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BMC Medical Genomics

ISSN: 1755--8794
Publisher: BioMed Central


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Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data

Author(s): Teng Shaolei | Yang Jack Y | Wang Liangjiang
Volume: 6
Issue: Suppl 1
Year: 2013
A novel method for finding non-small cell lung cancer diagnosis biomarkers

Author(s): Tran Quoc-Nam
Volume: 6
Issue: Suppl 1
Year: 2013
Integrated lipidomics and transcriptomic analysis of peripheral blood reveals significantly enriched pathways in type 2 diabetes mellitus

Author(s): Zhao Chen | Mao Jinghe | Ai Junmei | Shenwu Ming | Shi Tieliu | Zhang Daqing | Wang Xiaonan | Wang Yunliang | Deng Youping
Volume: 6
Issue: Suppl 1
Year: 2013
CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome

Author(s): Zheng Hao | Wu Hongwei | Li Jinping | Jiang Shi-Wen
Volume: 6
Issue: Suppl 1
Year: 2013
A novel method for the normalization of microRNA RT-PCR data

Author(s): Qureshi Rehman | Sacan Ahmet
Volume: 6
Issue: Suppl 1
Year: 2013
Development of a novel DNA sequencing method not only for hepatitis B virus genotyping but also for drug resistant mutation detection

Author(s): Wang Fanjun | Lu Lili | Yu Changshun | Lv Zhanwu | Luo Xuelian | Wan Chao | Hu Zhaohui | Zhu Qinyi | Deng Youping | Zhang Chuyu
Volume: 6
Issue: Suppl 1
Year: 2013
HDAM: a resource of human disease associated mutations from next generation sequencing studies

Author(s): Jia Meiwei | Liu Yanli | Shen Zhongchao | Zhao Chen | Zhang Meixia | Yi Zhenghui | Wen Chengping | Deng Youping | Shi Tieliu
Volume: 6
Issue: Suppl 1
Year: 2013
Exploring the pathogenetic association between schizophrenia and type 2 diabetes mellitus diseases based on pathway analysis

Author(s): Liu Yanli | Li Zezhi | Zhang Meixia | Deng Youping | Yi Zhenghui | Shi Tieliu
Volume: 6
Issue: Suppl 1
Year: 2013
The current trend of genomics research for human diseases

Author(s): Zhang Ke K | Arabnia Hamid R | Wang Yunliang | Deng Youping
Volume: 6
Issue: Suppl 1
Year: 2013
Short and long term gene expression variation and networking in human proximal tubule cells when exposed to cadmium

Author(s): Garrett Scott H | Clarke Kaitlin | Sens Donald A | Deng Youping | Somji Seema | Zhang Ke K
Volume: 6
Issue: Suppl 1
Year: 2013
TSG: a new algorithm for binary and multi-class cancer classification and informative genes selection

Author(s): Wang Haiyan | Zhang Hongyan | Dai Zhijun | Chen Ming-shun | Yuan Zheming
Volume: 6
Issue: Suppl 1
Year: 2013
Recursive SVM biomarker selection for early detection of breast cancer in peripheral blood

Author(s): Zhang Fan | Kaufman Howard L | Deng Youping | Drabier Renee
Volume: 6
Issue: Suppl 1
Year: 2013
Identification of regulatory regions of bidirectional genes in cervical cancer

Author(s): Wang Guohua | Qi Ke | Zhao Yuming | Li Yu | Juan Liran | Teng Mingxiang | Li Lang | Liu Yunlong | Wang Yadong
Volume: 6
Issue: Suppl 1
Year: 2013
Breast cancer subtyping from plasma proteins

Author(s): Zhang Fan | Chen Jake Y
Volume: 6
Issue: Suppl 1
Year: 2013
Potential roles of microRNAs in regulating long intergenic noncoding RNAs

Author(s): Juan Liran | Wang Guohua | Radovich Milan | Schneider Bryan P | Clare Susan E | Wang Yadong | Liu Yunlong
Volume: 6
Issue: Suppl 1
Year: 2013
Assessment of gene order computing methods for Alzheimer's disease

Author(s): Hu Benqiong | Jiang Gang | Pang Chaoyang | Wang Shipeng | Liu Qingzhong | Chen Zhongxue | Vanderburg Charles R | Rogers Jack T | Deng Youping | Huang Xudong
Volume: 6
Issue: Suppl 1
Year: 2013
Detecting differentially methylated loci for Illumina Array methylation data based on human ovarian cancer data

Author(s): Chen Zhongxue | Huang Hanwen | Liu Jianzhong | Tony Ng Hon | Nadarajah Saralees | Huang Xudong | Deng Youping
Volume: 6
Issue: Suppl 1
Year: 2013
SEURAT: Visual analytics for the integrated analysis of microarray data

Author(s): Gribov Alexander | Sill Martin | Lück Sonja | Rücker Frank | Döhner Konstanze | Bullinger Lars | Benner Axel | Unwin Antony
Volume: 3
Issue: 1
Year: 2010
Genotyping panel for assessing response to cancer chemotherapy

Author(s): Dai Zunyan | Papp Audrey | Wang Danxin | Hampel Heather | Sadee Wolfgang
Volume: 1
Issue: 1
Year: 2008
Tobacco use induces anti-apoptotic, proliferative patterns of gene expression in circulating leukocytes of Caucasian males

Author(s): Charles Peter | Alder Brian | Hilliard Eleanor | Schisler Jonathan | Lineberger Robert | Parker Joel | Mapara Sabeen | Wu Samuel | Portbury Andrea | Patterson Cam | Stouffer George
Volume: 1
Issue: 1
Year: 2008
New Jersey Center for Tourette Syndrome Sharing Repository: methods and sample description

Author(s): Heiman Gary | King Robert | Tischfield Jay
Volume: 1
Issue: 1
Year: 2008
Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age

Author(s): Lee Yohan | Scheck Adrienne | Cloughesy Timothy | Lai Albert | Dong Jun | Farooqi Haumith | Liau Linda | Horvath Steve | Mischel Paul | Nelson Stanley
Volume: 1
Issue: 1
Year: 2008
Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis

Author(s): Tomazou Eleni | Rakyan Vardhman | Lefebvre Gregory | Andrews Robert | Ellis Peter | Jackson David | Langford Cordelia | Francis Matthew | Bäckdahl Liselotte | Miretti Marcos | Coggill Penny | Ottaviani Diego | Sheer Denise | Murrell Adele | Beck Stephan
Volume: 1
Issue: 1
Year: 2008
Pathway analysis reveals functional convergence of gene expression profiles in breast cancer

Author(s): Shen Ronglai | Chinnaiyan Arul | Ghosh Debashis
Volume: 1
Issue: 1
Year: 2008
My sister's keeper?: genomic research and the identifiability of siblings

Author(s): Cassa Christopher | Schmidt Brian | Kohane Isaac | Mandl Kenneth
Volume: 1
Issue: 1
Year: 2008
The A's, G's, C's, and T's of health disparities

Author(s): Ramos Edward | Rotimi Charles
Volume: 2
Issue: 1
Year: 2009
PrognoScan: a new database for meta-analysis of the prognostic value of genes

Author(s): Mizuno Hideaki | Kitada Kunio | Nakai Kenta | Sarai Akinori
Volume: 2
Issue: 1
Year: 2009
Identification of microbial DNA in human cancer

Author(s): Duncan Christopher | Leary Rebecca | Lin Jimmy | Cummins Jordan | Di Chunhui | Schaefer Carl | Wang Tian-Li | Riggins Gregory | Edwards Jennifer | Bigner Darell | Kopelovich Levy | Vogelstein Bert | Kinzler Kenneth | Velculescu Victor | Yan Hai
Volume: 2
Issue: 1
Year: 2009
Human difference in the genomic era: Facilitating a socially responsible dialogue

Author(s): Knerr Sarah | Ramos Edward | Nowinski Juleigh | Dixon Keianna | Bonham Vence
Volume: 3
Issue: 1
Year: 2010
Co-regulatory expression quantitative trait loci mapping: method and application to endometrial cancer

Author(s): Kompass Kenneth | Witte John
Volume: 4
Issue: 1
Year: 2011
EMT is the dominant program in human colon cancer

Author(s): Loboda Andre | Nebozhyn Michael | Watters James | Buser Carolyne | Shaw Peter | Huang Pearl | Van't Veer Laura | Tollenaar Rob | Jackson David | Agrawal Deepak | Dai Hongyue | Yeatman Timothy
Volume: 4
Issue: 1
Year: 2011
A network-based biomarker approach for molecular investigation and diagnosis of lung cancer

Author(s): Wang Yu-Chao | Chen Bor-Sen
Volume: 4
Issue: 1
Year: 2011
Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study

Author(s): Wineinger Nathan | Patki Amit | Meyers Kristin | Broeckel Ulrich | Gu Charles | Rao DC | Devereux Richard | Arnett Donna | Tiwari Hemant
Volume: 4
Issue: 1
Year: 2011
Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data

Author(s): Liu Jiangang | Campen Andrew | Huang Shuguang | Peng Sheng-Bin | Ye Xiang | Palakal Mathew | Dunker A Keith | Xia Yuni | Li Shuyu
Volume: 1
Issue: 1
Year: 2008
A systems biology approach to construct the gene regulatory network of systemic inflammation via microarray and databases mining

Author(s): Chen Bor-Sen | Yang Shih-Kuang | Lan Chung-Yu | Chuang Yung-Jen
Volume: 1
Issue: 1
Year: 2008
DNA methylation changes in ovarian cancer are cumulative with disease progression and identify tumor stage

Author(s): Watts George | Futscher Bernard | Holtan Nicholas | DeGeest Koen | Domann Frederick | Rose Stephen
Volume: 1
Issue: 1
Year: 2008
Transcriptomic signature of Bexarotene (Rexinoid LGD1069) on mammary gland from three transgenic mouse mammary cancer models

Author(s): Abba Martin | Hu Yuhui | Levy Carla | Gaddis Sally | Kittrell Frances | Zhang Yun | Hill Jamal | Bissonnette Reid | Medina Daniel | Brown Powel | Marcelo Aldaz C
Volume: 1
Issue: 1
Year: 2008
A high confidence, manually validated human blood plasma protein reference set

Author(s): Schenk Susann | Schoenhals Gary | de Souza Gustavo | Mann Matthias
Volume: 1
Issue: 1
Year: 2008
The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets – improving meta-analysis and prediction of prognosis

Author(s): Sims Andrew | Smethurst Graeme | Hey Yvonne | Okoniewski Michal | Pepper Stuart | Howell Anthony | Miller Crispin | Clarke Robert
Volume: 1
Issue: 1
Year: 2008
Gene expression in BMPR2 mutation carriers with and without evidence of Pulmonary Arterial Hypertension suggests pathways relevant to disease penetrance

Author(s): West James | Cogan Joy | Geraci Mark | Robinson Linda | Newman John | Phillips John | Lane Kirk | Meyrick Barbara | Loyd Jim
Volume: 1
Issue: 1
Year: 2008
Regulatory subunits of PKA define an axis of cellular proliferation/differentiation in ovarian cancer cells

Author(s): Cheadle Chris | Nesterova Maria | Watkins Tonya | Barnes Kathleen | Hall John | Rosen Antony | Becker Kevin | Cho-Chung Yoon
Volume: 1
Issue: 1
Year: 2008
The molecular basis of genistein-induced mitotic arrest and exit of self-renewal in embryonal carcinoma and primary cancer cell lines

Author(s): Regenbrecht Christian | Jung Marc | Lehrach Hans | Adjaye James
Volume: 1
Issue: 1
Year: 2008
A genome-wide association study for late-onset Alzheimer's disease using DNA pooling

Author(s): Abraham Richard | Moskvina Valentina | Sims Rebecca | Hollingworth Paul | Morgan Angharad | Georgieva Lyudmila | Dowzell Kimberley | Cichon Sven | Hillmer Axel | O'Donovan Michael | Williams Julie | Owen Michael | Kirov George
Volume: 1
Issue: 1
Year: 2008
Multiplex ligation-dependent probe amplification for genetic screening in autism spectrum disorders: Efficient identification of known microduplications and identification of a novel microduplication in ASMT

Author(s): Cai Guiqing | Edelmann Lisa | Goldsmith Juliet | Cohen Ninette | Nakamine Alisa | Reichert Jennifer | Hoffman Ellen | Zurawiecki Danielle | Silverman Jeremy | Hollander Eric | Soorya Latha | Anagnostou Evdokia | Betancur Catalina | Buxbaum Joseph
Volume: 1
Issue: 1
Year: 2008
Expression-based Pathway Signature Analysis (EPSA): Mining publicly available microarray data for insight into human disease

Author(s): Tenenbaum Jessica | Walker Michael | Utz Paul | Butte Atul
Volume: 1
Issue: 1
Year: 2008
The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile

Author(s): Kon Oi | Yip Tai-Tung | Ho Meng | Chan Weng | Wong Wai | Tan Soo | Ng Wai | Kam Siok | Eng Alvin | Ho Patrick | Viner Rosa | Ong Hock | Kumarasinghe M Priyanthi
Volume: 1
Issue: 1
Year: 2008
Discovery of DNA methylation markers in cervical cancer using relaxation ranking

Author(s): Ongenaert Maté | Wisman G Bea | Volders Haukeline | Koning Alice | Zee Ate | van Criekinge Wim | Schuuring Ed
Volume: 1
Issue: 1
Year: 2008
A global transcriptional view of apoptosis in human T-cell activation

Author(s): Wang Min | Windgassen Dirk | Papoutsakis Eleftherios
Volume: 1
Issue: 1
Year: 2008
Carboplatin-induced gene expression changes in vitro are prognostic of survival in epithelial ovarian cancer

Author(s): Konstantinopoulos Panagiotis | Fountzilas Elena | Pillay Kamana | Zerbini Luiz | Libermann Towia | Cannistra Stephen | Spentzos Dimitrios
Volume: 1
Issue: 1
Year: 2008
Pathways affected by asbestos exposure in normal and tumour tissue of lung cancer patients

Author(s): Ruosaari Salla | Hienonen-Kempas Tuija | Puustinen Anne | Sarhadi Virinder | Hollmén Jaakko | Knuutila Sakari | Saharinen Juha | Wikman Harriet | Anttila Sisko
Volume: 1
Issue: 1
Year: 2008
Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries

Author(s): Silveira Nelson | Varuzza Leonardo | Machado-Lima Ariane | Lauretto Marcelo | Pinheiro Daniel | Rodrigues Rodrigo | Severino Patrícia | Nobrega Francisco | Silva Wilson | de B Pereira Carlos | Tajara Eloiza
Volume: 1
Issue: 1
Year: 2008
Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes

Author(s): Bonifaci Núria | Berenguer Antoni | Díez Javier | Reina Oscar | Medina Ignacio | Dopazo Joaquín | Moreno Víctor | Pujana Miguel
Volume: 1
Issue: 1
Year: 2008
Complex nature of SNP genotype effects on gene expression in primary human leucocytes

Author(s): Heap Graham | Trynka Gosia | Jansen Ritsert | Bruinenberg Marcel | Swertz Morris | Dinesen Lotte | Hunt Karen | Wijmenga Cisca | vanHeel David | Franke Lude
Volume: 2
Issue: 1
Year: 2009
Global gene expression analyses of bystander and alpha particle irradiated normal human lung fibroblasts: Synchronous and differential responses

Author(s): Ghandhi Shanaz | Yaghoubian Benjamin | Amundson Sally
Volume: 1
Issue: 1
Year: 2008
Detailed transcriptome atlas of the pancreatic beta cell

Author(s): Kutlu Burak | Burdick David | Baxter David | Rasschaert Joanne | Flamez Daisy | Eizirik Decio | Welsh Nils | Goodman Nathan | Hood Leroy
Volume: 2
Issue: 1
Year: 2009
Monocytes of patients with familial hypercholesterolemia show alterations in cholesterol metabolism

Author(s): Mosig Sandy | Rennert Knut | Büttner Petra | Krause Siegfried | Lütjohann Dieter | Soufi Muhidien | Heller Regine | Funke Harald
Volume: 1
Issue: 1
Year: 2008
Genomic selection of reference genes for real-time PCR in human myocardium

Author(s): Pilbrow Anna | Ellmers Leigh | Black Michael | Moravec Christine | Sweet Wendy | Troughton Richard | Richards A Mark | Frampton Chris | Cameron Vicky
Volume: 1
Issue: 1
Year: 2008
Gene expression profile analysis of human hepatocellular carcinoma using SAGE and LongSAGE

Author(s): Dong Hui | Ge Xijin | Shen Yan | Chen Linlei | Kong Yalin | Zhang Hongyi | Man Xiaobo | Tang Liang | Yuan Hong | Wang Hongyang | Zhao Guoping | Jin Weirong
Volume: 2
Issue: 1
Year: 2009
Validation of previously identified serum biomarkers for breast cancer with SELDI-TOF MS: a case control study

Author(s): van Winden Annemieke | Gast Marie-Christine | Beijnen Jos | Rutgers Emiel | Grobbee Diederick | Peeters Petra | van Gils Carla
Volume: 2
Issue: 1
Year: 2009
Transcriptional profiling of mycobacterial antigen-induced responses in infants vaccinated with BCG at birth

Author(s): Fletcher Helen | Keyser Alana | Bowmaker Mark | Sayles Peter | Kaplan Gilla | Hussey Greg | Hill Adrian | Hanekom Willem
Volume: 2
Issue: 1
Year: 2009
High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarrays

Author(s): Wang Yuker | Carlton Victoria | Karlin-Neumann George | Sapolsky Ronald | Zhang Li | Moorhead Martin | Wang Zhigang | Richardson Andrea | Warren Robert | Walther Axel | Bondy Melissa | Sahin Aysegul | Krahe Ralf | Tuna Musaffe | Thompson Patricia | Spellman Paul | Gray Joe | Mills Gordon | Faham Malek
Volume: 2
Issue: 1
Year: 2009
Disease-associated pathophysiologic structures in pediatric rheumatic diseases show characteristics of scale-free networks seen in physiologic systems: implications for pathogenesis and treatment

Author(s): Frank Mark | Wang Shirley | Aggarwal Amita | Knowlton Nicholas | Jiang Kaiyu | Chen Yanmin | McKee Ryan | Chaser Brad | McGhee Timothy | Osban Jeanette | Jarvis James
Volume: 2
Issue: 1
Year: 2009
Diurnal variation of the human adipose transcriptome and the link to metabolic disease

Author(s): Loboda Andrey | Kraft Walter | Fine Bernard | Joseph Jeffrey | Nebozhyn Michael | Zhang Chunsheng | He Yudong | Yang Xia | Wright Christopher | Morris Mark | Chalikonda Ira | Ferguson Mark | Emilsson Valur | Leonardson Amy | Lamb John | Dai Hongyue | Schadt Eric | Greenberg Howard | Lum Pek
Volume: 2
Issue: 1
Year: 2009
Impact of sample acquisition and linear amplification on gene expression profiling of lung adenocarcinoma: laser capture micro-dissection cell-sampling versus bulk tissue-sampling

Author(s): Klee Eric | Erdogan Sibel | Tillmans Lori | Kosari Farhad | Sun Zhifu | Wigle Dennis | Yang Ping | Aubry Marie | Vasmatzis George
Volume: 2
Issue: 1
Year: 2009
Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis

Author(s): Guimbellot Jennifer | Erickson Stephen | Mehta Tapan | Wen Hui | Page Grier | Sorscher Eric | Hong Jeong
Volume: 2
Issue: 1
Year: 2009
Promoter methylation correlates with reduced NDRG2 expression in advanced colon tumour

Author(s): Piepoli Ada | Cotugno Rosa | Merla Giuseppe | Gentile Annamaria | Augello Bartolomeo | Quitadamo Michele | Merla Antonio | Panza Anna | Carella Massimo | Maglietta Rosalia | D'Addabbo Annarita | Ancona Nicola | Fusilli Saverio | Perri Francesco | Andriulli Angelo
Volume: 2
Issue: 1
Year: 2009
Muscle Research and Gene Ontology: New standards for improved data integration

Author(s): Feltrin Erika | Campanaro Stefano | Diehl Alexander | Ehler Elisabeth | Faulkner Georgine | Fordham Jennifer | Gardin Chiara | Harris Midori | Hill David | Knoell Ralph | Laveder Paolo | Mittempergher Lorenza | Nori Alessandra | Reggiani Carlo | Sorrentino Vincenzo | Volpe Pompeo | Zara Ivano | Valle Giorgio | Deegan née Clark Jennifer
Volume: 2
Issue: 1
Year: 2009
Impaired immune function in Gulf War Illness

Author(s): Whistler Toni | Fletcher Mary | Lonergan William | Zeng Xiao-R | Lin Jin-Mann | LaPerriere Arthur | Vernon Suzanne | Klimas Nancy
Volume: 2
Issue: 1
Year: 2009
Distinct gene subsets in pterygia formation and recurrence: dissecting complex biological phenomenon using genome wide expression data

Author(s): Tong Louis | Chew Jaime | Yang Henry | Ang Leonard | Tan Donald | Beuerman Roger
Volume: 2
Issue: 1
Year: 2009
Complexity in the genetic architecture of leukoaraiosis in hypertensive sibships from the GENOA Study

Author(s): Smith Jennifer | Turner Stephen | Sun Yan | Fornage Myriam | Kelly Reagan | Mosley Thomas | Jack Clifford | Kullo Iftikhar | Kardia Sharon
Volume: 2
Issue: 1
Year: 2009
Gene expression profiling identifies activated growth factor signaling in poor prognosis (Luminal-B) estrogen receptor positive breast cancer

Author(s): Loi Sherene | Sotiriou Christos | Haibe-Kains Benjamin | Lallemand Francoise | Conus Nelly | Piccart Martine | Speed Terence | McArthur Grant
Volume: 2
Issue: 1
Year: 2009
Network analysis of human glaucomatous optic nerve head astrocytes

Author(s): Nikolskaya Tatiana | Nikolsky Yuri | Serebryiskaya Tatiana | Zvereva Svetlana | Sviridov Eugene | Dezso Zoltan | Rahkmatulin Eugene | Brennan Richard | Yankovsky Nick | Bhattacharya Sanjoy | Agapova Olga | Hernandez M Rosario | Shestopalov Valery
Volume: 2
Issue: 1
Year: 2009
Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck

Author(s): Wilting Saskia | Smeets Serge | Snijders Peter | van Wieringen Wessel | van de Wiel Mark | Meijer Gerrit | Ylstra Bauke | Leemans C René | Meijer Chris | Brakenhoff Ruud | Braakhuis Boudewijn | Steenbergen Renske
Volume: 2
Issue: 1
Year: 2009
Hypermethylation of genomic 3.3-kb repeats is frequent event in HPV-positive cervical cancer

Author(s): Katargin Alexey | Pavlova Larissa | Kisseljov Fjodor | Kisseljova Natalia
Volume: 2
Issue: 1
Year: 2009
High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors

Author(s): Haverty Peter | Hon Lawrence | Kaminker Joshua | Chant John | Zhang Zemin
Volume: 2
Issue: 1
Year: 2009
Microarray analysis of RNA extracted from formalin-fixed, paraffin-embedded and matched fresh-frozen ovarian adenocarcinomas

Author(s): Fedorowicz Grazyna | Guerrero Steve | Wu Thomas | Modrusan Zora
Volume: 2
Issue: 1
Year: 2009
Similar gene expression profiles of sporadic, PGL2-, and SDHD-linked paragangliomas suggest a common pathway to tumorigenesis

Author(s): Hensen Erik | Goeman Jelle | Oosting Jan | Van der Mey Andel | Hogendoorn Pancras | Cremers Cor | Devilee Peter | Cornelisse Cees
Volume: 2
Issue: 1
Year: 2009
Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs

Author(s): Evans Perry | Dampier William | Ungar Lyle | Tozeren Aydin
Volume: 2
Issue: 1
Year: 2009
Gene expression in the prefrontal cortex during adolescence: implications for the onset of schizophrenia

Author(s): Harris Laura | Lockstone Helen | Khaitovich Phillipp | Weickert Cynthia | Webster Maree | Bahn Sabine
Volume: 2
Issue: 1
Year: 2009
Data integration from two microarray platforms identifies bi-allelic genetic inactivation of RIC8A in a breast cancer cell line

Author(s): Muggerud Aslaug | Edgren Henrik | Wolf Maija | Kleivi Kristine | Dejeux Emelyne | Tost Jörg | Sørlie Therese | Kallioniemi Olli
Volume: 2
Issue: 1
Year: 2009
Development of a fingerprinting panel using medically relevant polymorphisms

Author(s): Cross Deanna | Ivacic Lynn | McCarty Catherine
Volume: 2
Issue: 1
Year: 2009
Tamoxifen-elicited uterotrophy: cross-species and cross-ligand analysis of the gene expression program

Author(s): Kwekel Joshua | Forgacs Agnes | Burgoon Lyle | Williams Kurt | Zacharewski Timothy
Volume: 2
Issue: 1
Year: 2009
The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma

Author(s): Di Pietro Cinzia | Ragusa Marco | Barbagallo Davide | Duro Laura | Guglielmino Maria | Majorana Alessandra | Angelica Rosario | Scalia Marina | Statello Luisa | Salito Loredana | Tomasello Luisa | Pernagallo Salvo | Valenti Salvo | D'Agostino Vito | Triberio Patrizio | Tandurella Igor | Palumbo Giuseppe | La Cava Piera | Cafiso Viviana | Bertuccio Taschia | Santagati Maria | Li Destri Giovanni | Lanzafame Salvatore | Di Raimondo Francesco | Stefani Stefania | Mishra Bud | Purrello Michele
Volume: 2
Issue: 1
Year: 2009
An assessment of the portability of ancestry informative markers between human populations

Author(s): Myles Sean | Stoneking Mark | Timpson Nic
Volume: 2
Issue: 1
Year: 2009
Functional annotations of diabetes nephropathy susceptibility loci through analysis of genome-wide renal gene expression in rat models of diabetes mellitus

Author(s): Hu Yaomin | Kaisaki Pamela | Argoud Karène | Wilder Steven | Wallace Karin | Woon Peng | Blancher Christine | Tarnow Lise | Groop Per-Henrik | Hadjadj Samy | Marre Michel | Parving Hans-Henrik | Farrall Martin | Cox Roger | Lathrop Mark | Vionnet Nathalie | Bihoreau Marie-Thérèse | Gauguier Dominique
Volume: 2
Issue: 1
Year: 2009
Finding exclusively deleted or amplified genomic areas in lung adenocarcinomas using a novel chromosomal pattern analysis

Author(s): Broët Philippe | Tan Patrick | Alifano Marco | Camilleri-Broët Sophie | Richardson Sylvia
Volume: 2
Issue: 1
Year: 2009
A gene signature for post-infectious chronic fatigue syndrome

Author(s): Gow John | Hagan Suzanne | Herzyk Pawel | Cannon Celia | Behan Peter | Chaudhuri Abhijit
Volume: 2
Issue: 1
Year: 2009
Genomic profiling distinguishes familial multiple and sporadic multiple meningiomas

Author(s): Shen Yiping | Nunes Fabio | Stemmer-Rachamimov Anat | James Marianne | Mohapatra Gayatry | Plotkin Scott | Betensky Rebecca | Engler David | Roy Jennifer | Ramesh Vijaya | Gusella James
Volume: 2
Issue: 1
Year: 2009
A longitudinal study of gene expression in healthy individuals

Author(s): Karlovich Chris | Duchateau-Nguyen Guillemette | Johnson Andrea | McLoughlin Patricia | Navarro Mercidita | Fleurbaey Carole | Steiner Lori | Tessier Michel | Nguyen Tracy | Wilhelm-Seiler Monika | Caulfield John
Volume: 2
Issue: 1
Year: 2009
The Gene expression Grade Index: a potential predictor of relapse for endocrine-treated breast cancer patients in the BIG 1–98 trial

Author(s): Desmedt Christine | Giobbie-Hurder Anita | Neven Patrick | Paridaens Robert | Christiaens Marie-Rose | Smeets Ann | Lallemand Françoise | Haibe-Kains Benjamin | Viale Giuseppe | Gelber Richard | Piccart Martine | Sotiriou Christos
Volume: 2
Issue: 1
Year: 2009
Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer

Author(s): Li Meng | Balch Curt | Montgomery John | Jeong Mikyoung | Chung Jae | Yan Pearlly | Huang Tim | Kim Sun | Nephew Kenneth
Volume: 2
Issue: 1
Year: 2009
MLL rearrangements in pediatric acute lymphoblastic and myeloblastic leukemias: MLL specific and lineage specific signatures

Author(s): Zangrando Andrea | Dell'Orto Marta | te Kronnie Geertruy | Basso Giuseppe
Volume: 2
Issue: 1
Year: 2009
NMD inhibition fails to identify tumour suppressor genes in microsatellite stable gastric cancer cell lines

Author(s): Buffart Tineke | Tijssen Marianne | El-Bchiri Jamila | Duval Alex | Wiel Mark | Ylstra Bauke | Meijer Gerrit | Carvalho Beatriz
Volume: 2
Issue: 1
Year: 2009
Induction of the interleukin 6/ signal transducer and activator of transcription pathway in the lungs of mice sub-chronically exposed to mainstream tobacco smoke

Author(s): Halappanavar Sabina | Russell Marsha | Stampfli Martin | Williams Andrew | Yauk Carole
Volume: 2
Issue: 1
Year: 2009
Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood

Author(s): Stamova Boryana | Apperson Michelle | Walker Wynn | Tian Yingfang | Xu Huichun | Adamczy Peter | Zhan Xinhua | Liu Da-Zhi | Ander Bradley | Liao Isaac | Gregg Jeffrey | Turner Renee | Jickling Glen | Lit Lisa | Sharp Frank
Volume: 2
Issue: 1
Year: 2009
Anti-oncogenic and pro-differentiation effects of clorgyline, a monoamine oxidase A inhibitor, on high grade prostate cancer cells

Author(s): Zhao Hongjuan | Flamand Vincent | Peehl Donna
Volume: 2
Issue: 1
Year: 2009
Hepatic inflammation mediated by hepatitis C virus core protein is ameliorated by blocking complement activation

Author(s): Chang Ming-Ling | Yeh Chau-Ting | Lin Deng-Yn | Ho Yu-Pin | Hsu Chen-Ming | Bissell D Montgomery
Volume: 2
Issue: 1
Year: 2009
A gene expression profile for detection of sufficient tumour cells in breast tumour tissue: microarray diagnosis eligibility

Author(s): Roepman Paul | Schuurman Arenda | Delahaye Leonie | Witteveen Anke | Floore Arno | Glas Annuska
Volume: 2
Issue: 1
Year: 2009
Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data

Author(s): Gorlov Ivan | Byun Jinyoung | Gorlova Olga | Aparicio Ana | Efstathiou Eleni | Logothetis Christopher
Volume: 2
Issue: 1
Year: 2009
Prediction of acute multiple sclerosis relapses by transcription levels of peripheral blood cells

Author(s): Gurevich Michael | Tuller Tamir | Rubinstein Udi | Or-Bach Rotem | Achiron Anat
Volume: 2
Issue: 1
Year: 2009
Host sequence motifs shared by HIV predict response to antiretroviral therapy

Author(s): Dampier William | Evans Perry | Ungar Lyle | Tozeren Aydin
Volume: 2
Issue: 1
Year: 2009
Novel transcriptional profile in wrist muscles from cerebral palsy patients

Author(s): Smith Lucas | Pontén Eva | Hedström Yvette | Ward Samuel | Chambers Henry | Subramaniam Shankar | Lieber Richard
Volume: 2
Issue: 1
Year: 2009
Discovering cancer genes by integrating network and functional properties

Author(s): Li Li | Zhang Kangyu | Lee James | Cordes Shaun | Davis David | Tang Zhijun
Volume: 2
Issue: 1
Year: 2009
MicroRNA-125a is over-expressed in insulin target tissues in a spontaneous rat model of Type 2 Diabetes

Author(s): Herrera Blanca | Lockstone Helen | Taylor Jennifer | Wills Quin | Kaisaki Pamela | Barrett Amy | Camps Carme | Fernandez Christina | Ragoussis Jiannis | Gauguier Dominique | McCarthy Mark | Lindgren Cecilia
Volume: 2
Issue: 1
Year: 2009
Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family

Author(s): Sanga Sandeep | Broom Bradley | Cristini Vittorio | Edgerton Mary
Volume: 2
Issue: 1
Year: 2009
Transcriptional profiling differences for articular cartilage and repair tissue in equine joint surface lesions

Author(s): Mienaltowski Michael | Huang Liping | Frisbie David | McIlwraith C Wayne | Stromberg Arnold | Bathke Arne | MacLeod James
Volume: 2
Issue: 1
Year: 2009
Evaluation of a new high-dimensional miRNA profiling platform

Author(s): Cunningham Julie | Oberg Ann | Borralho Pedro | Kren Betsy | French Amy | Wang Liang | Bot Brian | Morlan Bruce | Silverstein Kevin | Staggs Rod | Zeng Yan | Lamblin Anne-Francoise | Hilker Christopher | Fan Jian-Bing | Steer Clifford | Thibodeau Stephen
Volume: 2
Issue: 1
Year: 2009
Verification of genes differentially expressed in neuroblastoma tumours: a study of potential tumour suppressor genes

Author(s): Thorell Kaisa | Bergman Annika | Carén Helena | Nilsson Staffan | Kogner Per | Martinsson Tommy | Abel Frida
Volume: 2
Issue: 1
Year: 2009
Early over expression of messenger RNA for multiple genes, including insulin, in the Pancreatic Lymph Nodes of NOD mice is associated with Islet Autoimmunity

Author(s): Regnault Béatrice | Osorio y Fortea José | Miao Dongmei | Eisenbarth George | Melanitou Evie
Volume: 2
Issue: 1
Year: 2009
Gene expression profiling in sinonasal adenocarcinoma

Author(s): Tripodi Dominique | Quéméner Sylvia | Renaudin Karine | Ferron Christophe | Malard Olivier | Guisle-Marsollier Isabelle | Sébille-Rivain Véronique | Verger Christian | Géraut Christian | Gratas-Rabbia-Ré Catherine
Volume: 2
Issue: 1
Year: 2009
Accurate molecular classification of cancer using simple rules

Author(s): Wang Xiaosheng | Gotoh Osamu
Volume: 2
Issue: 1
Year: 2009
A transcriptomic computational analysis of mastic oil-treated Lewis lung carcinomas reveals molecular mechanisms targeting tumor cell growth and survival

Author(s): Moulos Panagiotis | Papadodima Olga | Chatziioannou Aristotelis | Loutrari Heleni | Roussos Charis | Kolisis Fragiskos
Volume: 2
Issue: 1
Year: 2009
DNA microarray profiling of genes differentially regulated by the histone deacetylase inhibitors vorinostat and LBH589 in colon cancer cell lines

Author(s): LaBonte Melissa | Wilson Peter | Fazzone William | Groshen Susan | Lenz Heinz-Josef | Ladner Robert
Volume: 2
Issue: 1
Year: 2009
A metadata approach for clinical data management in translational genomics studies in breast cancer

Author(s): Papatheodorou Irene | Crichton Charles | Morris Lorna | Maccallum Peter | Davies Jim | Brenton James | Caldas Carlos
Volume: 2
Issue: 1
Year: 2009
Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells

Author(s): Bowen Nathan | Walker L DeEtte | Matyunina Lilya | Logani Sanjay | Totten Kimberly | Benigno Benedict | McDonald John
Volume: 2
Issue: 1
Year: 2009
A taxonomy of epithelial human cancer and their metastases

Author(s): Gevaert Olivier | Daemen Anneleen | De Moor Bart | Libbrecht Louis
Volume: 2
Issue: 1
Year: 2009
Identifying significant genetic regulatory networks in the prostate cancer from microarray data based on transcription factor analysis and conditional independency

Author(s): Yeh Hsiang-Yuan | Cheng Shih-Wu | Lin Yu-Chun | Yeh Cheng-Yu | Lin Shih-Fang | Soo Von-Wun
Volume: 2
Issue: 1
Year: 2009
Insight in modulation of inflammation in response to diclofenac intervention: a human intervention study

Author(s): van Erk Marjan | Wopereis Suzan | Rubingh Carina | van Vliet Trinette | Verheij Elwin | Cnubben Nicole | Pedersen Theresa | Newman John | Smilde Age | Greef Jan | Hendriks Henk | van Ommen Ben
Volume: 3
Issue: 1
Year: 2010
Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information

Author(s): Zhang Yonqing | De Supriyo | Garner John | Smith Kirstin | Wang S Alex | Becker Kevin
Volume: 3
Issue: 1
Year: 2010
Mutation screening of melatonin-related genes in patients with autism spectrum disorders

Author(s): Jonsson Lina | Ljunggren Elin | Bremer Anna | Pedersen Christin | Landén Mikael | Thuresson Kent | Giacobini MaiBritt | Melke Jonas
Volume: 3
Issue: 1
Year: 2010
Molecular sampling of prostate cancer: a dilemma for predicting disease progression

Author(s): Sboner Andrea | Demichelis Francesca | Calza Stefano | Pawitan Yudi | Setlur Sunita | Hoshida Yujin | Perner Sven | Adami Hans-Olov | Fall Katja | Mucci Lorelei | Kantoff Philip | Stampfer Meir | Andersson Swen-Olof | Varenhorst Eberhard | Johansson Jan-Erik | Gerstein Mark | Golub Todd | Rubin Mark | Andrén Ove
Volume: 3
Issue: 1
Year: 2010
Genotypes and haplotypes in the insulin-like growth factors, their receptors and binding proteins in relation to plasma metabolic levels and mammographic density

Author(s): Biong Margarethe | Gram Inger | Brill Ilene | Johansen Fredrik | Solvang Hiroko | Alnaes Grethe | Fagerheim Toril | Bremnes Yngve | Chanock Stephen | Burdett Laurie | Yeager Meredith | Ursin Giske | Kristensen Vessela
Volume: 3
Issue: 1
Year: 2010
Gene expression signatures in childhood acute leukemias are largely unique and distinct from those of normal tissues and other malignancies

Author(s): Andersson Anna | Edén Patrik | Olofsson Tor | Fioretos Thoas
Volume: 3
Issue: 1
Year: 2010
mspecLINE: bridging knowledge of human disease with the proteome

Author(s): Handcock Jeremy | Deutsch Eric | Boyle John
Volume: 3
Issue: 1
Year: 2010
Gene profiling of the erythro- and megakaryoblastic leukaemias induced by the Graffi murine retrovirus

Author(s): Voisin Veronique | Legault Philippe | Ospina Diana | Ben-David Yaacov | Rassart Eric
Volume: 3
Issue: 1
Year: 2010
Association of adipocyte genes with ASP expression: a microarray analysis of subcutaneous and omental adipose tissue in morbidly obese subjects

Author(s): MacLaren Robin | Cui Wei | Lu HuiLing | Simard Serge | Cianflone Katherine
Volume: 3
Issue: 1
Year: 2010
Genome-wide methylation and expression profiling identifies promoter characteristics affecting demethylation-induced gene up-regulation in melanoma

Author(s): Rubinstein Jill | Tran Nam | Ma Shuangge | Halaban Ruth | Krauthammer Michael
Volume: 3
Issue: 1
Year: 2010
Dynamic cross-talk analysis among TNF-R, TLR-4 and IL-1R signalings in TNFα-induced inflammatory responses

Author(s): Yang Shih-Kuang | Wang Yu-Chao | Chao Chun-Cheih | Chuang Yung-Jen | Lan Chung-Yu | Chen Bor-Sen
Volume: 3
Issue: 1
Year: 2010
Molecular analysis of endothelial progenitor cell (EPC) subtypes reveals two distinct cell populations with different identities

Author(s): Medina Reinhold | O'Neill Christina | Sweeney Mark | Guduric-Fuchs Jasenka | Gardiner Tom | Simpson David | Stitt Alan
Volume: 3
Issue: 1
Year: 2010
Genomics and proteomics approaches to the study of cancer-stroma interactions

Author(s): Rodrigues-Lisoni Flávia | Peitl Paulo | Vidotto Alessandra | Polachini Giovana | Maniglia José | Carmona-Raphe Juliana | Cunha Bianca | Henrique Tiago | Souza Caique | Teixeira Rodrigo | Fukuyama Erica | Michaluart Pedro | de Carvalho Marcos | Oliani Sonia | Tajara Eloiza
Volume: 3
Issue: 1
Year: 2010
Signaling pathway networks mined from human pituitary adenoma proteomics data

Author(s): Zhan Xianquan | Desiderio Dominic
Volume: 3
Issue: 1
Year: 2010
Predicting environmental chemical factors associated with disease-related gene expression data

Author(s): Patel Chirag | Butte Atul
Volume: 3
Issue: 1
Year: 2010
MUC1-associated proliferation signature predicts outcomes in lung adenocarcinoma patients

Author(s): MacDermed Dhara | Khodarev Nikolai | Pitroda Sean | Edwards Darrin | Pelizzari Charles | Huang Lei | Kufe Donald | Weichselbaum Ralph
Volume: 3
Issue: 1
Year: 2010
Peripheral blood gene expression patterns discriminate among chronic inflammatory diseases and healthy controls and identify novel targets

Author(s): Mesko Bertalan | Poliska1 Szilard | Szegedi Andrea | Szekanecz Zoltan | Palatka Karoly | Papp Maria | Nagy Laszlo
Volume: 3
Issue: 1
Year: 2010
CNAReporter: a GenePattern pipeline for the generation of clinical reports of genomic alterations

Author(s): Kotliarov Yuri | Bozdag Serdar | Cheng Hangjiong | Wuchty Stefan | Zenklusen Jean-Claude | Fine Howard
Volume: 3
Issue: 1
Year: 2010
Pathway analysis comparison using Crohn's disease genome wide association studies

Author(s): Ballard David | Abraham Clara | Cho Judy | Zhao Hongyu
Volume: 3
Issue: 1
Year: 2010
An algorithm for classifying tumors based on genomic aberrations and selecting representative tumor models

Author(s): Lu Xin | Zhang Ke | Van Sant Charles | Coon John | Semizarov Dimitri
Volume: 3
Issue: 1
Year: 2010
A combined genome-wide linkage and association approach to find susceptibility loci for platelet function phenotypes in European American and African American families with coronary artery disease

Author(s): Mathias Rasika | Kim Yoonhee | Sung Heejong | Yanek Lisa | Mantese VJ | Hererra-Galeano J Enrique | Ruczinski Ingo | Wilson Alexander | Faraday Nauder | Becker Lewis | Becker Diane
Volume: 3
Issue: 1
Year: 2010
Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus

Author(s): Bell Christopher | Teschendorff Andrew | Rakyan Vardhman | Maxwell Alexander | Beck Stephan | Savage David
Volume: 3
Issue: 1
Year: 2010
Genetic integrity of the human Y chromosome exposed to groundwater arsenic

Author(s): Ali Safdar | Ali Sher
Volume: 3
Issue: 1
Year: 2010
Regulation of early signaling and gene expression in the α-particle and bystander response of IMR-90 human fibroblasts

Author(s): Ghandhi Shanaz | Ming Lihua | Ivanov Vladimir | Hei Tom | Amundson Sally
Volume: 3
Issue: 1
Year: 2010
Decreased expression of GRAF1/OPHN-1-L in the X-linked alpha thalassemia mental retardation syndrome

Author(s): Barresi Vincenza | Ragusa Angela | Fichera Marco | Musso Nicolò | Castiglia Lucia | Rappazzo Giancarlo | Travali Salvatore | Mattina Teresa | Romano Corrado | Cocchi Guido | Condorelli Daniele
Volume: 3
Issue: 1
Year: 2010
Examining smoking-induced differential gene expression changes in buccal mucosa

Author(s): Kupfer Doris | White Vicky | Jenkins Marita | Burian Dennis
Volume: 3
Issue: 1
Year: 2010
Identification of protein-coding and non-coding RNA expression profiles in CD34+ and in stromal cells in refractory anemia with ringed sideroblasts

Author(s): Baratti Mariana | Moreira Yuri | Traina Fabiola | Costa Fernando | Verjovski-Almeida Sergio | Olalla-Saad Sara
Volume: 3
Issue: 1
Year: 2010
A gene expression signature of RAS pathway dependence predicts response to PI3K and RAS pathway inhibitors and expands the population of RAS pathway activated tumors

Author(s): Loboda Andrey | Nebozhyn Michael | Klinghoffer Rich | Frazier Jason | Chastain Michael | Arthur William | Roberts Brian | Zhang Theresa | Chenard Melissa | Haines Brian | Andersen Jannik | Nagashima Kumiko | Paweletz Cloud | Lynch Bethany | Feldman Igor | Dai Hongyue | Huang Pearl | Watters James
Volume: 3
Issue: 1
Year: 2010
Transcriptomic epidemiology of smoking: the effect of smoking on gene expression in lymphocytes

Author(s): Charlesworth Jac | Curran Joanne | Johnson Matthew | Göring Harald | Dyer Thomas | Diego Vincent | Kent Jack | Mahaney Michael | Almasy Laura | MacCluer Jean | Moses Eric | Blangero John
Volume: 3
Issue: 1
Year: 2010
Chemokine gene expression in lung CD8 T cells correlates with protective immunity in mice immunized intra-nasally with Adenovirus-85A

Author(s): Lee Lian | Baban Dilair | Ronan Edward | Ragoussis Jiannis | Beverley Peter | Tchilian Elma
Volume: 3
Issue: 1
Year: 2010
Gene regulatory network reveals oxidative stress as the underlying molecular mechanism of type 2 diabetes and hypertension

Author(s): Jesmin | Rashid Mahbubur | Jamil Hasan | Hontecillas Raquel | Bassaganya-Riera Josep
Volume: 3
Issue: 1
Year: 2010
LNCaP Atlas: Gene expression associated with in vivo progression to castration-recurrent prostate cancer

Author(s): Romanuik Tammy | Wang Gang | Morozova Olena | Delaney Allen | Marra Marco | Sadar Marianne
Volume: 3
Issue: 1
Year: 2010
Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer

Author(s): Zajac Magdalena | Gomez Gonzalo | Benitez Javier | Martínez-Delgado Beatriz
Volume: 3
Issue: 1
Year: 2010
Evaluation of the bacterial diversity of Pressure ulcers using bTEFAP pyrosequencing

Author(s): Smith Drake | Snow David | Rees Eric | Zischkau Ann | Hanson J Delton | Wolcott Randall | Sun Yan | White Jennifer | Kumar Shashi | Dowd Scot
Volume: 3
Issue: 1
Year: 2010
Genotator: A disease-agnostic tool for genetic annotation of disease

Author(s): Wall Dennis | Pivovarov Rimma | Tong Mark | Jung Jae-Yoon | Fusaro Vincent | DeLuca Todd | Tonellato Peter
Volume: 3
Issue: 1
Year: 2010
Literature-based discovery of diabetes- and ROS-related targets

Author(s): Hur Junguk | Sullivan Kelli | Schuyler Adam | Hong Yu | Pande Manjusha | States David | Jagadish H | Feldman Eva
Volume: 3
Issue: 1
Year: 2010
Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1

Author(s): Kim Hoon | Watkinson John | Varadan Vinay | Anastassiou Dimitris
Volume: 3
Issue: 1
Year: 2010
Conversion of a molecular classifier obtained by gene expression profiling into a classifier based on real-time PCR: a prognosis predictor for gliomas

Author(s): Kawarazaki Satoru | Taniguchi Kazuya | Shirahata Mitsuaki | Kukita Yoji | Kanemoto Manabu | Mikuni Nobuhiro | Hashimoto Nobuo | Miyamoto Susumu | Takahashi Jun | Kato Kikuya
Volume: 3
Issue: 1
Year: 2010
Hepatic microRNA expression is associated with the response to interferon treatment of chronic hepatitis C

Author(s): Murakami Yoshiki | Tanaka Masami | Toyoda Hidenori | Hayashi Katsuyuki | Kuroda Masahiko | Tajima Atsushi | Shimotohno Kunitada
Volume: 3
Issue: 1
Year: 2010
Admixture mapping of end stage kidney disease genetic susceptibility using estimated mutual information ancestry informative markers

Author(s): Shlush Liran | Bercovici Sivan | Wasser Walter | Yudkovsky Guennady | Templeton Alan | Geiger Dan | Skorecki Karl
Volume: 3
Issue: 1
Year: 2010
A genome-wide association study of serum uric acid in African Americans

Author(s): Charles Bashira | Shriner Daniel | Doumatey Ayo | Chen Guanjie | Zhou Jie | Huang Hanxia | Herbert Alan | Gerry Norman | Christman Michael | Adeyemo Adebowale | Rotimi Charles
Volume: 4
Issue: 1
Year: 2011
Animal model integration to AutDB, a genetic database for autism

Author(s): Kumar Ajay | Wadhawan Rachna | Swanwick Catherine | Kollu Ravi | Basu Saumyendra | Banerjee-Basu Sharmila
Volume: 4
Issue: 1
Year: 2011
The use of ultra-dense array CGH analysis for the discovery of micro-copy number alterations and gene fusions in the cancer genome

Author(s): Przybytkowski Ewa | Ferrario Cristiano | Basik Mark
Volume: 4
Issue: 1
Year: 2011
A novel SNP analysis method to detect copy number alterations with an unbiased reference signal directly from tumor samples

Author(s): Lisovich Alex | Chandran Uma | Lyons-Weiler Maureen | LaFramboise William | Brown Ashley | Jakacki Regina | Pollack Ian | Sobol Robert
Volume: 4
Issue: 1
Year: 2011
Confident Predictability: Identifying reliable gene expression patterns for individualized tumor classification using a local minimax kernel algorithm

Author(s): Jones Lee | Zou Fei | Kheifets Alexander | Rybnikov Konstantin | Berry Damon | Tan Aik
Volume: 4
Issue: 1
Year: 2011
Identification of disease-causing genes using microarray data mining and Gene Ontology

Author(s): Mohammadi Azadeh | Saraee Mohammad | Salehi Mansoor
Volume: 4
Issue: 1
Year: 2011
Incorporating higher-order representative features improves prediction in network-based cancer prognosis analysis

Author(s): Ma Shuangge | Kosorok Michael | Huang Jian | Dai Ying
Volume: 4
Issue: 1
Year: 2011
Systems biology of interstitial lung diseases: integration of mRNA and microRNA expression changes

Author(s): Cho Ji-Hoon | Gelinas Richard | Wang Kai | Etheridge Alton | Piper Melissa | Batte Kara | Dakhallah Duaa | Price Jennifer | Bornman Dan | Zhang Shile | Marsh Clay | Galas David
Volume: 4
Issue: 1
Year: 2011
Gastric cancers of Western European and African patients show different patterns of genomic instability

Author(s): Buffart Tineke | Louw Melanie | van Grieken Nicole | Tijssen Marianne | Carvalho Beatriz | Ylstra Bauke | Grabsch Heike | Mulder Chris | van de Velde Cornelis | van der Merwe Schalk | Meijer Gerrit
Volume: 4
Issue: 1
Year: 2011
Building prognostic models for breast cancer patients using clinical variables and hundreds of gene expression signatures

Author(s): Fan Cheng | Prat Aleix | Parker Joel | Liu Yufeng | Carey Lisa | Troester Melissa | Perou Charles
Volume: 4
Issue: 1
Year: 2011
Gene expression in cardiac tissues from infants with idiopathic conotruncal defects

Author(s): Bittel Douglas | Butler Merlin | Kibiryeva Nataliya | Marshall Jennifer | Chen Jie | Lofland Gary | O'Brien James
Volume: 4
Issue: 1
Year: 2011
Expression profiling of formalin-fixed paraffin-embedded primary breast tumors using cancer-specific and whole genome gene panels on the DASL® platform

Author(s): Reinholz Monica | Eckel-Passow Jeanette | Anderson S Keith | Asmann Yan | Zschunke Michael | Oberg Ann | McCullough Ann | Dueck Amylou | Chen Beiyun | April Craig | Wickham-Garcia Eliza | Jenkins Robert | Cunningham Julie | Jen Jin | Perez Edith | Fan Jian-Bing | Lingle Wilma
Volume: 3
Issue: 1
Year: 2010
Gene expression profiling of subcutaneous adipose tissue in morbid obesity using a focused microarray: Distinct expression of cell-cycle- and differentiation-related genes

Author(s): Rodríguez-Acebes Sara | Palacios Nuria | Botella-Carretero José | Olea Nuria | Crespo Lorena | Peromingo Roberto | Gómez-Coronado Diego | Lasunción Miguel | Vázquez Clotilde | Martínez-Botas Javier
Volume: 3
Issue: 1
Year: 2010
Comparative gene expression profiling analysis of urothelial carcinoma of the renal pelvis and bladder

Author(s): Zhang Zhongfa | Furge Kyle | Yang Ximing | Teh Bin | Hansel Donna
Volume: 3
Issue: 1
Year: 2010
Primate-specific evolution of noncoding element insertion into PLA2G4C and human preterm birth

Author(s): Plunkett Jevon | Doniger Scott | Morgan Thomas | Haataja Ritva | Hallman Mikko | Puttonen Hilkka | Menon Ramkumar | Kuczynski Edward | Norwitz Errol | Snegovskikh Victoria | Palotie Aarno | Peltonen Leena | Fellman Vineta | DeFranco Emily | Chaudhari Bimal | Oates John | Boutaud Olivier | McGregor Tracy | McElroy Jude | Teramo Kari | Borecki Ingrid | Fay Justin | Muglia Louis
Volume: 3
Issue: 1
Year: 2010
Gene expression profiling in whole blood identifies distinct biological pathways associated with obesity

Author(s): Ghosh Sujoy | Dent Robert | Harper Mary-Ellen | Gorman Shelby | Stuart Joan | McPherson Ruth
Volume: 3
Issue: 1
Year: 2010
Birt-Hogg-Dubé renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression

Author(s): Klomp Jeff | Petillo David | Niemi Natalie | Dykema Karl | Chen Jindong | Yang Ximing | Sääf Annika | Zickert Peter | Aly Markus | Bergerheim Ulf | Nordenskjöld Magnus | Gad Sophie | Giraud Sophie | Denoux Yves | Yonneau Laurent | Méjean Arnaud | Vasiliu Viorel | Richard Stéphane | MacKeigan Jeffrey | Teh Bin | Furge Kyle
Volume: 3
Issue: 1
Year: 2010
An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer

Author(s): Jeong Jaesik | Li Lang | Liu Yunlong | Nephew Kenneth | Huang Tim | Shen Changyu
Volume: 3
Issue: 1
Year: 2010
Enrichment of ultraconserved elements among genomic imbalances causing mental delay and congenital anomalies

Author(s): Martínez Francisco | Monfort Sandra | Roselló Mónica | Oltra Silvestre | Blesa David | Quiroga Ramiro | Mayo Sonia | Orellana Carmen
Volume: 3
Issue: 1
Year: 2010
Identification of SERPINA1 as single marker for papillary thyroid carcinoma through microarray meta analysis and quantification of its discriminatory power in independent validation

Author(s): Vierlinger Klemens | Mansfeld Markus | Koperek Oskar | Nöhammer Christa | Kaserer Klaus | Leisch Friedrich
Volume: 4
Issue: 1
Year: 2011
Discriminating lymphomas and reactive lymphadenopathy in lymph node biopsies by gene expression profiling

Author(s): Loi To Ha | Campain Anna | Bryant Adam | Molloy Tim | Lutherborrow Mark | Turner Jennifer | Yang Yee | Ma David
Volume: 4
Issue: 1
Year: 2011
Sex hormones and gene expression signatures in peripheral blood from postmenopausal women - the NOWAC postgenome study

Author(s): Waaseth Marit | Olsen Karina | Rylander Charlotta | Lund Eiliv | Dumeaux Vanessa
Volume: 4
Issue: 1
Year: 2011
Comparison of genome-wide array genomic hybridization platforms for the detection of copy number variants in idiopathic mental retardation

Author(s): Tucker Tracy | Montpetit Alexandre | Chai David | Chan Susanna | Chénier Sébastien | Coe Bradley | Delaney Allen | Eydoux Patrice | Lam Wan | Langlois Sylvie | Lemyre Emmanuelle | Marra Marco | Qian Hong | Rouleau Guy | Vincent David | Michaud Jacques | Friedman Jan
Volume: 4
Issue: 1
Year: 2011
2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting

Author(s): Bouwman Freek | de Roos Baukje | Rubio-Aliaga Isabel | Crosley L Katie | Duthie Susan | Mayer Claus | Horgan Graham | Polley Abigael | Heim Carolin | Coort Susan | Evelo Chris | Mulholland Francis | Johnson Ian | Elliott Ruan | Daniel Hannelore | Mariman Edwin
Volume: 4
Issue: 1
Year: 2011
Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients

Author(s): Elashoff Michael | Wingrove James | Beineke Philip | Daniels Susan | Tingley Whittemore | Rosenberg Steven | Voros Szilard | Kraus William | Ginsburg Geoffrey | Schwartz Robert | Ellis Stephen | Tahirkheli Naheem | Waksman Ron | McPherson John | Lansky Alexandra | Topol Eric
Volume: 4
Issue: 1
Year: 2011
An integrative approach to identifying cancer chemoresistance-associated pathways

Author(s): Chao Shih-Yi | Chiang Jung-Hsien | Huang A-Mei | Chang Woan-Shan
Volume: 4
Issue: 1
Year: 2011
CDCOCA: A statistical method to define complexity dependence of co-occuring chromosomal aberrations

Author(s): Kumar Nitin | Rehrauer Hubert | Cai Haoyang | Baudis Michael
Volume: 4
Issue: 1
Year: 2011
Integrative analysis of next generation sequencing for small non-coding RNAs and transcriptional regulation in Myelodysplastic Syndromes

Author(s): Beck Dominik | Ayers Steve | Wen Jianguo | Brandl Miriam | Pham Tuan | Webb Paul | Chang Chung-Che | Zhou Xiaobo
Volume: 4
Issue: 1
Year: 2011
Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health

Author(s): Crielaard Wim | Zaura Egija | Schuller Annemarie | Huse Susan | Montijn Roy | Keijser Bart
Volume: 4
Issue: 1
Year: 2011
Time course analysis of gene expression identifies multiple genes with differential expression in patients with in-stent restenosis

Author(s): Ganesh Santhi | Joo Jungnam | Skelding Kimberly | Mehta Laxmi | Zheng Gang | O'Neill Kathleen | Billings Eric | Helgadottir Anna | Andersen Karl | Thorgeirsson Gudmundur | Gudnason Thorarinn | Geller Nancy | Simari Robert | Holmes David | O'Neill William | Nabel Elizabeth
Volume: 4
Issue: 1
Year: 2011
Bioinformatic analyses identifies novel protein-coding pharmacogenomic markers associated with paclitaxel sensitivity in NCI60 cancer cell lines

Author(s): Eng Lawson | Ibrahim-zada Irada | Jarjanazi Hamdi | Savas Sevtap | Meschian Mehran | Pritchard Kathleen | Ozcelik Hilmi
Volume: 4
Issue: 1
Year: 2011
Comparing the old and new generation SELDI-TOF MS: implications for serum protein profiling

Author(s): Gast Marie-Christine | Engwegen Judith | Schellens Jan | Beijnen Jos
Volume: 1
Issue: 1
Year: 2008
Identification of molecular pathways affected by pterostilbene, a natural dimethylether analog of resveratrol

Author(s): Pan Zhiqiang | Agarwal Ameeta | Xu Tao | Feng Qin | Baerson Scott | Duke Stephen | Rimando Agnes
Volume: 1
Issue: 1
Year: 2008
Predictive gene lists for breast cancer prognosis: A topographic visualisation study

Author(s): Sivaraksa Mingmanas | Lowe David
Volume: 1
Issue: 1
Year: 2008
Expression profiling with RNA from formalin-fixed, paraffin-embedded material

Author(s): Oberli Andrea | Popovici Vlad | Delorenzi Mauro | Baltzer Anna | Antonov Janine | Matthey Sybille | Aebi Stefan | Altermatt Hans | Jaggi Rolf
Volume: 1
Issue: 1
Year: 2008
Cell cycle correlated genes dictate the prognostic power of breast cancer gene lists

Author(s): Mosley Jonathan | Keri Ruth
Volume: 1
Issue: 1
Year: 2008
Identification of differentially expressed genes in fibroblasts derived from patients with Dupuytren's Contracture

Author(s): Satish Latha | LaFramboise William | O'Gorman David | Johnson Sandra | Janto Benjamin | Gan Bing | Baratz Mark | Hu Fen | Post J Christopher | Ehrlich Garth | Kathju Sandeep
Volume: 1
Issue: 1
Year: 2008
Generation of a non-small cell lung cancer transcriptome microarray

Author(s): Tanney Austin | Oliver Gavin | Farztdinov Vadim | Kennedy Richard | Mulligan Jude | Fulton Ciaran | Farragher Susan | Field John | Johnston Patrick | Harkin D Paul | Proutski Vitali | Mulligan Karl
Volume: 1
Issue: 1
Year: 2008
Association of ABCB1 genetic variants with renal function in Africans and in Caucasians

Author(s): Bochud Murielle | Eap Chin | Maillard Marc | Johnson Toby | Vollenweider Peter | Bovet Pascal | Elston Robert | Bergmann Sven | Beckmann Jacques | Waterworth Dawn | Mooser Vincent | Gabriel Anne | Burnier Michel
Volume: 1
Issue: 1
Year: 2008
Pro-neural transcription factors as cancer markers

Author(s): Vias Maria | Massie Charlie | East Philip | Scott Helen | Warren Anne | Zhou Zongxiang | Nikitin Alexander | Neal David | Mills Ian
Volume: 1
Issue: 1
Year: 2008
Investigating the complex genetic architecture of ankle-brachial index, a measure of peripheral arterial disease, in non-Hispanic whites

Author(s): Kardia Sharon | Greene M Todd | Boerwinkle Eric | Turner Stephen | Kullo Iftikhar
Volume: 1
Issue: 1
Year: 2008
The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis

Author(s): Riker Adam | Enkemann Steven | Fodstad Oystein | Liu Suhu | Ren Suping | Morris Christopher | Xi Yaguang | Howell Paul | Metge Brandon | Samant Rajeev | Shevde Lalita | Li Wenbin | Eschrich Steven | Daud Adil | Ju Jingfang | Matta Jaime
Volume: 1
Issue: 1
Year: 2008
Classification of human cancers based on DNA copy number amplification modeling

Author(s): Myllykangas Samuel | Tikka Jarkko | Böhling Tom | Knuutila Sakari | Hollmén Jaakko
Volume: 1
Issue: 1
Year: 2008
HIP2: An online database of human plasma proteins from healthy individuals

Author(s): Saha Sudipto | Harrison Scott | Shen Changyu | Tang Haixu | Radivojac Predrag | Arnold Randy | Zhang Xiang | Chen Jake
Volume: 1
Issue: 1
Year: 2008
The role of the small intestine in the development of dietary fat-induced obesity and insulin resistance in C57BL/6J mice

Author(s): de Wit Nicole | Bosch-Vermeulen Hanneke | de Groot Philip | Hooiveld Guido | Bromhaar Mechteld | Jansen Jenny | Müller Michael | van der Meer Roelof
Volume: 1
Issue: 1
Year: 2008
Worldwide population differentiation at disease-associated SNPs

Author(s): Myles Sean | Davison Dan | Barrett Jeffrey | Stoneking Mark | Timpson Nic
Volume: 1
Issue: 1
Year: 2008
Characterization of global transcription profile of normal and HPV-immortalized keratinocytes and their response to TNF treatment

Author(s): Termini Lara | Boccardo Enrique | Esteves Gustavo | Hirata Roberto | Martins Waleska | Colo Anna | Neves E Jordão | Villa Luisa | Reis Luiz
Volume: 1
Issue: 1
Year: 2008
Molecular analysis of the vaginal response to estrogens in the ovariectomized rat and postmenopausal woman

Author(s): Jelinsky Scott | Choe Sung | Crabtree Judy | Cotreau Monette | Wilson Ewa | Saraf Kathryn | Dorner Andrew | Brown Eugene | Peano Bryan | Zhang Xiaochun | Winneker Richard | Harris Heather
Volume: 1
Issue: 1
Year: 2008
Whole genome identification of Mycobacterium tuberculosis vaccine candidates by comprehensive data mining and bioinformatic analyses

Author(s): Zvi Anat | Ariel Naomi | Fulkerson John | Sadoff Jerald | Shafferman Avigdor
Volume: 1
Issue: 1
Year: 2008
A genome-wide search replicates evidence of a quantitative trait locus for circulating angiotensin I-converting enzyme (ACE) unlinked to the ACE gene

Author(s): McKenzie Colin | Zhu Xiaofeng | Forrester Terrence | Luke Amy | Adeyemo Adebowale | Bouzekri Nourdine | Cooper Richard
Volume: 1
Issue: 1
Year: 2008
Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells

Author(s): Herbsleb Malene | Birkenkamp-Demtroder Karin | Thykjaer Thomas | Wiuf Carsten | Hein Anne-Mette | Ørntoft Torben | Dyrskjøt Lars
Volume: 1
Issue: 1
Year: 2008
Gene expression in periodontal tissues following treatment

Author(s): Beikler Thomas | Peters Ulrike | Prior Karola | Eisenacher Martin | Flemmig Thomas
Volume: 1
Issue: 1
Year: 2008
Genome wide SNP comparative analysis between EGFR and KRAS mutated NSCLC and characterization of two models of oncogenic cooperation in non-small cell lung carcinoma

Author(s): Blons Hélène | Pallier Karine | Le Corre Delphine | Danel Claire | Tremblay-Gravel Maxime | Houdayer Claude | Fabre-Guillevin Elizabeth | Riquet Marc | Dessen Philippe | Laurent-Puig Pierre
Volume: 1
Issue: 1
Year: 2008
Influence of monolayer, spheroid, and tumor growth conditions on chromosome 3 gene expression in tumorigenic epithelial ovarian cancer cell lines

Author(s): Cody Neal | Zietarska Magdalena | Filali-Mouhim Ali | Provencher Diane | Mes-Masson Anne-Marie | Tonin Patricia
Volume: 1
Issue: 1
Year: 2008
An approach to analyse the specific impact of rapamycin on mRNA-ribosome association

Author(s): Genolet Raphael | Araud Tanguy | Maillard Laetitia | Jaquier-Gubler Pascale | Curran Joseph
Volume: 1
Issue: 1
Year: 2008
Differential expression of genes mapping to recurrently abnormal chromosomal regions characterize neuroblastic tumours with distinct ploidy status

Author(s): Lavarino Cinzia | Garcia Idoia | Mackintosh Carlos | Cheung Nai-Kong | Domenech Gema | Ríos José | Perez Noelia | Rodríguez Eva | de Torres Carmen | Gerald William | Tuset Esperanza | Acosta Sandra | Beleta Helena | de Álava Enrique | Mora Jaume
Volume: 1
Issue: 1
Year: 2008
An integrative genomic approach reveals coordinated expression of intronic miR-335, miR-342, and miR-561 with deregulated host genes in multiple myeloma

Author(s): Ronchetti Domenica | Lionetti Marta | Mosca Laura | Agnelli Luca | Andronache Adrian | Fabris Sonia | Deliliers Giorgio | Neri Antonino
Volume: 1
Issue: 1
Year: 2008
Role of Caveolin 1, E-Cadherin, Enolase 2 and PKCalpha on resistance to methotrexate in human HT29 colon cancer cells

Author(s): Selga Elisabet | Morales Cristina | Noé Véronique | Peinado Miguel | Ciudad Carlos
Volume: 1
Issue: 1
Year: 2008
Identification of candidate genes linking systemic inflammation to atherosclerosis; results of a human in vivo LPS infusion study

Author(s): Sivapalaratnam Suthesh | Farrugia Rosienne | Nieuwdorp Max | Langford Cordelia | van Beem Rachel | Maiwald Stephanie | Zwaginga Jaap | Gusnanto Arief | Watkins Nicholas | Trip Mieke | Ouwehand Willem
Volume: 4
Issue: 1
Year: 2011
Integrating Factor Analysis and a Transgenic Mouse Model to Reveal a Peripheral Blood Predictor of Breast Tumors

Author(s): LaBreche Heather | Nevins Joseph | Huang Erich
Volume: 4
Issue: 1
Year: 2011
Targeted high throughput sequencing in clinical cancer Settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity

Author(s): Kerick Martin | Isau Melanie | Timmermann Bernd | Sültmann Holger | Herwig Ralf | Krobitsch Sylvia | Schaefer Georg | Verdorfer Irmgard | Bartsch Georg | Klocker Helmut | Lehrach Hans | Schweiger Michal
Volume: 4
Issue: 1
Year: 2011
MicroRNA-34a modulates genes involved in cellular motility and oxidative phosphorylation in neural precursors derived from human umbilical cord mesenchymal stem cells

Author(s): Chang Shing-Jyh | Weng Shun-Long | Hsieh Jui-Yu | Wang Tao-Yeuan | Chang Margaret | Wang Hsei-Wei
Volume: 4
Issue: 1
Year: 2011
mRNA expression profiles of primary high-grade central osteosarcoma are preserved in cell lines and xenografts

Author(s): Kuijjer Marieke | Namløs Heidi | Hauben Esther | Machado Isidro | Kresse Stine | Serra Massimo | Llombart-Bosch Antonio | Hogendoorn Pancras | Meza-Zepeda Leonardo | Myklebost Ola | Cleton-Jansen Anne-Marie
Volume: 4
Issue: 1
Year: 2011
Comparative analysis of the human hepatic and adipose tissue transcriptomes during LPS-induced inflammation leads to the identification of differential biological pathways and candidate biomarkers

Author(s): Szalowska Ewa | Dijkstra Martijn | Elferink Marieke | Weening Desiree | de Vries Marcel | Bruinenberg Marcel | Hoek Annemieke | Roelofsen Han | Groothuis Geny | Vonk Roel
Volume: 4
Issue: 1
Year: 2011
Bayesian probit regression model for the diagnosis of pulmonary fibrosis: proof-of-principle

Author(s): Meltzer Eric | Barry William | D'Amico Thomas | Davis Robert | Lin Shu | Onaitis Mark | Morrison Lake | Sporn Thomas | Steele Mark | Noble Paul
Volume: 4
Issue: 1
Year: 2011
Gene expression during normal and FSHD myogenesis

Author(s): Tsumagari Koji | Chang Shao-Chi | Lacey Michelle | Baribault Carl | Chittur Sridar | Sowden Janet | Tawil Rabi | Crawford Gregory | Ehrlich Melanie
Volume: 4
Issue: 1
Year: 2011
Bridging consent: from toll bridges to lift bridges?

Author(s): Budin-Ljøsne Isabelle | Tassé Anne | Knoppers Bartha | Harris Jennifer
Volume: 4
Issue: 1
Year: 2011
Quantifying stability in gene list ranking across microarray derived clinical biomarkers

Author(s): Schneckener Sebastian | Arden Nilou | Schuppert Andreas
Volume: 4
Issue: 1
Year: 2011
Gene network analyses point to the importance of human tissue kallikreins in melanoma progression

Author(s): Martins Waleska | Esteves Gustavo | Almeida Otávio | Rezze Gisele | Landman Gilles | Marques Sarah | Carvalho Alex | L Reis Luiz | Duprat João | Stolf Beatriz
Volume: 4
Issue: 1
Year: 2011
Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features

Author(s): Haakensen Vilde | Lingjærde Ole | Lüders Torben | Riis Margit | Prat Aleix | Troester Melissa | Holmen Marit | Frantzen Jan | Romundstad Linda | Navjord Dina | Bukholm Ida | Johannesen Tom | Perou Charles | Ursin Giske | Kristensen Vessela | Børresen-Dale Anne-Lise | Helland Åslaug
Volume: 4
Issue: 1
Year: 2011
Microarray analysis of peripheral blood lymphocytes from ALS patients and the SAFE detection of the KEGG ALS pathway

Author(s): Mougeot Jean-Luc | Li Zhen | Price Andrea | Wright Fred | Brooks Benjamin
Volume: 4
Issue: 1
Year: 2011
Information encoded in a network of inflammation proteins predicts clinical outcome after myocardial infarction

Author(s): Azuaje Francisco | Rodius Sophie | Zhang Lu | Devaux Yvan | Wagner Daniel
Volume: 4
Issue: 1
Year: 2011
Digital karyotyping reveals probable target genes at 7q21.3 locus in hepatocellular carcinoma

Author(s): Dong Hui | Zhang Hongyi | Liang Jianping | Yan Huadong | Chen Yangyi | Shen Yan | Kong Yalin | Wang Shengyue | Zhao Guoping | Jin Weirong
Volume: 4
Issue: 1
Year: 2011
Meta-analysis of multiple microarray datasets reveals a common gene signature of metastasis in solid tumors

Author(s): Daves Marla | Hilsenbeck Susan | Lau Ching | Man Tsz-Kwong
Volume: 4
Issue: 1
Year: 2011
Integrative network analysis identifies key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma

Author(s): Zheng Siyuan | Tansey William | Hiebert Scott | Zhao Zhongming
Volume: 4
Issue: 1
Year: 2011
Identification of transcriptional regulatory networks specific to pilocytic astrocytoma

Author(s): Deshmukh Hrishikesh | Yu Jinsheng | Shaik Jahangheer | MacDonald Tobey | Perry Arie | Payton Jacqueline | Gutmann David | Watson Mark | Nagarajan Rakesh
Volume: 4
Issue: 1
Year: 2011
Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk

Author(s): Yang Tun-Hsiang | Kon Mark | Hung Jui-Hung | DeLisi Charles
Volume: 4
Issue: 1
Year: 2011
Virtual CGH: an integrative approach to predict genetic abnormalities from gene expression microarray data applied in lymphoma

Author(s): Geng Huimin | Iqbal Javeed | Chan Wing | Ali Hesham
Volume: 4
Issue: 1
Year: 2011
Optimally splitting cases for training and testing high dimensional classifiers

Author(s): Dobbin Kevin | Simon Richard
Volume: 4
Issue: 1
Year: 2011
Immunological network signatures of cancer progression and survival

Author(s): Clancy Trevor | Pedicini Marco | Castiglione Filippo | Santoni Daniele | Nygaard Vegard | Lavelle Timothy | Benson Mikael | Hovig Eivind
Volume: 4
Issue: 1
Year: 2011
Functional microarray analysis suggests repressed cell-cell signaling and cell survival-related modules inhibit progression of head and neck squamous cell carcinoma

Author(s): Coló Anna | Simoes Ana | Carvalho André | Melo Camila | Fahham Lucas | Kowalski Luiz | Soares Fernando | Neves Eduardo | Reis Luiz | Carvalho Alex
Volume: 4
Issue: 1
Year: 2011
Exon array analysis reveals neuroblastoma tumors have distinct alternative splicing patterns according to stage and MYCN amplification status

Author(s): Guo Xiang | Chen Qing-Rong | Song Young | Wei Jun | Khan Javed
Volume: 4
Issue: 1
Year: 2011
Discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors

Author(s): Miller Christopher | Settle Stephen | Sulman Erik | Aldape Kenneth | Milosavljevic Aleksandar
Volume: 4
Issue: 1
Year: 2011
Dual exon skipping in myostatin and dystrophin for Duchenne muscular dystrophy

Author(s): Kemaladewi Dwi | Hoogaars Willem | van Heiningen Sandra | Terlouw Samuel | de Gorter David | den Dunnen Johan | van Ommen Gert Jan | Aartsma-Rus Annemieke | ten Dijke Peter | 't Hoen Peter
Volume: 4
Issue: 1
Year: 2011
A large scale survey reveals that chromosomal copy-number alterations significantly affect gene modules involved in cancer initiation and progression

Author(s): Alloza Eva | Al-Shahrour Fátima | Cigudosa Juan | Dopazo Joaquín
Volume: 4
Issue: 1
Year: 2011
Detecting differential allelic expression using high-resolution melting curve analysis: application to the breast cancer susceptibility gene CHEK2

Author(s): Nguyen-Dumont Tú | Jordheim Lars | Michelon Jocelyne | Forey Nathalie | McKay-Chopin Sandrine | Sinilnikova Olga | Le Calvez-Kelm Florence | Southey Melissa | Tavtigian Sean | Lesueur Fabienne
Volume: 4
Issue: 1
Year: 2011
Chronic insulin treatment of diabetes does not fully normalize alterations in the retinal transcriptome

Author(s): Bixler Georgina | VanGuilder Heather | Brucklacher Robert | Kimball Scot | Bronson Sarah | Freeman Willard
Volume: 4
Issue: 1
Year: 2011
Lineage relationship of prostate cancer cell types based on gene expression

Author(s): Pascal Laura | Vêncio Ricardo | Vessella Robert | Ware Carol | Vêncio Eneida | Denyer Gareth | Liu Alvin
Volume: 4
Issue: 1
Year: 2011
Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines

Author(s): Lam Siew | Lee Serene | Lin Chin | Thomsen Jane | Fu Pan | Murthy Karuturi | Li Haixia | Govindarajan Kunde | Nick Lin | Bourque Guillaume | Gong Zhiyuan | Lufkin Thomas | Liu Edison | Mathavan Sinnakaruppan
Volume: 4
Issue: 1
Year: 2011
The Roche Cancer Genome Database 2.0

Author(s): Küntzer Jan | Maisel Daniela | Lenhof Hans-Peter | Klostermann Stefan | Burtscher Helmut
Volume: 4
Issue: 1
Year: 2011
Interaction of a traditional Chinese Medicine (PHY906) and CPT-11 on the inflammatory process in the tumor microenvironment

Author(s): Wang Ena | Bussom Scott | Chen Jinguo | Quinn Courtney | Bedognetti Davide | Lam Wing | Guan Fulan | Jiang Zaoli | Mark Yichao | Zhao Yingdong | Stroncek David | White Jeffrey | Marincola Francesco | Cheng Yung-Chi
Volume: 4
Issue: 1
Year: 2011
CNVassoc: Association analysis of CNV data using R

Author(s): Subirana Isaac | Diaz-Uriarte Ramon | Lucas Gavin | Gonzalez Juan
Volume: 4
Issue: 1
Year: 2011
Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes

Author(s): Saito Rintaro | Kohno Keisuke | Okada Yuki | Osada Yuko | Numata Koji | Kohama Chihiro | Watanabe Kazufumi | Nakaoka Hajime | Yamamoto Naoyuki | Kanai Akio | Yasue Hiroshi | Murata Soichiro | Abe Kuniya | Tomita Masaru | Ohkohchi Nobuhiro | Kiyosawa Hidenori
Volume: 4
Issue: 1
Year: 2011
Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival

Author(s): Serão Nicola | Delfino Kristin | Southey Bruce | Beever Jonathan | Rodriguez-Zas Sandra
Volume: 4
Issue: 1
Year: 2011
Distinct DNA methylation epigenotypes in bladder cancer from different Chinese sub-populations and its implication in cancer detection using voided urine

Author(s): Chen Pi-Che | Tsai Ming-Hsuan | Yip Sidney | Jou Yeong-Chin | Ng Chi-Fai | Chen Yanning | Wang Xiaoling | Huang Wei | Tung Chun-Liang | Chen Gary | Huang Martin | Tong Joanna | Song Eing-Ju | Chang De-Ching | Hsu Cheng-Da | To Ka-Fai | Shen Cheng-Huang | Chan Michael
Volume: 4
Issue: 1
Year: 2011
A genome-wide DNA methylation study in colorectal carcinoma

Author(s): Kibriya Muhammad | Raza Maruf | Jasmine Farzana | Roy Shantanu | Paul-Brutus Rachelle | Rahaman Ronald | Dodsworth Charlotte | Rakibuz-Zaman Muhammad | Kamal Mohammed | Ahsan Habibul
Volume: 4
Issue: 1
Year: 2011
Distinctions in gastric cancer gene expression signatures derived from laser capture microdissection versus histologic macrodissection

Author(s): Kim Hark | Kim Joseph | Korolevich Susie | Choi Il | Kim Chang | Munroe David | Green Jeffrey
Volume: 4
Issue: 1
Year: 2011
A methodology for utilization of predictive genomic signatures in FFPE samples

Author(s): Freedman Jennifer | Augustine Christina | Selim Angelica | Holshausen Kirsten | Wei Zhengzheng | Tsamis Katherine | Hsu David | Dressman Holly | Barry William | Tyler Douglas | Nevins Joseph
Volume: 4
Issue: 1
Year: 2011
Genome wide association study identifies KCNMA1 contributing to human obesity

Author(s): Jiao Hong | Arner Peter | Hoffstedt Johan | Brodin David | Dubern Beatrice | Czernichow Sébastien | van't Hooft Ferdinand | Axelsson Tomas | Pedersen Oluf | Hansen Torben | Sørensen Thorkild | Hebebrand Johannes | Kere Juha | Dahlman-Wright Karin | Hamsten Anders | Clement Karine | Dahlman Ingrid
Volume: 4
Issue: 1
Year: 2011
The functional cancer map: A systems-level synopsis of genetic deregulation in cancer

Author(s): Krupp Markus | Maass Thorsten | Marquardt Jens | Staib Frank | Bauer Tobias | König Rainer | Biesterfeld Stefan | Galle Peter | Tresch Achim | Teufel Andreas
Volume: 4
Issue: 1
Year: 2011
Multiplicity: an organizing principle for cancers and somatic mutations

Author(s): Frey Lewis | Piccolo Stephen | Edgerton Mary
Volume: 4
Issue: 1
Year: 2011
Systematic Bias in Genomic Classification Due to Contaminating Non-neoplastic Tissue in Breast Tumor Samples

Author(s): Elloumi Fathi | Hu Zhiyuan | Li Yan | Parker Joel | Gulley Margaret | Amos Keith | Troester Melissa
Volume: 4
Issue: 1
Year: 2011
Mitochondrial proteomics of nasopharyngeal carcinoma metastasis

Author(s): Liu Jianping | Zhan Xianquan | Li Maoyu | Li Guoqing | Zhang Pengfei | Xiao Zhefeng | Shao Meiying | Peng Fang | Hu Rong | Chen Zhuchu
Volume: 5
Issue: 1
Year: 2012
Clinical and multiple gene expression variables in survival analysis of breast cancer: Analysis with the hypertabastic survival model

Author(s): Tabatabai Mohammad A | Eby Wayne M | Nimeh Nadim | Li Hong | Singh Karan P
Volume: 5
Issue: 1
Year: 2012
Association of genetic polymorphisms with chronic obstructive pulmonary disease in the Chinese Han population: a case–control study

Author(s): Guo Yi | Gong Yi | Pan Chunming | Qian Yanrong | Shi Guochao | Cheng Qijian | Li Qingyun | Ren Lei | Weng Qiuling | Chen Yi | Cheng Ting | Fan Liang | Jiang Zhihong | Wan Huanying
Volume: 5
Issue: 1
Year: 2012
Mutation screen in the GWAS derived obesity gene SH2B1 including functional analyses of detected variants

Author(s): Volckmar Anna-Lena | Bolze Florian | Jarick Ivonne | Knoll Nadja | Scherag André | Reinehr Thomas | Illig Thomas | Grallert Harald | Wichmann Heinz-Erich | Wiegand Susanna | Biebermann Heike | Krude Heiko | Fischer-Posovszky Pamela | Rief Winfried | Wabitsch Martin | Klingenspor Martin | Hebebrand Johannes | Hinney Anke
Volume: 5
Issue: 1
Year: 2012
Subtypes of primary colorectal tumors correlate with response to targeted treatment in colorectal cell lines

Author(s): Schlicker Andreas | Beran Garry | Chresta Christine M | McWalter Gael | Pritchard Alison | Weston Susie | Runswick Sarah | Davenport Sara | Heathcote Kerry | Castro Denis Alferez | Orphanides George | French Tim | Wessels Lodewyk FA
Volume: 5
Issue: 1
Year: 2012
Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples

Author(s): de la Blétière Diane Raingeard | Blanchet Odile | Cornillet-Lefèbvre Pascale | Coutolleau Anne | Baranger Laurence | Geneviève Franck | Luquet Isabelle | Hunault-Berger Mathilde | Beucher Annaelle | Schmidt-Tanguy Aline | Zandecki Marc | Delneste Yves | Ifrah Norbert | Guardiola Philippe
Volume: 5
Issue: 1
Year: 2012
Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes

Author(s): Lotta Luca A | Wang Mark | Yu Jin | Martinelli Ida | Yu Fuli | Passamonti Serena M | Consonni Dario | Pappalardo Emanuela | Menegatti Marzia | Scherer Steven E | Lewis Lora L | Akbar Humeira | Wu Yuanqing | Bainbridge Matthew N | Muzny Donna M | Mannucci Pier M | Gibbs Richard A | Peyvandi Flora
Volume: 5
Issue: 1
Year: 2012
High-throughput detection of aberrant imprint methylation in the ovarian cancer by the bisulphite PCR-Luminex method

Author(s): Hiura Hitoshi | Okae Hiroaki | Kobayash Hisato | Miyauchi Naoko | Sato Fumi | Sato Akiko | Suzuki Fumihiko | Nagase Satoru | Sugawara Junichi | Nakai Kunihiko | Yaegashi Nobuo | Arima Takahiro
Volume: 5
Issue: 1
Year: 2012
Adipose tissue gene expression analysis reveals changes in inflammatory, mitochondrial respiratory and lipid metabolic pathways in obese insulin-resistant subjects

Author(s): Soronen Jarkko | Laurila Pirkka-Pekka | Naukkarinen Jussi | Surakka Ida | Ripatti Samuli | Jauhiainen Matti | Olkkonen Vesa M | Yki-Järvinen Hannele
Volume: 5
Issue: 1
Year: 2012
Multilocus loss of DNA methylation in individuals with mutations in the histone H3 Lysine 4 Demethylase KDM5C

Author(s): Grafodatskaya Daria | Chung Barian HY | Butcher Darci T | Turinsky Andrei L | Goodman Sarah J | Choufani Sana | Chen Yi-An | Lou Youliang | Zhao Chunhua | Rajendram Rageen | Abidi Fatima E | Skinner Cindy | Stavropoulos James | Bondy Carolyn A | Hamilton Jill | Wodak Shoshana | Scherer Stephen W | Schwartz Charles E | Weksberg Rosanna
Volume: 6
Issue: 1
Year: 2013
Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data

Author(s): Hettne Kristina M | Boorsma André | van Dartel Dorien A M | Goeman Jelle J | de Jong Esther | Piersma Aldert H | Stierum Rob H | Kleinjans Jos C | Kors Jan A
Volume: 6
Issue: 1
Year: 2013
MicroRNA profiling of a CD133+ spheroid-forming subpopulation of the OVCAR3 human ovarian cancer cell line

Author(s): Nam Eun | Lee Maria | Yim Ga | Kim Jae | Kim Sunghoon | Kim Sang | Kim Young
Volume: 5
Issue: 1
Year: 2012
Saliva samples are a viable alternative to blood samples as a source of DNA for high throughput genotyping

Author(s): Abraham Jean E | Maranian Mel J | Spiteri Inmaculada | Russell Roslin | Ingle Susan | Luccarini Craig | Earl Helena M | Pharoah Paul PD | Dunning Alison M | Caldas Carlos
Volume: 5
Issue: 1
Year: 2012
Visualization and identification of health space, based on personalized molecular phenotype and treatment response to relevant underlying biological processes

Author(s): Bouwman Jildau | Vogels Jack TWE | Wopereis Suzan | Rubingh Carina M | Bijlsma Sabina | van Ommen Ben
Volume: 5
Issue: 1
Year: 2012
LINE-1 methylation status and its association with tetralogy of fallot in infants

Author(s): Sheng Wei | Wang Huijun | Ma Xiaojing | Qian Yanyan | Zhang Ping | Wu Yao | Zheng Fengyun | Chen Long | Huang Guoying | Ma Duan
Volume: 5
Issue: 1
Year: 2012
Genes associated with MUC5AC expression in small airway epithelium of human smokers and non-smokers

Author(s): Wang Guoqing | Xu Zhibo | Wang Rui | Al-Hijji Mohammed | Salit Jacqueline | Strulovici-Barel Yael | Tilley Ann E | Mezey Jason G | Crystal Ronald G
Volume: 5
Issue: 1
Year: 2012
Relation between smoking history and gene expression profiles in lung adenocarcinomas

Author(s): Staaf Johan | Jönsson Göran | Jönsson Mats | Karlsson Anna | Isaksson Sofi | Salomonsson Annette | Pettersson Helen M | Soller Maria | Ewers Sven-Börje | Johansson Leif | Jönsson Per | Planck Maria
Volume: 5
Issue: 1
Year: 2012
Batch correction of microarray data substantially improves the identification of genes differentially expressed in Rheumatoid Arthritis and Osteoarthritis

Author(s): Kupfer Peter | Guthke Reinhard | Pohlers Dirk | Huber Rene | Koczan Dirk | Kinne Raimund W
Volume: 5
Issue: 1
Year: 2012
Hybridization and amplification rate correction for affymetrix SNP arrays

Author(s): Wang Quan | Peng Peichao | Qian Minping | Wan Lin | Deng Minghua
Volume: 5
Issue: 1
Year: 2012
MicroRNA expression signature in human abdominal aortic aneurysms

Author(s): Pahl Matthew C | Derr Kimberly | Gäbel Gabor | Hinterseher Irene | Elmore James R | Schworer Charles M | Peeler Thomas C | Franklin David P | Gray John L | Carey David J | Tromp Gerard | Kuivaniemi Helena
Volume: 5
Issue: 1
Year: 2012
Screening significantly hypermethylated genes in fetal tissues compared with maternal blood using a methylated-CpG island recovery assay-based microarray

Author(s): Yin Aihua | Zhang Xiangzhong | Wu Jing | Du Li | He Tianwen | Zhang Xiaozhuang
Volume: 5
Issue: 1
Year: 2012
Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics

Author(s): Diez Diego | Goto Susumu | Fahy John V | Erle David J | Woodruff Prescott G | Wheelock Åsa M | Wheelock Craig E
Volume: 5
Issue: 1
Year: 2012
A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease

Author(s): Raghavachari Nalini | Barb Jennifer | Yang Yanqin | Liu Poching | Woodhouse Kimberly | Levy Daniel | O‘Donnell Christopher J | Munson Peter J | Kato Gregory J
Volume: 5
Issue: 1
Year: 2012
Skeletal muscle alterations and exercise performance decrease in erythropoietin-deficient mice: a comparative study

Author(s): Mille-Hamard Laurence | Billat Veronique L | Henry Elodie | Bonnamy Blandine | Joly Florence | Benech Philippe | Barrey Eric
Volume: 5
Issue: 1
Year: 2012
Molecular prediction for atherogenic risks across different cell types of leukocytes

Author(s): Cheng Feng | Keeley Ellen C | Lee Jae K
Volume: 5
Issue: 1
Year: 2012
Patient-controlled encrypted genomic data: an approach to advance clinical genomics

Author(s): Trakadis Yannis J
Volume: 5
Issue: 1
Year: 2012
Polymorphism in glutamate cysteine ligase catalytic subunit (GCLC) is associated with sulfamethoxazole-induced hypersensitivity in HIV/AIDS patients

Author(s): Wang Danxin | Curtis Amanda | Papp Audrey C | Koletar Susan L | Para Michael F
Volume: 5
Issue: 1
Year: 2012
The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated

Author(s): Shahab Shubin W | Matyunina Lilya V | Hill Christopher G | Wang Lijuan | Mezencev Roman | Walker L | McDonald John F
Volume: 5
Issue: 1
Year: 2012
Genetic and bioinformatic analyses of the expression and function of PI3K regulatory subunit PIK3R3 in an Asian patient gastric cancer library

Author(s): Zhou Jin | Chen Geng | Tang Yew | Sinha Rohit | Wu Yonghui | Yap Chui | Wang Guihua | Hu Junbo | Xia Xianmin | Tan Patrick | Goh Liang | Yen Paul
Volume: 5
Issue: 1
Year: 2012
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