Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data

Author(s): E. Holford | Haseena Rajeevan | Hongyu Zhao | Kenneth K. Kidd | Kei-Hoi Cheung
Volume: 8
Issue: Semantic Technologie
Year: 2009

A Novel Information Retrieval Model for High-Throughput Molecular Medicine Modalities

Author(s): Firas H. Wehbe | Steven H. Brown | Pierre P. Massion | Cynthia S. Gadd | Daniel R. Masys | Constantin F. Aliferis
Volume: 8
Issue: Semantic Technologie
Year: 2009

Using Semantic Web Technologies to Annotate and Align Microarray Designs

Author(s): Sebastian Szpakowski | James McCusker | Michael Krauthammer
Volume: 8
Issue: Semantic Technologie
Year: 2009

Development of the Lymphoma Enterprise Architecture Database: A caBIG(TM) Silver Level Compliant System

Author(s): Taoying Huang | Pareen J. Shenoy | Rajni Sinha | Michael Graiser | Kevin W. Bumpers | Christopher R. Flowers
Volume: 8
Issue: Semantic Technologie
Year: 2009

Semantic Integration of Cervical Cancer Data Repositories to Facilitate Multicenter Association Studies: The ASSIST Approach

Author(s): Theodoros Agorastos | Vassilis Koutkias | Manolis Falelakis | Irini Lekka | Themistoklis Mikos | Anastasios Delopoulos | Pericles A. Mitkas | Antonios Tantsis | Steven Weyers | Pascal Coorevits | Andreas M. Kaufmann | Roberto Kurzeja | Nicos Maglaveras
Volume: 8
Issue: Semantic Technologie
Year: 2009

Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes

Author(s): Spiro P. Pantazatos | Jianrong Li | Paul Pavlidis | Yves A. Lussier
Volume: 8
Year: 2009

Simulation of Different Truncated p16INK4a Forms and In Silico Study of Interaction with Cdk4

Author(s): Najmeh Fahham | Mohammad Hossein Ghahremani | Soroush Sardari | Behrouz Vaziri | Seyed Nasser Ostad
Volume: 7
Year: 2009

Quantitative Assessment of Tissue Biomarkers and Construction of a Model to Predict Outcome in Breast Cancer Using Multiple Imputation

Author(s): John W. Emerson | Marisa Dolled-Filhart | Lyndsay Harris | David L. Rimm | David P. Tuck
Volume: 7
Year: 2009

Microarray-Based Cancer Prediction Using Soft Computing Approach

Author(s): Xiaosheng Wang | Osamu Gotoh
Volume: 7
Year: 2009

A Generalized Beta Model for the Age Distribution of Cancers: Application to Pancreatic and Kidney Cancer

Author(s): Tengiz Mdzinarishvili | Michael X. Gleason | Leo Kinarsky | Simon Sherman
Volume: 7
Year: 2009

Linguistic Processing and Classification of Semi Structured Bibliographic Data on Complementary Medicine

Author(s): Thomas Ostermann | Christa K. Raak | Peter F. Matthiessen | Arndt Büssing | Hartmut Zillmann
Volume: 7
Year: 2009

The Bimodality Index: A Criterion for Discovering and Ranking Bimodal Signatures from Cancer Gene Expression Profiling Data

Author(s): Jing Wang | Sijin Wen | W. Fraser Symmans | Lajos Pusztai | Kevin R. Coombes
Volume: 7
Year: 2009

Unblocking Blockbusters: Using Boolean Text-Mining to Optimise Clinical Trial Design and Timeline for Novel Anticancer Drugs

Author(s): Richard J. Epstein
Volume: 7
Year: 2009

An Algorithm for Identifying Novel Targets of Transcription Factor Families: Application to Hypoxia-inducible Factor 1 Targets

Author(s): Yue Jiang | Bojan Cukic | Donald A. Adjeroh | Heath D. Skinner | Jie Lin | Qingxi J. Shen | Bing-Hua Jiang
Volume: 7
Year: 2009

Staging of Prostate Cancer Using Automatic Feature Selection, Sampling and Dempster-Shafer Fusion

Author(s): Sandeep Chandana | Henry Leung | Kiril Trpkov
Volume: 7
Year: 2009

New Advanced Technologies to Provide Decentralised and Secure Access to Medical Records: Case Studies in Oncology

Author(s): Catherine Quantin | Gouenou Coatrieux | François André Allaert | Maniane Fassa | Karima Bourquard | Jean-Yves Boire | Paul de Vlieger | Lydia Maigne | Vincent Breton
Volume: 7
Year: 2009

Robust Model Selection for Classification of Microarrays

Author(s): Ikumi Suzuki | Takashi Takenouchi | Miki Ohira | Shigeyuki Oba | Shin Ishii
Volume: 7
Year: 2009

Applications of Microarray Technology to Acute Myelogenous Leukemia

Author(s): Rashmi S. Goswami | Mahadeo A. Sukhai | Mariam Thomas | Patricia P. Reis | Suzanne Kamel-Reid
Volume: 7
Year: 2009

Use of Gene Expression Profiles of Peripheral Blood Lymphocytes to Distinguish BRCA1 Mutation Carriers in High Risk Breast Cancer Families

Author(s): Marie-Laure Vuillaume | Nancy Uhrhammer | Véronique Vidal | Valérie Sylvain Vidal | Valérie Chabaud | Beline Jesson | Fabrice Kwiatkowski | Yves-Jean Bignon
Volume: 7
Year: 2009

Combining Chromosomal Arm Status and Significantly Aberrant Genomic Locations Reveals New Cancer Subtypes

Author(s): Tal Shay | Wanyu L. Lambiv | Anat Reiner-Benaim | Monika E. Heg | Eytan Domany
Volume: 7
Year: 2009

Estrogen Exposure, Metabolism, and Enzyme Variants in a Model for Breast Cancer Risk Prediction

Author(s): Fritz F. Parl | Kathleen M. Egan | Chun Li | Philip S. Crooke
Volume: 7
Year: 2009

Modeling and Analyzing Gene Co-Expression in Hepatocellular Carcinoma Using Actor-Semiotic Networks and Centrality Signatures

Author(s): David C.Y. Fung
Volume: 6
Year: 2008

Efficiency Analysis of Competing Tests for Finding Differentially Expressed Genes in Lung Adenocarcinoma

Author(s): Rick Jordan | Satish Patel | Hai Hu | James Lyons-Weiler
Volume: 6
Year: 2008

Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios

Author(s): Junfeng Liu | Weichuan Yu | Baolin Wu | Hongyu Zhao
Volume: 6
Year: 2008

A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis

Author(s): Jingping Xie | Philip S. Crooke | Brett A. McKinney | Joel Soltman | Stephen J. Brandt
Volume: 6
Year: 2008

MCAM: A Database to Accelerate the Identification of Functional Cell Adhesion Molecules

Author(s): Anguraj Sadanandam | Sudipendra Nath Pal | Joe Ziskovsky | Prathibha Hegde | Rakesh K. Singh
Volume: 6
Year: 2008

Non-Negative Matrix Factorization for the Analysis of Complex Gene Expression Data: Identification of Clinically Relevant Tumor Subtypes

Author(s): Attila Frigyesi | Mattias Höglund
Volume: 6
Year: 2008

Effect of Quantitative Nuclear Image Features on Recurrence of Ductal Carcinoma In Situ (DCIS) of the Breast

Author(s): David E. Axelrod | Naomi A. Miller | H. Lavina Lickley | Jin Qian | William A. Christens-Barry | Yan Yuan | Yuejiao Fu | Judith-Anne W. Chapman
Volume: 6
Year: 2008

Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study

Author(s): Wenjuan Gu | Hyungwon Choi | Debashis Ghosh
Volume: 6
Year: 2008

An Integrative Analysis of microRNA and mRNA Expression - A Case Study

Author(s): Li-Xuan Qin
Volume: 6
Year: 2008

BRB-ArrayTools Data Archive for Human Cancer Gene Expression: A Unique and Efficient Data Sharing Resource

Author(s): Yingdong Zhao | Richard Simon
Volume: 6
Year: 2008

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

Author(s): Junghee Han | Dustin Potter | Tahsin Kurc | Greg Singer | Pearlly S. Yan | Sun Hao | Shannon Hastings | Stephen Langella | Scott Oster | Ramana V. Davuluri | Tim H.-M. Huang | Joel H. Saltz
Volume: 6
Year: 2008

Bayesian Estimation of Performance Measures of Cervical Cancer Screening Tests in the Presence of Covariates and Absence of a Gold Standard

Author(s): Edson Zangiacomi Martinez | Francisco Louzada-Neto | Sophie Françoise Mauricette Derchain | Jorge Alberto Achcar | Renata Clementino Gontijo | Luis Otávio Zanatta Sarian | Kari Juhani Syrjänen
Volume: 6
Year: 2008

What Does PLIER Really Do?

Author(s): Terry M.Therneau | Karla V.Ballman
Volume: 6
Year: 2008

Constructing Tumor Progression Pathways and Biomarker Discovery with Fuzzy Kernel Kmeans and DNA Methylation Data

Author(s): Zhenqiu Liu | Zhongmin Guo | Ming Tan
Volume: 6
Year: 2008

Detecting Role Errors in the Gene Hierarchy of the NCI Thesaurus

Author(s): Hua Min | Barry Cohen | Michael Halper | Marc Oren | Yehoshua Perl
Volume: 6
Year: 2008

An Analysis of Risk Factors for Developing Hepatocellular Carcinoma in a Group of Hepatitis C Patients with Stage 3 Fibrosis following Interferon Therapy

Author(s): Sabina Mahmood | Kazumi Togawa | Miwa Kawanaka | Gouichi Niiyama | Gotaro Yamada
Volume: 6
Year: 2008

Grammatical Immune System Evolution for Reverse Engineering Nonlinear Dynamic Bayesian Models

Author(s): B.A. McKinney | D. Tian
Volume: 6
Year: 2008

A Standards based Ontological Approach to Information Handling for use by Organizations Providing Human Tissue for Research

Author(s): Mary E. Edgerton | Carl Morrison | Virginia A. LiVolsi | Christopher A. Moskaluk | Stephen J. Qualman | M. Kay Washington | William E. Grizzle
Volume: 6
Year: 2008

Comparison of a Label-Free Quantitative Proteomic Method Based on Peptide Ion Current Area to the Isotope Coded Affinity Tag Method

Author(s): Soyoung Ryu | Byron Gallis | Young Ah Goo | Scott A. Shaffer | Dragan Radulovic | David R. Goodlett
Volume: 6
Year: 2008

Uncovering Biological Network Function via Graphlet Degree Signatures

Author(s): Tijana Milenković | Nataša Pržulj
Volume: 6
Year: 2008

Algorithmic Discovery of Methylation “Hot Spots” in DNA from Lymphoma Patients

Author(s): Chris Papageorgio | Robert Harrison | Farahnaz B. Rahmatpanah | Kristen Taylor | Wade Da-vis | Charles W. Caldwell
Volume: 6
Year: 2008

Comparisons of Robustness and Sensitivity between Cancer and Normal Cells by Microarray Data

Author(s): Liang-Hui Chu | Bor-Sen Chen
Volume: 6
Year: 2008

The Anti-tumour Agent, Cisplatin, and its Clinically Ineffective Isomer, Transplatin, Produce Unique Gene Expression Profiles in Human Cells

Author(s): Anne M. Galea | Vincent Murray
Volume: 6
Year: 2008

An Analysis Pipeline for Genome-wide Association Studies

Author(s): Stefan Stefanov | James Lautenberger | Bert Gold
Volume: 6
Year: 2008

Estimating the Proportion of True Null Hypotheses for Multiple Comparisons

Author(s): Hongmei Jiang | R.W. Doerge
Volume: 6
Year: 2008

Chromosome 20q Amplification Regulates in Vitro Response to Kinesin-5 Inhibitor

Author(s): Aimee L. Jackson | Mao Mao | Sumire Kobayashi | Teresa Ward | Matthew Biery | Hongyue Dai | Steven R. Bartz | Peter S. Linsley
Volume: 6
Year: 2008

Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios

Author(s): Rachel Karchin | Mukesh Agarwal | Andrej Sali | Fergus Couch | Mary S. Beattie
Volume: 6
Year: 2008

DNA Copy Number Analysis in Gastrointestinal Stromal Tumors Using Gene Expression Microarrays

Author(s): Cristina R. Antonescu | Kai Wu | Guoliang Leon Xing | Manqiu Cao | Yaron Turpaz | Margaret A. Leversha | Earl Hubbell | Robert G. Maki | Garrett Miyada | Raji Pillai
Volume: 6
Year: 2008

Evaluating Microarray-based Classifiers: An Overview

Author(s): A.-L. Boulesteix | C. Strobl | T. Augustin | M. Daumer
Volume: 6
Year: 2008