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BMC Bioinformatics

ISSN: 1471--2105
Publisher: BioMed Central


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Proceedings of the 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

Author(s): Wren Jonathan | Wilkins Dawn | Fuscoe James | Bridges Susan | Winters-Hilt Stephen | Gusev Yuriy
Volume: 9
Issue: Suppl 9
Year: 2008
Validation of an NSP-based (negative selection pattern) gene family identification strategy

Author(s): Frank Ronald | Kandoth Cyriac | Ercal Fikret
Volume: 9
Issue: Suppl 9
Year: 2008
Large-scale directional relationship extraction and resolution

Author(s): Giles Cory | Wren Jonathan
Volume: 9
Issue: Suppl 9
Year: 2008
Systems biology approach to identification of biomarkers for metastatic progression in cancer

Author(s): Ptitsyn Andrey | Weil Michael | Thamm Douglas
Volume: 9
Issue: Suppl 9
Year: 2008
Very Important Pool (VIP) genes – an application for microarray-based molecular signatures

Author(s): Su Zhenqiang | Hong Huixiao | Fang Hong | Shi Leming | Perkins Roger | Tong Weida
Volume: 9
Issue: Suppl 9
Year: 2008
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining

Author(s): Huan Tianxiao | Sivachenko Andrey | Harrison Scott | Chen Jake
Volume: 9
Issue: Suppl 9
Year: 2008
A structural approach for finding functional modules from large biological networks

Author(s): Mete Mutlu | Tang Fusheng | Xu Xiaowei | Yuruk Nurcan
Volume: 9
Issue: Suppl 9
Year: 2008
From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells

Author(s): Dozmorov Mikhail | Kyker Kimberly | Hauser Paul | Saban Ricardo | Buethe David | Dozmorov Igor | Centola Michael | Culkin Daniel | Hurst Robert
Volume: 9
Issue: Suppl 9
Year: 2008
Time-dependent ARMA modeling of genomic sequences

Author(s): Zielinski Jerzy | Bouaynaya Nidhal | Schonfeld Dan | O'Neill William
Volume: 9
Issue: Suppl 9
Year: 2008
Clustering ionic flow blockade toggles with a Mixture of HMMs

Author(s): Churbanov Alexander | Winters-Hilt Stephen
Volume: 9
Issue: Suppl 9
Year: 2008
Hybrid MM/SVM structural sensors for stochastic sequential data

Author(s): Roux Brian | Winters-Hilt Stephen
Volume: 9
Issue: Suppl 9
Year: 2008
MTAP: The Motif Tool Assessment Platform

Author(s): Quest Daniel | Dempsey Kathryn | Shafiullah Mohammad | Bastola Dhundy | Ali Hesham
Volume: 9
Issue: Suppl 9
Year: 2008
Testing for treatment effects on gene ontology

Author(s): Lee Taewon | Desai Varsha | Velasco Cruz | Reis Robert | Delongchamp Robert
Volume: 9
Issue: Suppl 9
Year: 2008
Exhaustive prediction of disease susceptibility to coding base changes in the human genome

Author(s): Kulkarni Vinayak | Errami Mounir | Barber Robert | Garner Harold
Volume: 9
Issue: Suppl 9
Year: 2008
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

Author(s): Shi Leming | Jones Wendell | Jensen Roderick | Harris Stephen | Perkins Roger | Goodsaid Federico | Guo Lei | Croner Lisa | Boysen Cecilie | Fang Hong | Qian Feng | Amur Shashi | Bao Wenjun | Barbacioru Catalin | Bertholet Vincent | Cao Xiaoxi | Chu Tzu-Ming | Collins Patrick | Fan Xiao-hui | Frueh Felix | Fuscoe James | Guo Xu | Han Jing | Herman Damir | Hong Huixiao | Kawasaki Ernest | Li Quan-Zhen | Luo Yuling | Ma Yunqing | Mei Nan | Peterson Ron | Puri Raj | Shippy Richard | Su Zhenqiang | Sun Yongming | Sun Hongmei | Thorn Brett | Turpaz Yaron | Wang Charles | Wang Sue | Warrington Janet | Willey James | Wu Jie | Xie Qian | Zhang Liang | Zhang Lu | Zhong Sheng | Wolfinger Russell | Tong Weida
Volume: 9
Issue: Suppl 9
Year: 2008
Comprehensive analysis of circadian periodic pattern in plant transcriptome

Author(s): Ptitsyn Andrey
Volume: 9
Issue: Suppl 9
Year: 2008
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

Author(s): Hong Huixiao | Su Zhenqiang | Ge Weigong | Shi Leming | Perkins Roger | Fang Hong | Xu Joshua | Chen James | Han Tao | Kaput Jim | Fuscoe James | Tong Weida
Volume: 9
Issue: Suppl 9
Year: 2008
Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008 PDF available

Author(s): Bairoch Amos | Cohen-Boulakia Sarah | Froidevaux Christine
Volume: 9
Issue: Suppl 8
Year: 2008
Integrating biological data – the Distributed Annotation System PDF available

Author(s): Jenkinson Andrew | Albrecht Mario | Birney Ewan | Blankenburg Hagen | Down Thomas | Finn Robert | Hermjakob Henning | Hubbard Tim | Jimenez Rafael | Jones Philip | Kähäri Andreas | Kulesha Eugene | Macías José | Reeves Gabrielle | Prlić Andreas
Volume: 9
Issue: Suppl 8
Year: 2008
Integrating protein-protein interactions and text mining for protein function prediction PDF available

Author(s): Jaeger Samira | Gaudan Sylvain | Leser Ulf | Rebholz-Schuhmann Dietrich
Volume: 9
Issue: Suppl 8
Year: 2008
Bioinformatics analysis of immune response to group A streptococcal sepsis integrating quantitative trait loci mapping with genome-wide expression studies

Author(s): Abdeltawab Nourtan | Kansal Rita | Rowe Sarah | Gardner Lidia | Brannen Charity | Nooh Mohammed | Mukundan Santhosh | Abdelsamed Hossam | Attia Ramy | Taylor William | Lu Lu | Williams Robert | Kotb Malak
Volume: 9
Issue: Suppl 7
Year: 2008
Candidate genes within known QTL of type 1 diabetes from mouse models

Author(s): Gu Weikuan | Gerling Ivan | Jiao Yan | Gao Peng | Xiong Qing
Volume: 9
Issue: Suppl 7
Year: 2008
Buffered codons in human transcriptional units

Author(s): Mahdi Rami | Rouchka Eric
Volume: 9
Issue: Suppl 7
Year: 2008
Microarray analysis of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)

Author(s): Schuck Julie | Smith Michael | Li Xiaohong | Cooper Nigel
Volume: 9
Issue: Suppl 7
Year: 2008
Proteome discovery pipeline for mass spectrometry-based proteomics

Author(s): Gough Erik | Oh Cheolhwan | He Jing | Riley Catherine | Buck Charles | Zhang Xiang
Volume: 9
Issue: Suppl 7
Year: 2008
Haplotypes of the imprinted insulin gene are associated with size for gestational age and umbilical cord IGF-II levels

Author(s): Adkins Ronald | Krushkal Julia | Klauser Chad | Magann Everett | Somes Grant | Fain John | Morrison John
Volume: 9
Issue: Suppl 7
Year: 2008
De novo identification of in vivo binding sites from ChIP-chip data

Author(s): Jin Victor | Rabinovich Alina | O'Geen Henny | Iyengar Sushma | Farnham Peggy
Volume: 9
Issue: Suppl 7
Year: 2008
Modeling mis-folded lysozyme aggregates

Author(s): Chotikasemsri Pongsathorn | Rinehart Claire
Volume: 9
Issue: Suppl 7
Year: 2008
Genomic analysis of gene regulation complexity

Author(s): Barker Brandon | Lund Jim
Volume: 9
Issue: Suppl 7
Year: 2008
Gene classification for microarray data with multiple time measurements

Author(s): Quiton Jonathan | Rinehart Claire | Chavarria-Smith Joseph | Rice Nancy
Volume: 9
Issue: Suppl 7
Year: 2008
Model of visual attention for video sequences

Author(s): Milanova Mariofanna
Volume: 9
Issue: Suppl 7
Year: 2008
Robust detection method for differential expression studies

Author(s): Rai Shesh | Pounds Stanley
Volume: 9
Issue: Suppl 7
Year: 2008
Evaluation of pooled allelotyping versus individual genotyping for genome-wide association analysis of complex disease

Author(s): Pratap Siddharth | Williams Scott | Levy Shawn
Volume: 9
Issue: Suppl 7
Year: 2008
QTL mapping arthritis traits in CXB mice

Author(s): Marshall Dana | Peirce Jeremy | Zhou Fang | Lu Lu | Williams Rob | Manly Ken | Stuart John
Volume: 9
Issue: Suppl 7
Year: 2008
MedSurv: a software application for creating, conducting and managing medical surveys and questionnaires

Author(s): Ware Zachary | Selby Lisbeth | Jaromczyk Jerzy
Volume: 9
Issue: Suppl 7
Year: 2008
i-SEGOPubmed: a web interface for semantic enabled browsing of PubMed using Gene Ontology

Author(s): Yeasin Mohammed | Vanteru Bhanu | Shaik Jahangheer | Ahmed Faruk
Volume: 9
Issue: Suppl 7
Year: 2008
A permutation-based method to identify loss-of-heterozygosity using paired genotype microarray data

Author(s): Pounds Stan | Cheng Cheng | Yang Wenjian | Onar Arzu | Hartford Christine | Raimondi Susana | Relling Mary
Volume: 9
Issue: Suppl 7
Year: 2008
Scientific Laboratory Information Management System: Tissue Bank

Author(s): McDonald Chanchai | Kulkarni Anand | Viangteeravat Teeradache
Volume: 9
Issue: Suppl 7
Year: 2008
Analysis of the transcriptome of CD4 T-Lymphocytes from young Non-Obese Diabetic (NOD) mice suggests a key role for cytokines and apoptosis

Author(s): Kakoola Dorothy | Lenchik Nataliya | Curcio-Brint Anita | Gerling Ivan
Volume: 9
Issue: Suppl 7
Year: 2008
Techniques for the analysis of trichome Pelagonium xhortorum expressed sequence tags

Author(s): Morris Joseph | Rouchka Eric | Schultz David
Volume: 9
Issue: Suppl 7
Year: 2008
Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008

Author(s): Rouchka Eric | Krushkal Julia | Goldowitz Daniel
Volume: 9
Issue: Suppl 7
Year: 2008
Using a literature-based NMF model for discovering gene functional relationships

Author(s): Tjioe Elina | Berry Michael | Homayouni Ramin | Heinrich Kevin
Volume: 9
Issue: Suppl 7
Year: 2008
A computational and analysis tool for proteomics research

Author(s): Niu Xinnan | McAfee K Jill | Duncan Dexter | Assink Michael | Link Andrew
Volume: 9
Issue: Suppl 7
Year: 2008
Global profile of genes regulated by securin

Author(s): Kakar Sham | Panguluri Siva | Waigel Sabine
Volume: 9
Issue: Suppl 7
Year: 2008
Random number generation for DNA-based security circuitry

Author(s): Bogard Christy | Rouchka Eric | Arazi Benjamin
Volume: 9
Issue: Suppl 7
Year: 2008
ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses

Author(s): Stokes Todd | Torrance JT | Li Henry | Wang May
Volume: 9
Issue: Suppl 6
Year: 2008
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