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Bioinformatics and Biology Insights

ISSN: 1177--9322
Publisher: Libertas Academica


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affyPara - a Bioconductor Package for Parallelized Preprocessing Algorithms of Affymetrix Microarray Data

Author(s): Markus Schmidberger | Esmeralda Vicedo | Ulrich Mansmann
Volume: 3
Year: 2009
Control Design for Signal Transduction Networks

Author(s): Chun-Liang Lin | Yuan-Wei Liu | Chia-Hua Chuang
Volume: 3
Year: 2009
Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences

Author(s): Surendra S Negi | Werner Braun
Volume: 3
Year: 2009
Universal Features for the Classification of Coding and Non-Coding DNA Sequences

Author(s): Nicolas Carels | Ramon Vida | Diego Frías
Volume: 3
Year: 2009
Predicting Consensus Structures for RNA Alignments Via Pseudo-Energy Minimization

Author(s): Junilda Spirollari | Jason T.L. Wang | Kaizhong Zhang | Vivian Bellofatto | Yongkyu Park | Bruce A. Shapiro
Volume: 3
Year: 2009
Association of Putative Members to Family of Mosquito Odorant Binding Proteins: Scoring Scheme Using Fuzzy Functional Templates and Cys Residue Positions

Author(s): Malini Manoharan | Kannan Sankar | Bernard Offmann | Sowdhamini Ramanathan
Volume: 2013
Issue: 7
Year: 2013
Identification and Insilico Analysis of Retinoblastoma Serum microRNA Profile and Gene Targets Towards Prediction of Novel Serum Biomarkers

Author(s): Madhu Beta | Nalini Venkatesan | Madavan Vasudevan | Umashankar Vetrivel | Vikas Khetan | Subramanian Krishnakumar
Volume: 2013
Issue: 7
Year: 2013
Systematic Verification of Upstream Regulators of a Computable Cellular Proliferation Network Model on Non-Diseased Lung Cells Using a Dedicated Dataset

Author(s): Vincenzo Belcastro | Carine Poussin | Stephan Gebel | Carole Mathis | Walter K. Schlage | Rosemarie B. Lichtner | Sibille Quadt-Humme | Sandra Wagner | Julia Hoeng | Manuel C. Peitsch
Volume: 2013
Issue: 7
Year: 2013
Knowledge Discovery in Variant Databases Using Inductive Logic Programming

Author(s): Hoan Nguyen | Tien-Dao Luu | Olivier Poch | Julie D. Thompson
Volume: 2013
Issue: 7
Year: 2013
miR-Explore: Predicting MicroRNA Precursors by Class Grouping and Secondary Structure Positional Alignment

Author(s): Bram Sebastian | Samuel E. Aggrey
Volume: 2013
Issue: 7
Year: 2013
On Crowd-verification of Biological Networks

Author(s): The sbv IMPROVER project team (in alphabetical order): Sam Ansari | Jean Binder | Stephanie Boue | Anselmo Di Fabio | William Hayes | Julia Hoeng | Anita Iskandar | Robin Kleiman | Raquel Norel | Bruce O'Neel | Manuel C. Peitsch | Carine Poussin | Dexter Pratt | Kahn Rhrissorrakrai | Walter K. Schlage | Gustavo Stolovitzky | Marja Talikka
Volume: 2013
Issue: 7
Year: 2013
A Statistical Method without Training Step for the Classification of Coding Frame in Transcriptome Sequences

Author(s): Nicolas Carels | Diego Frias
Volume: 2013
Issue: 7
Year: 2013
ChIP-Seq Data Mining: Remarkable Differences in NRSF/REST Target Genes between Human ESC and ESC-Derived Neurons

Author(s): Jun-ichi Satoh | Natsuki Kawana | Yoji Yamamoto
Volume: 2013
Issue: 7
Year: 2013
Association Between a Multi-Locus Genetic Risk Score and Inflammatory Bowel Disease

Author(s): Pingzhao Hu | Aleixo M. Muise | Xiang Xing | John H. Brumell | Mark S. Silverberg | Wei Xu
Volume: 2013
Issue: 7
Year: 2013
Automatic Identification of Algal Community from Microscopic Images

Author(s): Natchimuthu Santhi | Chinnaraj Pradeepa | Parthasarathy Subashini | Senthil Kalaiselvi
Volume: 2013
Issue: 7
Year: 2013
Integrative Approach for Computationally Inferring Interactions between the Alpha and Beta Subunits of the Calcium-Activated Potassium Channel (BK): a Docking Study

Author(s): Janneth González | Angela Gálvez | Ludis Morales | George E. Barreto | Francisco Capani | Omar Sierra | Yolima Torres
Volume: 2013
Issue: 7
Year: 2013
Construction of a Computable Network Model for DNA Damage, Autophagy, Cell Death, and Senescence

Author(s): Stephan Gebel | Rosemarie B. Lichtner | Brian Frushour | Walter K. Schlage | Vy Hoang | Marja Talikka | Arnd Hengstermann | Carole Mathis | Emilija Veljkovic | Michael Peck | Manuel C. Peitsch | Renee Deehan | Julia Hoeng | Jurjen W. Westra
Volume: 2013
Issue: 7
Year: 2013
Three Dimensional Structure Prediction of Fatty Acid Binding Site on Human Transmembrane Receptor CD36

Author(s): Zineb Tarhda | Oussama Semlali | Anas Kettani | Ahmed Moussa | Nada A. Abumrad | Azeddine Ibrahimi
Volume: 2013
Issue: 7
Year: 2013
Human Retrovirus Codon Usage from tRNA Point of View: Therapeutic Insights

Author(s): Diego Frias | Joana P. Monteiro-Cunha | Aline C. Mota-Miranda | Vagner S. Fonseca | Tulio de Oliveira | Bernardo Galvao-Castro | Luiz C. J. Alcantara
Volume: 2013
Issue: 7
Year: 2013
Computational Small RNA Prediction in Bacteria

Author(s): Jayavel Sridhar | Paramasamy Gunasekaran
Volume: 2013
Issue: 7
Year: 2013
A Modular Cell-Type Focused Inflammatory Process Network Model for Non-Diseased Pulmonary Tissue

Author(s): Jurjen W. Westra | Walter K. Schlage | Arnd Hengstermann | Stephan Gebel | Carole Mathis | Ty Thomson | Ben Wong | Vy Hoang | Emilija Veljkovic | Michael Peck | Rosemarie B. Lichtner | Dirk Weisensee | Marja Talikka | Renee Deehan | Julia Hoeng | Manuel C. Peitsch
Volume: 2013
Issue: 7
Year: 2013
Molecular Insights on Post-chemotherapy Retinoblastoma by Microarray Gene Expression Analysis

Author(s): Venkatesan Nalini | Ramya Segu | Perinkulam Ravi Deepa | Vikas Khetan | Madavan Vasudevan | Subramanian Krishnakumar
Volume: 2013
Issue: 7
Year: 2013
The Aquaporin Channel Repertoire of the Tardigrade Milnesium tardigradum

Author(s): Markus A. Grohme | Brahim Mali | Weronika Welnicz | Stephanie Michel | Ralph O. Schill | Marcus Frohme
Volume: 2013
Issue: 7
Year: 2013
A Computational Assay to Design an Epitope-Based Peptide Vaccine Against Saint Louis Encephalitis Virus

Author(s): Md. Anayet Hasan | Mehjabeen Hossain | Md. Jibran Alam
Volume: 2013
Issue: 7
Year: 2013
A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences

Author(s): Riccardo Percudani
Volume: 2013
Issue: 7
Year: 2013
Bioinformatics and Gene Network Analyses of the Swine Mammary Gland Transcriptome during Late Gestation

Author(s): Wangsheng Zhao | Khuram Shahzad | Mingfeng Jiang | Daniel E. Graugnard | Sandra L. Rodriguez-Zas | Jun Luo | Juan J. Loor | Walter L. Hurley
Volume: 2013
Issue: 7
Year: 2013
Computational Design of Targeted Inhibitors of Polo-Like Kinase 1 (Plk1)

Author(s): Krupa S. Jani | D.S. Dalafave
Volume: 2012
Issue: 6
Year: 2012
Methods of Combinatorial Optimization to Reveal Factors Affecting Gene Length

Author(s): Alexander Bolshoy | Tatiana Tatarinova
Volume: 2012
Issue: 6
Year: 2012
A Fast Quad-Tree Based Two Dimensional Hierarchical Clustering

Author(s): Priscilla Rajadurai | Swamynathan Sankaranarayanan
Volume: 2012
Issue: 6
Year: 2012
Integrative Structural Modelling of the Cardiac Thin Filament: Energetics at the Interface and Conservation Patterns Reveal a Spotlight on Period 2 of Tropomyosin

Author(s): Margaret Sunitha S | John A. Mercer | James A. Spudich | Ramanathan Sowdhamini
Volume: 2012
Issue: 6
Year: 2012
The Core Mouse Response to Infection by Neospora Caninum Defined by Gene Set Enrichment Analyses

Author(s): John Ellis | Stephen Goodswen | Paul J Kennedy | Stephen Bush
Volume: 2012
Issue: 6
Year: 2012
A Novel Approach for the Simultaneous Analysis of Common and Rare Variants in Complex Traits

Author(s): Ao Yuan | Guanjie Chen | Yanxun Zhou | Amy Bentley | Charles Rotimi
Volume: 2012
Issue: 6
Year: 2012
Functional Annotation Analytics of Bacillus Genomes Reveals Stress Responsive Acetate Utilization and Sulfate Uptake in the Biotechnologically Relevant Bacillus megaterium

Author(s): Baraka S. Williams | Raphael D. Isokpehi | Andreas N. Mbah | Antoinesha L. Hollman | Christina O. Bernard | Shaneka S. Simmons | Wellington K. Ayensu | Bianca L. Garner
Volume: 2012
Issue: 6
Year: 2012
Simultaneous Analysis of Common and Rare Variants in Complex Traits: Application to SNPs (SCARVAsnp)

Author(s): Guanjie Chen | Ao Yuan | Yanxun Zhou | Amy R. Bentley | Jie Zhou | Weiping Chen | Daniel Shriner | Adebowale Adeyemo | Charles N. Rotimi
Volume: 2012
Issue: 6
Year: 2012
BioNetwork Bench: Database and Software for Storage, Query, and Analysis of Gene and Protein Networks

Author(s): Oksana Kohutyuk | Fadi Towfic | M. Heather West Greenlee | Vasant Honavar
Volume: 2012
Issue: 6
Year: 2012
White Blood Cell Differentials Enrich Whole Blood Expression Data in the Context of Acute Cardiac Allograft Rejection

Author(s): Casey P. Shannon | Zsuzsanna Hollander,Janet Wilson-McManus | Robert Balshaw | Raymond T. Ng | Robert McMaster | Bruce M. McManus | Paul A. Keown | Scott J. Tebbutt
Volume: 2012
Issue: 6
Year: 2012
Different Evolutionary Modifications as a Guide to Rewire Two-Component Systems

Author(s): Beate Krueger | Torben Friedrich | Frank Förster | Jörg Bernhardt | Roy Gross | Thomas Dandekar
Volume: 2012
Issue: 6
Year: 2012
Homology Modeling and Molecular Dynamics Simulation Studies of a Marine Alkaline Protease

Author(s): Xiaofeng Ji | Wei Wang | Yuan Zheng | Jianhua Hao | Mi Sun
Volume: 2012
Issue: 6
Year: 2012
DNA Structural Properties in the Classification of Genomic Transcription Regulation Elements

Author(s): Pieter Meysman | Kathleen Marchal | Kristof Engelen
Volume: 2012
Issue: 6
Year: 2012
The Role of Electrostatic Interactions on Klentaq1 Insight for Domain Separation

Author(s): Santi Nurbaiti | Muhamad A. Martoprawiro | Akhmaloka | Rukman Hertadi
Volume: 2012
Issue: 6
Year: 2012
Structural and Functional Insights on the Myosin Superfamily

Author(s): Divya P. Syamaladevi, | James A. Spudich,,* | R. Sowdhamini,*
Volume: 2012
Issue: 6
Year: 2012
Analyzing Thiol-Dependent Redox Networks in the Presence of Methylene Blue and Other Antimalarial Agents with RT-PCR- Supported in silico Modeling

Author(s): J. Zirkel | A. Cecil | F. Schäfer | S. Rahlfs | A. Ouedraogo | K. Xiao | S. Sawadogo | B. Coulibaly | K. Becker | T. Dandekar
Volume: 2012
Issue: 6
Year: 2012
The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes

Author(s): André E.R. Soares | Carlos G. Schrago
Volume: 2012
Issue: 6
Year: 2012
Myosinome: A Database of Myosins from Select Eukaryotic Genomes to Facilitate Analysis of Sequence-Structure-Function Relationships

Author(s): Divya P. Syamaladevi | Margaret Sunitha S | S. Kalaimathy | Chandrashekar C. Reddy | Mohammed Iftekhar | Shaik N. Pasha | R. Sowdhamini
Volume: 2012
Issue: 6
Year: 2012
Simple F Test Reveals Gene-Gene Interactions in Case-Control Studies

Author(s): Guanjie Chen | Ao Yuan | Jie Zhou | Amy R. Bentley | Adebowale Adeyemo | Charles N. Rotimi
Volume: 2012
Issue: 6
Year: 2012
Molecular Modelling of Oligomeric States of DmOR83b, an Olfactory Receptor in D. melanogaster

Author(s): K. Harini | R. Sowdhamini
Volume: 2012
Issue: 6
Year: 2012
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