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Journal of Integrated OMICS

ISSN: 2182--0287
Publisher: Scientific Society Proteomass


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A method for estimation of immunogenic determinants mutability: case studies of HIV1 gp120 and diphtheria toxin

Author(s): Khrustalev Vladislav Victorovich | Barkovsky Eugene Victorovich | Vasilevskaya Alla Evgenyevna | Skripko Svetlana Michailovna | Kolodkina Valentina Leonidovna | Ignatyev Georgiy Michailovich | Semizon Pavel Anatolyevich
Volume: 1
Issue: 2
Year: 2011
Development of an in-house protocol for the OFFGEL fractionation of plant proteins

Author(s): Delphine Vincent | Peter S. Solomon
Volume: 1
Issue: 2
Year: 2011
Label-free protein quantification on tandem mass spectra in an ion trapping device

Author(s): HuiSong Pak | Carla Pasquarello | Alexander Scherl
Volume: 1
Issue: 2
Year: 2011
The effect of Zn2+ on prostatic cell cytotoxicity caused by Trichomonas vaginalis

Author(s): Laura Isabel Vazquez-Carrillo | Laura Itzel Quintas-Granados | Rossana Arroyo | Guillermo Mendoza Hernández | Arturo González-Robles | Bertha Isabel Carvajal-Gamez | M. Elizbeth Álvarez-Sánchez
Volume: 1
Issue: 2
Year: 2011
Preliminary serological secretome analysis of Corynebacterium pseudotuberculosis

Author(s): Núbia Seyffert | Luis G.C. Pacheco | Wanderson M. Silva | Thiago L.P. Castro | Agenor V. Santos | Anderson Santos | John A. McCulloch | Maira R. Rodrigues | Simone G. Santos | Luiz M. Farias | Maria A.R. Carvalho | Adriano M.C. Pimenta | Artur Silva | Roberto Meyer | Anderson Miyoshi | Vasco Azevedo
Volume: 1
Issue: 2
Year: 2011
Electrophysiological and Proteomic Studies of Protobothrops mangshensis Venom Revealed Its High Bioactivities and Toxicities

Author(s): Yu Liu | Xiaojuan Wang | Zhe Wu | Ping Chen | Yang Xiang | Dongsong Nie | Jianmin Yi | Jizu Yi | Zhonghua Liu
Volume: 2
Issue: 2
Year: 2012
Normalization of protein at different stages in SILAC subcellular proteomics affects functional analysis

Author(s): Kerry L. Inder | Dorothy Loo | Robert G. Parton | Leonard J. Foster | Michelle M. Hill
Volume: 2
Issue: 2
Year: 2012
Proteomic analysis of bronchoalveolar lavage fluid in an equine model of asthma during a natural antigen exposure trial

Author(s): Marybeth Miskovic Feutz | C. Paige Riley | Xiang Zhang | Jiri Adamec | Craig Thompson | Laurent L. Couetil
Volume: 2
Issue: 2
Year: 2012
New insights in Trypanosoma cruzi proteomic map: further post-translational modifications and potential drug targets in Y strain epimastigotes

Author(s): Daniela Gois Beghini | André Teixeira da Silva Ferreira | Vivian Corrêa de Almeida | Marcelle Almeida Caminha | Floriano Paes Silva-Jr | Jonas Perales | Rubem Figueiredo Sadok Menna-Barreto
Volume: 2
Issue: 2
Year: 2012
Analysis of the rat primary hepatocyte nuclear proteome through sub-cellular fractionation

Author(s): Cliff Rowe | Roz E. Jenkins | Neil R. Kitteringham | B. Kevin Park | Christopher E.P. Goldring
Volume: 2
Issue: 2
Year: 2012
A robust permutation test for quantitative SILAC proteomics experiments

Author(s): Hien D. Nguyen | Ian A. Wood | Michelle M. Hill
Volume: 2
Issue: 2
Year: 2012
Comparative immunoproteome analysis of the response of susceptible A.BY/SnJ and resistant C57BL/6 mice to Coxsackievirus B3-infection

Author(s): Elke Hammer | Truong Quoc Phong | Truong Quoc Phong | Leif Steil | Manuela Gesell Salazar | Christian Scharf | Reinhard Kandolf | Stephan B. Felix | Heyo K. Kroemer | Karin Klingel | Uwe Völker
Volume: 2
Issue: 2
Year: 2012
Identification of outer membrane proteins of Edwardsiella tarda in response to high concentration of copper

Author(s): Chao Wang | Haili Zhang | Xuan-xian Peng
Volume: 2
Issue: 2
Year: 2012
Protein thiols as novel biomarkers in ecotoxicology: A case study of oxidative stress in Mytilus edulis sampled near a former industrial site in Cork Harbour, Ireland

Author(s): Sara Tedesco | Siti Nur Tahirah Jaafar | Ana Varela Coelho | David Sheehan
Volume: 2
Issue: 2
Year: 2012
Organelle proteomics in skeletal muscle biology

Author(s): Kay Ohlendieck
Volume: 2
Issue: 2
Year: 2012
A survey on coronary heart disease related signal pathways, drug targets and pharmacological interventions

Author(s): Peng Jiang | Runhui Liu | Weidong Zhang
Volume: 2
Issue: 2
Year: 2012
Integrated Omics Analysis of Sjogren’s Syndrome

Author(s): Jiye Ai | Sizhe Feng | Kaori Misuno | Shen Hu
Volume: 2
Issue: 2
Year: 2012
A Call for Benchmark Data in Mass Spectrometry-Based Proteomics

Author(s): Jens Allmer
Volume: 2
Issue: 2
Year: 2012
Hemoglobin subunit beta (HBB) is a potential biomarker for predicting response to Gefitinib in NSCLC patients

Author(s): Poh Kuan Chong | Huiyin Lee | Marie Chiew Shia Loh | Wan-Teck Lim | Siew Pang Chan | Ross Andrew Soo | Yoon Pin Lim
Volume: 1
Issue: 2
Year: 2011
Proteomic approach for molecular physiological mechanism on consecutive monoculture problems of Rehmannia glutinosa

Author(s): Wenxiong Lin | Changxun Fang | Linkun Wu | Gailing Li | Zhongyi Zhang
Volume: 1
Issue: 2
Year: 2011
Differential expression of Outer membrane proteins in early stages of meropenem-resistance in Acinetobacter baumannii

Author(s): Jitendraa Vashistt | Vishvanath Tiwari | Arti Kapil | Rajeswari R. Moganty
Volume: 1
Issue: 2
Year: 2011
Identification of spore specific allergens from Penicillium chrysogenum

Author(s): Verena Goodman | Andrea Müller | Helke Gröger-Arndt | Dietmar Schlosser | Nico Jehmlich | Regina Treudler | Irina Lehmann | Jan-Christoph Simon | Martin von Bergen
Volume: 1
Issue: 2
Year: 2011
Extraction and purification of the lectin found in the tubers of Eranthis hyemalis,winter aconite

Author(s): Oliver George | Claudia Solscheid | Emilia Bertolo | Joanna Fell | David Lisgarten
Volume: 1
Issue: 2
Year: 2011
Bacterial two-hybrid analysis of the Shewanella oneidensis MR-1 multi-component electron transfer pathway

Author(s): Jimmy Borloo | Lina De Smet | Jozef J. Van Beeumen | Bart Devreese
Volume: 1
Issue: 2
Year: 2011
Application of high content biology demonstrates differential responses of keratin acetylation sites to short chain fatty acids and to mitosis

Author(s): A.Q. Khan | L. Shaw | P.J.M. Drake | G.J. Griffiths | S.R. Brown | B.M. Corfe
Volume: 1
Issue: 2
Year: 2011
Quantitative Proteomic Analysis of Retina in Oxygen-Induced Retinopathy Mice using iTRAQ with 2D NanoLC-nanoESI-MS/MS

Author(s): Lei Zhou | Liu Xinling | Siew Kwan Koh | Li Xiaorong | Roger W. Beuerman
Volume: 1
Issue: 2
Year: 2011
Proteomic evaluation of Escherichia coli isolates from human clinical strains

Author(s): Luís Pinto | Patrícia Poeta | Hajer Radhouani | Céline Coelho | Carlos Carvalho | Jorge Rodrigues | Carmen Torres | Rui Vitorino | Pedro Domingues | Gilberto Igrejas
Volume: 1
Issue: 1
Year: 2011
Proteomic study in an Escherichia coli strain from seagulls of the Berlengas Natural Reserve of Portugal

Author(s): Luís Pinto | Patrícia Poeta | Hajer Radhouani | Céline Coelho | Carlos Carvalho | Jorge Rodrigues | Carmen Torres | Rui Vitorino | Pedro Domingues | Gilberto Igrejas
Volume: 1
Issue: 1
Year: 2011
Functional phosphoproteomics for current immunology research

Author(s): Elena López | Rune Matthiesen | Isabel López | Keith Ashman | Jesús Mendieta | Jan-Jaap Wesselink | Paulino Gómez-Puertas | Antonio Ferreira
Volume: 1
Issue: 1
Year: 2011
Mammalian Mitochondrial Proteome And Its Functions: Current Investigative Techniques And Future Perspectives On Ageing And Diabetes

Author(s): Elena Silvestri | Assunta Lombardi | Daniela Glinni | Rosalba Senese | Federica Cioffi | Antonia Lanni | Fernando Goglia | Maria Moreno | Pieter de Lange
Volume: 1
Issue: 1
Year: 2011
The salivary microbiome, assessed by a high-throughput and culture-independent approach

Author(s): Vladimir Lazarevic | Katrine Whiteson | Patrice François | Jacques Schrenzel
Volume: 1
Issue: 1
Year: 2011
A new method for measuring functional similarity of microRNAs

Author(s): Guangchuang Yu | Chuan-Le Xiao | Chuan-Le Xiao | Chun-Hua Lu | Yide Qin | Sheng Zhan | Qing-Yu He
Volume: 1
Issue: 1
Year: 2011
Quantitative Analysis of Histone Exchange during Chromatin Purification

Author(s): Stephanie Byrum | Samuel G. Mackintosh | Ricky D. Edmondson | Wang L. Cheung | Sean D. Taverna | Alan J. Tackett
Volume: 1
Issue: 1
Year: 2011
Cloud point method applied for the Apolipoprotein A-I extraction from human plasma and its identification by tandem mass spectrometry

Author(s): Aline Soriano Lopesa | Marcelo Anselmo Oseas da Silva | Fábio Cesar Gozzo | Marco Aurélio Zezzi Arruda
Volume: 1
Issue: 1
Year: 2011
Large-scale 2-D DIGE studies - guidelines to overcome pitfalls and challenges along the experimental procedure

Author(s): Franziska Dautel | Stefan Kalkhof | Saskia Trump | Irina Lehmann | Andreas Beyer | Martin von Bergen
Volume: 1
Issue: 1
Year: 2011
A novel phosphate-affinity bead with immobilized Phos-tag for separation and enrichment of phosphopeptides and phosphoproteins

Author(s): Emiko Kinoshita-Kikuta | Atsushi Yamada | Chika Inoue | Eiji Kinoshita | Tohru Koike
Volume: 1
Issue: 1
Year: 2011
Proteomic identification of plasma signatures in type 2 diabetic nephropathy

Author(s): Peir-Haur Hung | Ying-Chieh Lu | Yi-Wen Chen | Hsiu-Chuan Chou | Ping-Chiang Lyu | Ying-Ray Lee | Hong-Lin Chan
Volume: 1
Issue: 1
Year: 2011
Ultrasonic Enhanced Applications in Proteomics Workflows: single probe versus multiprobe

Author(s): Luz Fernandez | Hugo. M. Santos | J. D. Nunes-Miranda | Carlos Lodeiro | José L. Capelo
Volume: 1
Issue: 1
Year: 2011
Cell fractionation - an important tool for compartment proteomics

Author(s): Maxie Rockstroh | Stephan A. Müller | Claudia Jende | Alexandra Kerzhner | Martin von Bergen | Janina M. Tomm
Volume: 1
Issue: 1
Year: 2011
Assessing the Loss of Information through Application of the ‘Two-hit Rule’ in iTRAQ Datasets.

Author(s): Josephine Kilner | Liangjie Zhu | Saw Yen Ow | Caroline Evans | Bernard M. Corfe
Volume: 1
Issue: 1
Year: 2011
Molecular Modeling of Cathepsin B protein in different Leishmania strains

Author(s): Pawan Kumar Jayaswal | Mukta Rani | Chandra Prakash Yadav | Manas Ranjan Dikhit | Ganesh Chandra Sahoo | Pradeep Das
Volume: 1
Issue: 1
Year: 2011
Proteomic analysis of the mitochondria-enriched fraction from diabetic rat skeletal muscle

Author(s): Edel Mullen | Kay Ohlendieck
Volume: 1
Issue: 1
Year: 2011
Proteomic analysis of Chinese kale (B. alboglabra) leaves during growth

Author(s): Zuraifah Asrah Mohamad | Daranee Chokchaichamnankit | Kisana Bhinija | N. Monique Paricharttanakul | Jisnuson Svasti | Pattana Srifah Huehne | Chantragan Srisomsap
Volume: 1
Issue: 1
Year: 2011
Adaptive-BLAST: A User-defined Platform for the Study of Proteins

Author(s): Yoojin Hong | Sree V Chintapalli | Gaurav Bhardwaj | Zhenhai Zhang | Randen L. Patterson | Damian B. van Rossum
Volume: 1
Issue: 1
Year: 2011
Proteomic analysis of nitrogen stress-responsive proteins in two rice cultivars differing in N utilization efficiency

Author(s): Chen Song | Fanrong Zeng | Wu Feibo | Guoping Zhang
Volume: 1
Issue: 1
Year: 2011
A simulated annealing-based algorithm for iterative class discovery using fuzzy logic for informative gene selection

Author(s): Daniel Glez-Peña | Miguel Reboiro-Jato | Florentino Fdez-Riverola | Fernando Díaz
Volume: 1
Issue: 1
Year: 2011
Transcriptomic responses in Japanese medaka (Oryzias latipes) exposed to 17β-estradiol

Author(s): Mizukami-Murata Satomi | Kishi-Kadota Katsuyuki
Volume: 1
Issue: 1
Year: 2011
Proteomic Response to Arsenic Stress in Chromobacterium violaceum

Author(s): Alessandra Ciprandi | Rafael Azevedo Baraúna | Agenor Valadares Santos | Evonnildo Costa Gonçalves | Marta Sofia Peixe Carepo | Maria Paula Cruz Schneider | Artur Silva
Volume: 2
Issue: 1
Year: 2012
Optimisation of Downscaled Tandem Affinity Purifications to Identify Core Protein Complexes

Author(s): Eric B. Haura | Roberto Sacco | Jiannong Li | André C. Müller | Florian Grebien | Giulio Superti-Furga | Keiryn L. Bennett
Volume: 2
Issue: 1
Year: 2012
Comparative proteomic map among vanA-containing Enterococcus isolated from yellow-legged gulls

Author(s): Hajer Radhouani | Patrícia Poeta | Luís Pinto | Ricardo Monteiro | Júlio Nunes-Miranda | Susana Correia | Selma Vieira | Carlos Carvalho | Jorge Rodrigues | María López | Carmen Torres | Rui Vitorino | Pedro Domingues | Gilberto Igrejas
Volume: 2
Issue: 1
Year: 2012
Elucidation of carbon transfer in a mixed culture of Acidiphilium cryptum and Acidithiobacillus ferrooxidans using protein-based stable isotope probing

Author(s): René Kermer | Sabrina Hedrich | Martin Taubert | Sven Baumann | Michael Schlömann | D. Barrie Johnson | Martin von Bergen | Jana Seifert
Volume: 2
Issue: 1
Year: 2012
In silico directed mutagenesis using software for glycosylation sites prediction as a new step in antigen design

Author(s): Vladislav Victorovich Khrustalev | Eugene Victorovich Barkovsky
Volume: 2
Issue: 1
Year: 2012
Multivariate methods aid in pinpointing promising tumor marker candidates from colorectal biopsies

Author(s): Ana M. Rodríguez-Piñeiro | Paula Álvarez-Chaver | Francisco J. Rodríguez-Berrocal | María Páez de la Cadena | Vicenta S. Martínez-Zorzano
Volume: 2
Issue: 1
Year: 2012
An Improved Isotope Coded Affinity Tag Technology for Thiol Redox Proteomics

Author(s): Ning Zhu | Mengmeng Zhu | Shaojun Dai | Ran Zheng | Sixue Chen
Volume: 2
Issue: 1
Year: 2012
Infant gut microbial colonization and health: recent findings from metagenomics studies

Author(s): Adrien Fischer | Katrine Whiteson | Vladimir Lazarevic | Jonathan Hibbs | Patrice Francois | Jacques Schrenzel
Volume: 2
Issue: 1
Year: 2012
Starvation of Jurkat T cells causes metabolic switch from glycolysis to lipolysis as revealed by comprehensive GC-qMS

Author(s): Janina M. Tomm | Wolfgang Otto | Ulrich Servos | Bernd Bertram | Martin von Bergen | Sven Baumann
Volume: 3
Issue: 1
Year: 2013
Vascular Smooth Muscle Cells activation revealed by quantitative phosphoproteomics analysis

Author(s): Claudia Boccardi | Vittoria Matafora | Giovanni Signore | Silvia Rocchiccioli | Maria Giovanna Trivella | Emanuele Alpi | Lorenzo Citti | Angela Bachi | Antonella Cecchettini
Volume: 3
Issue: 1
Year: 2013
Values for evaluating the nutritional status of water-soluble vitamins in humans

Author(s): Katsumi Shibata | Tsutomu Fukuwatari
Volume: 3
Issue: 1
Year: 2013
Enzymatic protein digests do not assist in E. coli discrimination at the strain level using mass spectrometry

Author(s): Ricardo J. Carreira | J. D. Nunes-Miranda | Alexandre Gonçalves | Gilberto Igrejas | Patrícia Poeta | Silvana Gómez-Meire | Miguel Reboiro-Jato | Florentino Fdez-Riverola | Carlos Lodeiro | José-Luis Capelo-Martínez
Volume: 3
Issue: 1
Year: 2013
Proteome response to heat stress in the Antarctic clam Laternula elliptica

Author(s): Manuela Truebano | Angel P. Diz | Michael A.S. Thorne | Melody S. Clark | David O.F. Skibinski
Volume: 3
Issue: 1
Year: 2013
Comparison of preservation methods for bacterial cells in cytomics and proteomics

Author(s): Michael Jahn | Jana Seifert | Thomas Hübschmann | Martin von Bergen | Hauke Harms | Susann Müller
Volume: 3
Issue: 1
Year: 2013
Red Blood Cell Lipidomics analysis through HPLC-ESI-qTOF: application to red blood cell storage

Author(s): Anna Maria Timperio | Cristiana Mirasole | Angelo D’Alessandro | Lello Zolla
Volume: 3
Issue: 1
Year: 2013
-Omics fields of study related to plant-parasitic nematodes

Author(s): Juan E. Palomares-Rius | Taisei Kikuchi
Volume: 3
Issue: 1
Year: 2013
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