Microbial Informatics and Experimentation

An efficient rRNA removal method for RNA sequencing in GC-rich bacteria

Author(s): Peano Clelia | Pietrelli Alessandro | Consolandi Clarissa | Rossi Elio | Petiti Luca | Tagliabue Letizia | De Bellis Gianluca | Landini Paolo
Volume: 3
Issue: 1
Year: 2013

Bioinformatic identification of Mycobacterium tuberculosis proteins likely to target host cell mitochondria: virulence factors?

Author(s): Moreno-Altamirano María Maximina Bertha | Paredes-González Iris Selene | Espitia Clara | Santiago-Maldonado Mauricio | Hernández-Pando Rogelio | Sánchez-García Francisco Javier
Volume: 2
Issue: 1
Year: 2012

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli

Author(s): Snipen Lars | Wassenaar Trudy M | Altermann Eric | Olson Jonathan | Kathariou Sophia | Lagesen Karin | Takamiya Monica | Knøchel Susanne | Ussery David W | Meinersmann Richard J
Volume: 2
Issue: 1
Year: 2012

Computational genomics-proteomics and Phylogeny analysis of twenty one mycobacterial genomes (Tuberculosis & non Tuberculosis strains)

Author(s): Zakham Fathiah | Aouane Othmane | Ussery David | Benjouad Abdelaziz | Ennaji Moulay
Volume: 2
Issue: 1
Year: 2012

Bacterial phylogenetic tree construction based on genomic translation stop signals

Author(s): Xu Lijing | Kuo Jimmy | Liu Jong-Kang | Wong Tit-Yee
Volume: 2
Issue: 1
Year: 2012

Growth comparison of several Escherichia coli strains exposed to various concentrations of lactoferrin using linear spline regression

Author(s): Sekse Camilla | Bohlin Jon | Skjerve Eystein | Vegarud Gerd E
Volume: 2
Issue: 1
Year: 2012

Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction

Author(s): Ananthasubramanian Seshan | Metri Rahul | Khetan Ankur | Gupta Aman | Handen Adam | Chandra Nagasuma | Ganapathiraju Madhavi
Volume: 2
Issue: 1
Year: 2012

Metagenomics - a guide from sampling to data analysis

Author(s): Thomas Torsten | Gilbert Jack | Meyer Folker
Volume: 2
Issue: 1
Year: 2012

Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments

Author(s): Helal Manal | Kong Fanrong | Chen Sharon CA | Zhou Fei | Dwyer Dominic E | Potter John | Sintchenko Vitali
Volume: 2
Issue: 1
Year: 2012

Use of the University of Minnesota Biocatalysis/Biodegradation Database for study of microbial degradation

Author(s): Ellis Lynda BM | Wackett Lawrence P
Volume: 2
Issue: 1
Year: 2012

Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes

Author(s): Kostadinov Ivaylo | Kottmann Renzo | Ramette Alban | Waldmann Jost | Buttigieg Pier Luigi | Glöckner Frank
Volume: 1
Issue: 1
Year: 2011

The zinc-ribbon domain of Helicobacter pylori HP0958: requirement for RpoN accumulation and possible roles of homologs in other bacteria

Author(s): Pereira Lara E | Tsang Jennifer | Mrázek Jan | Hoover Timothy R
Volume: 1
Issue: 1
Year: 2011

Where the bugs are: analyzing distributions of bacterial phyla by descriptor keyword search in the nucleotide database

Author(s): Squartini Andrea
Volume: 1
Issue: 1
Year: 2011

Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli

Author(s): Price W Nicholson | Handelman Samuel K | Everett John K | Tong Saichiu N | Bracic Ana | Luff Jon D | Naumov Victor | Acton Thomas | Manor Philip | Xiao Rong | Rost Burkhard | Montelione Gaetano T | Hunt John F
Volume: 1
Issue: 1
Year: 2011

The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist

Author(s): Gilbert Jack A | O'Dor Ronald | King Nicholas | Vogel Timothy M
Volume: 1
Issue: 1
Year: 2011

Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset

Author(s): Larsen Peter E | Collart Frank R | Field Dawn | Meyer Folker | Keegan Kevin P | Henry Christopher S | McGrath John | Quinn John | Gilbert Jack A
Volume: 1
Issue: 1
Year: 2011

The Regulatory Network of Pseudomonas aeruginosa

Author(s): Galán-Vásquez Edgardo | Luna Beatriz | Martínez-Antonio Agustino
Volume: 1
Issue: 1
Year: 2011

Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments

Author(s): Hillary William | Lin Song-Han | Upton Chris
Volume: 1
Issue: 1
Year: 2011

Welcome to Microbial Informatics and Experimentation

Author(s): Wise Michael J | Wanner Barry L
Volume: 1
Issue: 1
Year: 2011

Stringent response of Escherichia coli: revisiting the bibliome using literature mining

Author(s): Carneiro Sónia | Lourenço Anália | Ferreira Eugénio C | Rocha Isabel
Volume: 1
Issue: 1
Year: 2011

PerPlot & PerScan: tools for analysis of DNA curvature-related periodicity in genomic nucleotide sequences

Author(s): Mrázek Jan | Chaudhari Tejas | Basu Aryabrata
Volume: 1
Issue: 1
Year: 2011

Prediction of a novel RNA binding domain in crocodilepox Zimbabwe Gene 157

Author(s): Little Nicole S | Quon Taylor | Upton Chris
Volume: 1
Issue: 1
Year: 2011

Natural genetic engineering: intelligence & design in evolution?

Author(s): Ussery David W
Volume: 1
Issue: 1
Year: 2011

Translational web robots for pathogen genome analysis

Author(s): Sintchenko Vitali | Coiera Enrico W
Volume: 1
Issue: 1
Year: 2011