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Evolutionary Bioinformatics

ISSN: 1176--9343
Publisher: Libertas Academica


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A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies

Author(s): Bastien Boussau | Laurent Guéguen | Manolo Gouy
Volume: 5
Year: 2009
Initial Implementation of a comparative Data Analysis Ontology

Author(s): Francisco Prosdocimi | Brandon Chisham | Enrico Pontelli | Julie D. Thompson | Arlin Stoltzfus
Volume: 5
Year: 2009
A Comprehensive Analysis of Gene Expression Evolution Between Humans and Mice

Author(s): Yupeng Wang | Romdhane Rekaya
Volume: 5
Year: 2009
Evolution and Functional Diversification of the GLI Family of Transcription Factors in Vertebrates

Author(s): Amir Ali Abbasi | Debbie K. Goode | Saneela Amir | Karl-Heinz Grzeschik
Volume: 5
Year: 2009
Phylogenetic Applications of the Minimum Contradiction Approach on Continuous Characters

Author(s): Marc Thuillard | Didier Fraix-Burnet
Volume: 5
Year: 2009
REFGEN and TREENAMER: Automated Sequence Data Handling for Phylogenetic Analysis in the Genomic Era

Author(s): Guy Leonard | Jamie R. Stevens | Thomas A. Richards
Volume: 5
Year: 2009
Phylogenetic Analyses Reveal Monophyletic Origin of the Ergot Alkaloid Gene dmaW in Fungi

Author(s): Miao Liu | Daniel G. Panaccione | Christopher L. Schardl
Volume: 5
Year: 2009
Assessing the Evolution of Gene Expression Using Microarray Data

Author(s): Owen Z. Woody | Andrew C. Doxey | Brendan J. McConkey
Volume: 4
Year: 2008
Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology

Author(s): Anthony Levasseur | Pierre Pontarotti | Olivier Poch | Julie D. Thompson
Volume: 4
Year: 2008
Minimum Contradiction Matrices in Whole Genome Phylogenies

Author(s): Marc Thuillard
Volume: 4
Year: 2008
Estimation of Genetic Effects and Genotype-Phenotype Maps

Author(s): Arnaud Le Rouzic | José M. Álvarez-Castro
Volume: 4
Year: 2008
How to Summarize Estimates of Ancestral Divergence Times

Author(s): David A. Morrison
Volume: 4
Year: 2008
Evidence for a Complex Mosaic Genome Pattern in a Full-length Hepatitis C Virus Sequence

Author(s): R.S. Ross | J. Verbeeck | S. Viazov | P. Lemey | M. Van Ranst | M. Roggendorf
Volume: 4
Year: 2008
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification

Author(s): R. Henrik Nilsson | Erik Kristiansson | Martin Ryberg | Nils Hallenberg | Karl ­Henrik Larsson
Volume: 4
Year: 2008
Maximum Gene-Support Tree

Author(s): Yunfeng Shan
Volume: 4
Year: 2008
Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers

Author(s): Haseeb A. Khan | Ibrahim A. Arif | Ali H. Bahkali | Ahmad H. Al Farhan | Ali A. Al Homaidan
Volume: 4
Year: 2008
The ABCs of MGR with DCJ

Author(s): Zaky Adam | David Sankoff
Volume: 4
Year: 2008
SPR Distance Computation for Unrooted Trees

Author(s): Glenn Hickey | Frank Dehne | Andrew Rau-Chaplin | Christian Blouin
Volume: 4
Year: 2008
Why Should We Care About Molecular Coevolution?

Author(s): Francisco M. Codoñer | Mario A. Fares
Volume: 4
Year: 2008
Dissection of Functional Residues in Receptor Activity-Modifying Proteins Through Phylogenetic and Statistical Analyses

Author(s): Alfonso Benítez-Páez | Sonia Cárdenas-Brito
Volume: 4
Year: 2008
Electrostatic and Functional Analysis of the Seven-Bladed WD β-Propellers

Author(s): Najl V. Valeyev | A. Kristina Downing | John Sondek | Charlotte Deane
Volume: 4
Year: 2008
Identifying Coevolving Partners from Paralogous Gene Families

Author(s): Chen-Hsiang Yeang
Volume: 4
Year: 2008
Examining Ancient Inter-domain Horizontal Gene Transfer

Author(s): Francisca C. Almeida | Magdalena Leszczyniecka | Paul B. Fisher | Rob DeSalle
Volume: 4
Year: 2008
The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics

Author(s): Simon J. Greenhill | Robert Blust | Russell D. Gray
Volume: 4
Year: 2008
Expected Anomalies in the Fossil Record

Author(s): Mareike Fischer | Mike Steel
Volume: 4
Year: 2008
An Improved Implementation of Codon Adaptation Index

Author(s): Xuhua Xia
Volume: 3
Year: 2007
Mlcoalsim: Multilocus Coalescent Simulations

Author(s): Sebastian E. Ramos-Onsins | Thomas Mitchell-Olds
Volume: 3
Year: 2007
Structural Evolution of the ABC Transporter Subfamily B

Author(s): Flanagan, J.U. | Huber, T.
Volume: 3
Year: 2007
Interactions Between SNP Alleles at Multiple Loci and Variation in Skin Pigmentation in 122 Caucasians

Author(s): Sumiko Anno | Takashi Abe | Koichi Sairyo | Susumu Kudo | Takushi Yamamoto | Koretsugu Ogata | Vijay K. Goel
Volume: 3
Year: 2007
Prediction of Protein-protein Interactions on the Basis of Evolutionary Conservation of Protein Functions

Author(s): Ekaterina Kotelnikova | Andrey Kalinin | Anton Yuryev | Sergei Maslov
Volume: 3
Year: 2007
Characterization and Evolution of the Cell Cycle-Associated Mob Domain-Containing Proteins in Eukaryotes

Author(s): Nicola Vitulo | Alessandro Vezzi | Giulio Galla | Sandra Citterio | Giada Marino | Benedetto Ruperti | Monica Zermiani | Emidio Albertini | Giorgio Valle | Gianni Barcaccia
Volume: 3
Year: 2007
Choosing and Using Introns in Molecular Phylogenetics

Author(s): Simon Creer
Volume: 3
Year: 2007
MapToGenome: A Comparative Genomic Tool that Aligns Transcript Maps to Sequenced Genomes

Author(s): Srikrishna Putta | Jeramiah J. Smith | Chuck Staben | S. Randal Voss
Volume: 3
Year: 2007
Fast Genes and Slow Clades: Comparative Rates of Molecular Evolution in Mammals

Author(s): Olaf R. P. Bininda-Emonds
Volume: 3
Year: 2007
Phylogenomic Analysis Reveals Extensive Phylogenetic Mosaicism in the Human GPCR Superfamily

Author(s): Robin G. Allaby | Mathew Woodwark
Volume: 3
Year: 2007
Efficient Tree Searches with Available Algorithms

Author(s): Gonzalo Giribet
Volume: 3
Year: 2007
Identification of Conflicting Selective Effects on Highly Expressed Genes

Author(s): Paul G. Higgs | Weilong Hao | G. Brian Golding
Volume: 3
Year: 2007
Evolution of the Influenza A Virus: Some New Advances

Author(s): Raul Rabadan | Harlan Robins
Volume: 3
Year: 2007

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