhang Xiang | Huang Shunping | Zou Fei | Wang Wei
Volume: 6
Issue: 1
Year: 2011
MADAM - An open source meta-analysis toolbox for R and Bioconductor

Author(s): Kugler Karl | Mueller Laurin | Graber Armin
Volume: 5
Issue: 1
Year: 2010
Dockres: a computer program that analyzes the output of virtual screening of small molecules

Author(s): Mezei Mihaly | Zhou Ming-Ming
Volume: 5
Issue: 1
Year: 2010
KinImmerse: Macromolecular VR for NMR ensembles

Author(s): Block Jeremy | Zielinski David | Chen Vincent | Davis Ian | Vinson E Claire | Brady Rachael | Richardson Jane | Richardson David
Volume: 4
Issue: 1
Year: 2009
GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction

Author(s): Browne Fiona | Wang Haiying | Zheng Huiru | Azuaje Francisco
Volume: 4
Issue: 1
Year: 2009
GTC: A web server for integrating systems biology data with web tools and desktop applications

Author(s): Tenenbaum Dan | Bare J Christopher | Baliga Nitin
Volume: 5
Issue: 1
Year: 2010
Flow: Statistics, visualization and informatics for flow cytometry

Author(s): Frelinger Jacob | Kepler Thomas | Chan Cliburn
Volume: 3
Issue: 1
Year: 2008
CRANKITE: A fast polypeptide backbone conformation sampler

Author(s): Podtelezhnikov Alexei | Wild David
Volume: 3
Issue: 1
Year: 2008
The MERG Suite: Tools for discovering competencies and associated learning resources

Author(s): Bhupatiraju Ravi | Hersh William | Smothers Valerie | Fordis Michael | Greene Peter
Volume: 3
Issue: 1
Year: 2008
Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis

Author(s): Scaria Joy | Sreedharan Aswathy | Chang Yung-Fu
Volume: 3
Issue: 1
Year: 2008
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