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Journal of Clinical Bioinformatics

ISSN: 2043--9113
Publisher: BioMed Central


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Preferential expression of potential markers for cancer stem cells in large cell neuroendocrine carcinoma of the lung. An FFPE proteomic study

Author(s): Nomura Masaharu | Fukuda Tetsuya | Fujii Kiyonaga | Kawamura Takeshi | Tojo Hiromasa | Kihara Makoto | Bando Yasuhiko | Gazdar Adi F | Tsuboi Masahiro | Oshiro Hisashi | Nagao Toshitaka | Ohira Tatsuo | Ikeda Norihiko | Gotoh Noriko | Kato Harubumi | Marko-Varga Gyorgy | Nishimura Toshihide
Volume: 1
Issue: 1
Year: 2011
Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach

Author(s): Nadkarni Prakash M | Kemp Rowena | Parikh Chirag R
Volume: 1
Issue: 1
Year: 2011
Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma

Author(s): Bebek Gurkan | Orloff Mohammed | Eng Charis
Volume: 1
Issue: 1
Year: 2011
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context

Author(s): Mader Malte | Simon Ronald | Steinbiss Sascha | Kurtz Stefan
Volume: 1
Issue: 1
Year: 2011
Clinical bioinformatics: a new emerging science

Author(s): Wang Xiangdong | Liotta Lance
Volume: 1
Issue: 1
Year: 2011
Data mining of mental health issues of non-bone marrow donor siblings

Author(s): Takita Morihito | Tanaka Yuji | Kodama Yuko | Murashige Naoko | Hatanaka Nobuyo | Kishi Yukiko | Matsumura Tomoko | Ohsawa Yukio | Kami Masahiro
Volume: 1
Issue: 1
Year: 2011
Automated generation of massive image knowledge collections using Microsoft Live Labs Pivot to promote neuroimaging and translational research

Author(s): Viangteeravat Teeradache | Anyanwu Matthew N | Ra Nagisetty Venkateswara | Kuscu Emin
Volume: 1
Issue: 1
Year: 2011
Quantitative analysis of histone exchange for transcriptionally active chromatin

Author(s): Byrum Stephanie D | Taverna Sean D | Tackett Alan J
Volume: 1
Issue: 1
Year: 2011
Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by Phosphoproteomic and Bioinformatic tools

Author(s): López Elena | López Isabel | Sequí Julia | Ferreira Antonio
Volume: 1
Issue: 1
Year: 2011
Functional similarity analysis of human virus-encoded miRNAs

Author(s): Yu Guangchuang | He Qing-Yu
Volume: 1
Issue: 1
Year: 2011
BioBanking - The Holy Grail of novel drug and diagnostic developments?

Author(s): Marko-Varga György
Volume: 1
Issue: 1
Year: 2011
Frontiers of Oncology: Biobanking Resources for the 21st Century

Author(s): Barnholtz-Sloan Jill | Chance Mark R
Volume: 1
Issue: 1
Year: 2011
Peripheral blood gene expression profiles in COPD subjects

Author(s): Bhattacharya Soumyaroop | Tyagi Shivraj | Srisuma Sorachai | DeMeo Dawn L | Shapiro Steven D | Bueno Raphael | Silverman Edwin K | Reilly John J | Mariani Thomas J
Volume: 1
Issue: 1
Year: 2011
A filter-based feature selection approach for identifying potential biomarkers for lung cancer

Author(s): Lee In-Hee | Lushington Gerald H | Visvanathan Mahesh
Volume: 1
Issue: 1
Year: 2011
Roles of XB130, a novel adaptor protein, in cancer

Author(s): Shiozaki Atsushi | Liu Mingyao
Volume: 1
Issue: 1
Year: 2011
Cystic fibrosis testing in a referral laboratory: results and lessons from a six-year period

Author(s): Ridge Perry G | Miller Christine | Bayrak-Toydemir Pinar | Best D Hunter | Mao Rong | Swensen Jeffrey J | Lyon Elaine | Voelkerding Karl V
Volume: 3
Issue: 1
Year: 2013
A ceRNA analysis on LMNA gene focusing on the Hutchinson-Gilford progeria syndrome

Author(s): Arancio Walter | Giordano Carla | Pizzolanti Giuseppe
Volume: 3
Issue: 1
Year: 2013
Availability of MudPIT data for classification of biological samples

Author(s): Silvestre Dario | Zoppis Italo | Brambilla Francesca | Bellettato Valeria | Mauri Giancarlo | Mauri Pierluigi
Volume: 3
Issue: 1
Year: 2013
Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome

Author(s): Shameer Khader | Sowdhamini Ramanathan
Volume: 2
Issue: 1
Year: 2012
Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference

Author(s): Azuaje Francisco J | Heymann Michaël | Ternes Anne-Marie | Wienecke-Baldacchino Anke | Struck Daniel | Moes Danièle | Schneider Reinhard
Volume: 2
Issue: 1
Year: 2012
Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease

Author(s): Masud Rizwan | Shameer Khader | Dhar Aparna | Ding Keyue | Kullo Iftikhar J
Volume: 2
Issue: 1
Year: 2012
Monte Carlo simulation of the Spearman-Kaerber TCID50

Author(s): Wulff Niels H | Tzatzaris Maria | Young Philip J
Volume: 2
Issue: 1
Year: 2012
Analysis of the salivary microbiome using culture-independent techniques

Author(s): Lazarevic Vladimir | Whiteson Katrine | Gaïa Nadia | Gizard Yann | Hernandez David | Farinelli Laurent | Østerås Magne | François Patrice | Schrenzel Jacques
Volume: 2
Issue: 1
Year: 2012
A distinct metabolic signature predicts development of fasting plasma glucose

Author(s): Hische Manuela | Larhlimi Abdelhalim | Schwarz Franziska | Fischer-Rosinský Antje | Bobbert Thomas | Assmann Anke | Catchpole Gareth S | Pfeiffer Andreas FH | Willmitzer Lothar | Selbig Joachim | Spranger Joachim
Volume: 2
Issue: 1
Year: 2012
Brain cancer prognosis: independent validation of a clinical bioinformatics approach

Author(s): Fronza Raffaele | Tramonti Michele | Atchley William R | Nardini Christine
Volume: 2
Issue: 1
Year: 2012
PROGmiR: a tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available data

Author(s): Goswami Chirayu Pankaj | Nakshatri Harikrishna
Volume: 2
Issue: 1
Year: 2012
mCOPA: analysis of heterogeneous features in cancer expression data

Author(s): Wang Chenwei | Taciroglu Alperen | Maetschke Stefan R | Nelson Colleen C | Ragan Mark A | Davis Melissa J
Volume: 2
Issue: 1
Year: 2012
Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays

Author(s): Srinivasan Subhashini | Patil Arun H | Verma Mohit | Bingham Jonathan L | Srivatsan Raghunathan
Volume: 2
Issue: 1
Year: 2012
Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection

Author(s): Stubbs Andrew | McClellan Elizabeth A | Horsman Sebastiaan | Hiltemann Saskia D | Palli Ivo | Nouwens Stephan | Koning Anton HJ | Hoogland Frits | Reumers Joke | Heijsman Daphne | Swagemakers Sigrid | Kremer Andreas | Meijerink Jules | Lambrechts Diether | van der Spek Peter J
Volume: 2
Issue: 1
Year: 2012
The H-factor as a novel quality metric for homology modeling

Author(s): di Luccio Eric | Koehl Patrice
Volume: 2
Issue: 1
Year: 2012
Modeling autism: a systems biology approach

Author(s): Randolph-Gips Mary | Srinivasan Pramila
Volume: 2
Issue: 1
Year: 2012
Cancer classification: Mutual information, target network and strategies of therapy

Author(s): Hsu Wen-Chin | Liu Chan-Cheng | Chang Fu | Chen Su-Shing
Volume: 2
Issue: 1
Year: 2012
High-prevalence and broad spectrum of Cell Adhesion and Extracellular Matrix gene pathway mutations in epithelial ovarian cancer

Author(s): Rafii Arash | Halabi Najeeb M | Malek Joel A
Volume: 2
Issue: 1
Year: 2012
Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypes

Author(s): Guan Xiaowei | Chance Mark R | Barnholtz-Sloan Jill S
Volume: 2
Issue: 1
Year: 2012
Effects of autoclaving and high pressure on allergenicity of hazelnut proteins

Author(s): López Elena | Cuadrado Carmen | Burbano Carmen | Jiménez Maria | Rodríguez Julia | Crespo Jesús F
Volume: 2
Issue: 1
Year: 2012
A dynamic model for tumour growth and metastasis formation

Author(s): Haustein Volker | Schumacher Udo
Volume: 2
Issue: 1
Year: 2012
A comparative analysis of protein targets of withdrawn cardiovascular drugs in human and mouse

Author(s): Zhao Yuqi | Wang Jingwen | Wang Yanjie | Huang Jingfei
Volume: 2
Issue: 1
Year: 2012
The impact of sample storage time on estimates of association in biomarker discovery studies

Author(s): Kugler Karl G | Hackl Werner O | Mueller Laurin AJ | Fiegl Heidi | Graber Armin | Pfeiffer Ruth M
Volume: 1
Issue: 1
Year: 2011
Proteomic characterization of non-small cell lung cancer in a comprehensive translational thoracic oncology database

Author(s): Surati Mosmi | Robinson Matthew | Nandi Suvobroto | Faoro Leonardo | Demchuk Carley | Rolle Cleo E | Kanteti Rajani | Ferguson Benjamin D | Hasina Rifat | Gangadhar Tara C | Salama April K | Arif Qudsia | Kirchner Colin | Mendonca Eneida | Campbell Nicholas | Limvorasak Suwicha | Villaflor Victoria | Hensing Thomas A | Krausz Thomas | Vokes Everett E | Husain Aliya N | Ferguson Mark K | Karrison Theodore G | Salgia Ravi
Volume: 1
Issue: 1
Year: 2011
Moving towards high density clinical signature studies with a human proteome catalogue developing multiplexing mass spectrometry assay panels

Author(s): Rezeli Melinda | Végvári Ákos | Fehniger Thomas E | Laurell Thomas | Marko-Varga György
Volume: 1
Issue: 1
Year: 2011
RNA interference against polo-like kinase-1 in advanced non-small cell lung cancers

Author(s): Kawata Eri | Ashihara Eishi | Maekawa Taira
Volume: 1
Issue: 1
Year: 2011
Virtual screening, identification and experimental testing of novel inhibitors of PBEF1/Visfatin/NMPRTase for glioma therapy

Author(s): Chandra Nagasuma | Bhagavat Raghu | Sharma Eshita | Sreekanthreddy P | Somasundaram Kumaravel
Volume: 1
Issue: 1
Year: 2011
The NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors

Author(s): Gronostajski Richard M | Guaneri Joseph | Lee Dong | Gallo Steven M
Volume: 1
Issue: 1
Year: 2011
A base-calling algorithm for Tm-shifted melting curve SNP assay

Author(s): Liang Kung-Hao | Fen Jun-Jeng | Chang Hsien-Hsun | Wang Hsei-Wei | Hwang Yuchi
Volume: 1
Issue: 1
Year: 2011
Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans

Author(s): Ebbert Mark TW | Bastien Roy RL | Boucher Kenneth M | Martín Miguel | Carrasco Eva | Caballero Rosalía | Stijleman Inge J | Bernard Philip S | Facelli Julio C
Volume: 1
Issue: 1
Year: 2011
Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach

Author(s): Sifakis Emmanouil G | Lambrou George I | Prentza Andriana | Vlahopoulos Spiros | Koutsouris Dimitris | Tzortzatou-Stathopoulou Fotini | Chatziioannou Aristotelis A
Volume: 1
Issue: 1
Year: 2011
Significance of bioinformatics in research of chronic obstructive pulmonary disease

Author(s): Chen Hong | Wang Xiangdong
Volume: 1
Issue: 1
Year: 2011
Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers

Author(s): Netzer Michael | Weinberger Klaus M | Handler Michael | Seger Michael | Fang Xiaocong | Kugler Karl G | Graber Armin | Baumgartner Christian
Volume: 1
Issue: 1
Year: 2011
Clinical data integration of distributed data sources using Health Level Seven (HL7) v3-RIM mapping

Author(s): Viangteeravat Teeradache | Anyanwu Matthew N | Nagisetty Venkateswara | Kuscu Emin | Sakauye Mark | Wu Duojiao
Volume: 1
Issue: 1
Year: 2011
Proteome analysis of bronchoalveolar lavage in pulmonary langerhans cell histiocytosis

Author(s): Landi Claudia | Bargagli Elena | Magi Barbara | Prasse Antje | Muller-Quernheim Joachim | Bini Luca | Rottoli Paola
Volume: 1
Issue: 1
Year: 2011
Metabonomics-based omics study and atherosclerosis

Author(s): Wu Duo-jiao | Zhu Bi-jun | Wang Xiang-dong
Volume: 1
Issue: 1
Year: 2011
Bioinformatic-driven search for metabolic biomarkers in disease

Author(s): Baumgartner Christian | Osl Melanie | Netzer Michael | Baumgartner Daniela
Volume: 1
Issue: 1
Year: 2011
Diagnostic markers based on a computational model of lipoprotein metabolism

Author(s): van Schalkwijk Daniël B | van Ommen Ben | Freidig Andreas P | van der Greef Jan | de Graaf Albert A
Volume: 1
Issue: 1
Year: 2011
Role of clinical bioinformatics in the development of network-based Biomarkers

Author(s): Wang Xiangdong
Volume: 1
Issue: 1
Year: 2011
Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection

Author(s): Dimitrakopoulou Konstantina | Tsimpouris Charalampos | Papadopoulos George | Pommerenke Claudia | Wilk Esther | Sgarbas Kyriakos N | Schughart Klaus | Bezerianos Anastasios
Volume: 1
Issue: 1
Year: 2011
Technical phosphoproteomic and bioinformatic tools useful in cancer research

Author(s): López Elena | Wesselink Jan-Jaap | López Isabel | Mendieta Jesús | Gómez-Puertas Paulino | Muñoz Sarbelio
Volume: 1
Issue: 1
Year: 2011
Automated ERCC1 immunochemistry on hybrid cytology/tissue microarray of malignant effusions: evaluation of antibodies 8F1 and D-10

Author(s): Soltermann Alex | Kilgus-Hawelski Sandra | Behnke Silvia | Storz Martina | Moch Holger | Bode Beata
Volume: 1
Issue: 1
Year: 2011
Biobank resources for future patient care: developments, principles and concepts

Author(s): Végvári Ákos | Welinder Charlotte | Lindberg Henrik | Fehniger Thomas E | Marko-Varga György
Volume: 1
Issue: 1
Year: 2011
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