A stable iterative method for refining discriminative gene clusters

Author(s): Xu Min | Zhu Mengxia | Zhang Louxin
Volume: 9
Issue: Suppl 2
Year: 2008

In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme

Author(s): Yuan Jiazheng | Zhu Mengxia | Lightfoot David | Iqbal M Javed | Yang Jack | Meksem Khalid
Volume: 9
Issue: Suppl 2
Year: 2008

Gene selection algorithm by combining reliefF and mRMR

Author(s): Zhang Yi | Ding Chris | Li Tao
Volume: 9
Issue: Suppl 2
Year: 2008

Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference

Author(s): Yang Yunfeng | Zhu Mengxia | Wu Liyou | Zhou Jizhong
Volume: 9
Issue: Suppl 2
Year: 2008

Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes

Author(s): Yang Jack | Niemierko Andrzej | Yang Mary | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008

Improving the specificity of exon prediction using comparative genomics

Author(s): Wu Jing
Volume: 9
Issue: Suppl 2
Year: 2008

Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells

Author(s): Wang Guohua | Wang Yadong | Feng Weixing | Wang Xin | Yang Jack | Zhao Yuming | Wang Yue | Liu Yunlong
Volume: 9
Issue: Suppl 2
Year: 2008

Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions

Author(s): Ren Siyuan | Uversky Vladimir | Chen Zhengjun | Dunker A Keith | Obradovic Zoran
Volume: 9
Issue: Suppl 2
Year: 2008

Predicting protein disorder by analyzing amino acid sequence

Author(s): Yang Jack | Yang Mary
Volume: 9
Issue: Suppl 2
Year: 2008

Batch Blast Extractor: an automated blastx parser application

Author(s): Pirooznia Mehdi | Perkins Edward | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008

A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology

Author(s): Feng Weixing | Liu Yunlong | Wu Jiejun | Nephew Kenneth | Huang Tim | Li Lang
Volume: 9
Issue: Suppl 2
Year: 2008

Selecting subsets of newly extracted features from PCA and PLS in microarray data analysis

Author(s): Li Guo-Zheng | Bu Hua-Long | Yang Mary | Zeng Xue-Qiang | Yang Jack
Volume: 9
Issue: Suppl 2
Year: 2008

Protein intrinsic disorder toolbox for comparative analysis of viral proteins

Author(s): Goh Gerard | Dunker A Keith | Uversky Vladimir
Volume: 9
Issue: Suppl 2
Year: 2008

Approaches to reduce false positives and false negatives in the analysis of microarray data: applications in type 1 diabetes research

Author(s): Wu Jian | Lenchik Nataliya | Gerling Ivan
Volume: 9
Issue: Suppl 2
Year: 2008

ILOOP – a web application for two-channel microarray interwoven loop design

Author(s): Pirooznia Mehdi | Gong Ping | Yang Jack | Yang Mary | Perkins Edward | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008

Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data

Author(s): Bryan Kenneth | Cunningham Pádraig
Volume: 9
Issue: Suppl 2
Year: 2008

Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning

Author(s): Harris Cole | Ghaffari Noushin
Volume: 9
Issue: Suppl 2
Year: 2008

Diversity of core promoter elements comprising human bidirectional promoters

Author(s): Yang Mary | Elnitski Laura
Volume: 9
Issue: Suppl 2
Year: 2008

Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research

Author(s): Yang Jack | Yang Mary | Arabnia Hamid | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008

The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications

Author(s): Halperin Inbal | Glazer Dariya | Wu Shirley | Altman Russ
Volume: 9
Issue: Suppl 2
Year: 2008

Use artificial neural network to align biological ontologies

Author(s): Huang Jingshan | Dang Jiangbo | Huhns Michael | Zheng W Jim
Volume: 9
Issue: Suppl 2
Year: 2008

Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain

Author(s): Huang Heng | Nguyen Nha | Oraintara Soontorn | Vo An
Volume: 9
Issue: Suppl 2
Year: 2008

Tumor classification ranking from microarray data

Author(s): Hewett Rattikorn | Kijsanayothin Phongphun
Volume: 9
Issue: Suppl 2
Year: 2008

MeDor: a metaserver for predicting protein disorder

Author(s): Lieutaud Philippe | Canard Bruno | Longhi Sonia
Volume: 9
Issue: Suppl 2
Year: 2008

Selecting informative genes for discriminant analysis using multigene expression profiles

Author(s): Yan Xin | Zheng Tian
Volume: 9
Issue: Suppl 2
Year: 2008

Phylogenetic reconstruction from transpositions

Author(s): Yue Feng | Zhang Meng | Tang Jijun
Volume: 9
Issue: Suppl 2
Year: 2008

The unfoldomics decade: an update on intrinsically disordered proteins

Author(s): Dunker A Keith | Oldfield Christopher | Meng Jingwei | Romero Pedro | Yang Jack | Chen Jessica | Vacic Vladimir | Obradovic Zoran | Uversky Vladimir
Volume: 9
Issue: Suppl 2
Year: 2008

Inferring gene regulatory networks by thermodynamic modeling

Author(s): Chen Chieh-Chun | Zhong Sheng
Volume: 9
Issue: Suppl 2
Year: 2008

Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida

Author(s): Gong Ping | Guan Xin | Inouye Laura | Deng Youping | Pirooznia Mehdi | Perkins Edward
Volume: 9
Issue: Suppl 1
Year: 2008

Using RNase sequence specificity to refine the identification of RNA-protein binding regions

Author(s): Wang Xin | Wang Guohua | Shen Changyu | Li Lang | Wang Xinguo | Mooney Sean | Edenberg Howard | Sanford Jeremy | Liu Yunlong
Volume: 9
Issue: Suppl 1
Year: 2008

HMMEditor: a visual editing tool for profile hidden Markov model

Author(s): Dai Jianyong | Cheng Jianlin
Volume: 9
Issue: Suppl 1
Year: 2008

Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response

Author(s): Yang Yunfeng | Harris Daniel | Luo Feng | Wu Liyou | Parsons Andrea | Palumbo Anthony | Zhou Jizhong
Volume: 9
Issue: Suppl 1
Year: 2008

Algorithms to estimate the lower bounds of recombination with or without recurrent mutations

Author(s): Liu Xiaoming | Fu Yun-Xin
Volume: 9
Issue: Suppl 1
Year: 2008

Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome

Author(s): Wang Guohua | Wang Xin | Wang Yadong | Yang Jack | Li Lang | Nephew Kenneth | Edenberg Howard | Zhou Feng | Liu Yunlong
Volume: 9
Issue: Suppl 1
Year: 2008

Supervised learning-based tagSNP selection for genome-wide disease classifications

Author(s): Liu Qingzhong | Yang Jack | Chen Zhongxue | Yang Mary Qu | Sung Andrew | Huang Xudong
Volume: 9
Issue: Suppl 1
Year: 2008

A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions

Author(s): Yang Jack | Yang Mary Qu | Luo Zuojie | Ma Yan | Li Jianling | Deng Youping | Huang Xudong
Volume: 9
Issue: Suppl 1
Year: 2008

Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition

Author(s): Habib Tanwir | Zhang Chaoyang | Yang Jack | Yang Mary Qu | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008

Investigation of transmembrane proteins using a computational approach

Author(s): Yang Jack | Yang Mary | Dunker A Keith | Deng Youping | Huang Xudong
Volume: 9
Issue: Suppl 1
Year: 2008

Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins

Author(s): Mao Jinghe | Habib Tanwir | Shenwu Ming | Kang Baobin | Allen Wilbur | Robertson LaShonda | Yang Jack | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008

Transcription network construction for large-scale microarray datasets using a high-performance computing approach

Author(s): Zhu Mengxia (Michelle) | Wu Qishi
Volume: 9
Issue: Suppl 1
Year: 2008

Prediction-based approaches to characterize bidirectional promoters in the mammalian genome

Author(s): Yang Mary Qu | Elnitski Laura
Volume: 9
Issue: Suppl 1
Year: 2008

Bayesian biclustering of gene expression data

Author(s): Gu Jiajun | Liu Jun
Volume: 9
Issue: Suppl 1
Year: 2008

Protein disorder prediction at multiple levels of sensitivity and specificity

Author(s): Hecker Joshua | Yang Jack | Cheng Jianlin
Volume: 9
Issue: Suppl 1
Year: 2008

Efficient non-unique probes selection algorithms for DNA microarray

Author(s): Deng Ping | Thai My | Ma Qingkai | Wu Weili
Volume: 9
Issue: Suppl 1
Year: 2008

Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

Author(s): Oldfield Christopher | Meng Jingwei | Yang Jack | Yang Mary Qu | Uversky Vladimir | Dunker A Keith
Volume: 9
Issue: Suppl 1
Year: 2008

Stability analysis of genetic regulatory network with additive noises

Author(s): Jin Yufang | Lindsey Merry
Volume: 9
Issue: Suppl 1
Year: 2008

Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection

Author(s): Yang Jack | Li Guo-Zheng | Meng Hao-Hua | Yang Mary | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat

Author(s): Yue Feng | Cui Liying | dePamphilis Claude | Moret Bernard | Tang Jijun
Volume: 9
Issue: Suppl 1
Year: 2008

xMAN: extreme MApping of OligoNucleotides

Author(s): Li Wei | Carroll Jason | Brown Myles | Liu X Shirley
Volume: 9
Issue: Suppl 1
Year: 2008

Semantically linking and browsing PubMed abstracts with gene ontology

Author(s): Vanteru Bhanu | Shaik Jahangheer | Yeasin Mohammed
Volume: 9
Issue: Suppl 1
Year: 2008