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BMC Structural Biology

ISSN: 1472--6807
Publisher: BioMed Central


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The cyanobacterial cell division factor Ftn6 contains an N-terminal DnaD-like domain

Author(s): Marbouty Martial | Saguez Cyril | Chauvat Franck
Volume: 9
Issue: 1
Year: 2009
Improving consensus structure by eliminating averaging artifacts

Author(s): KC Dukka
Volume: 9
Issue: 1
Year: 2009
Structural insights into the substrate tunnel of Saccharomyces cerevisiae carbonic anhydrase Nce103

Author(s): Teng Yan-Bin | Jiang Yong-Liang | He Yong-Xing | He Wei-Wei | Lian Fu-Ming | Chen Yuxing | Zhou Cong-Zhao
Volume: 9
Issue: 1
Year: 2009
Structural and functional characteristics of xenavidin, the first frog avidin from Xenopus tropicalis

Author(s): Määttä Juha | Helppolainen Satu | Hytönen Vesa | Johnson Mark | Kulomaa Markku | Airenne Tomi | Nordlund Henri
Volume: 9
Issue: 1
Year: 2009
Mesothelin, Stereocilin, and Otoancorin are predicted to have superhelical structures with ARM-type repeats

Author(s): Sathyanarayana Bangalore | Hahn Yoonsoo | Patankar Manish | Pastan Ira | Lee Byungkook
Volume: 9
Issue: 1
Year: 2009
Conformational changes and loose packing promote E. coli Tryptophanase cold lability

Author(s): Kogan Anna | Gdalevsky Garik | Cohen-Luria Rivka | Goldgur Yehuda | Phillips Robert | Parola Abraham | Almog Orna
Volume: 9
Issue: 1
Year: 2009
QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information

Author(s): Benkert Pascal | Schwede Torsten | Tosatto Silvio
Volume: 9
Issue: 1
Year: 2009
Exploring protein structural dissimilarity to facilitate structure classification

Author(s): Jain Pooja | Hirst Jonathan
Volume: 9
Issue: 1
Year: 2009
A tool for calculating binding-site residues on proteins from PDB structures

Author(s): Hu Jing | Yan Changhui
Volume: 9
Issue: 1
Year: 2009
The Sam domain of the lipid phosphatase Ship2 adopts a common model to interact with Arap3-Sam and EphA2-Sam

Author(s): Leone Marilisa | Cellitti Jason | Pellecchia Maurizio
Volume: 9
Issue: 1
Year: 2009
Molecular models of human P-glycoprotein in two different catalytic states

Author(s): Becker Jean-Paul | Depret Grégoire | Van Bambeke Françoise | Tulkens Paul | Prévost Martine
Volume: 9
Issue: 1
Year: 2009
Database of ligand-induced domain movements in enzymes

Author(s): Qi Guoying | Hayward Steven
Volume: 9
Issue: 1
Year: 2009
An automatic method for assessing structural importance of amino acid positions

Author(s): Sadowski Michael | Jones David
Volume: 9
Issue: 1
Year: 2009
The structural and functional determinants of the Axin and Dishevelled DIX domains

Author(s): Ehebauer Matthias | Arias Alfonso
Volume: 9
Issue: 1
Year: 2009
Structural effects of clinically observed mutations in JAK2 exons 13-15: comparison with V617F and exon 12 mutations

Author(s): Lee Tai-Sung | Ma Wanlong | Zhang Xi | Kantarjian Hagop | Albitar Maher
Volume: 9
Issue: 1
Year: 2009
Rational mutagenesis to support structure-based drug design: MAPKAP kinase 2 as a case study

Author(s): Argiriadi Maria | Sousa Silvino | Banach David | Marcotte Douglas | Xiang Tao | Tomlinson Medha | Demers Megan | Harris Christopher | Kwak Silvia | Hardman Jennifer | Pietras Margaret | Quinn Lisa | DiMauro Jennifer | Ni Baofu | Mankovich John | Borhani David | Talanian Robert | Sadhukhan Ramkrishna
Volume: 9
Issue: 1
Year: 2009
Conservation of structure and activity in Plasmodium purine nucleoside phosphorylases

Author(s): Chaikuad Apirat | Brady R Leo
Volume: 9
Issue: 1
Year: 2009
Three dimensional shape comparison of flexible proteins using the local-diameter descriptor

Author(s): Fang Yi | Liu Yu-Shen | Ramani Karthik
Volume: 9
Issue: 1
Year: 2009
Mirrors in the PDB: left-handed α-turns guide design with D-amino acids

Author(s): Annavarapu Srinivas | Nanda Vikas
Volume: 9
Issue: 1
Year: 2009
The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes

Author(s): Chang Changsoo | Coggill Penny | Bateman Alex | Finn Robert | Cymborowski Marcin | Otwinowski Zbyszek | Minor Wladek | Volkart Lour | Joachimiak Andrzej
Volume: 9
Issue: 1
Year: 2009
Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

Author(s): Andrabi Munazah | Mizuguchi Kenji | Sarai Akinori | Ahmad Shandar
Volume: 9
Issue: 1
Year: 2009
Functional correlation of bacterial LuxS with their quaternary associations: interface analysis of the structure networks

Author(s): Bhattacharyya Moitrayee | Vishveshwara Saraswathi
Volume: 9
Issue: 1
Year: 2009
Implications of the structure of human uridine phosphorylase 1 on the development of novel inhibitors for improving the therapeutic window of fluoropyrimidine chemotherapy

Author(s): Roosild Tarmo | Castronovo Samantha | Fabbiani Michael | Pizzorno Giuseppe
Volume: 9
Issue: 1
Year: 2009
Molecular models for intrastrand DNA G-quadruplexes

Author(s): Fogolari Federico | Haridas Haritha | Corazza Alessandra | Viglino Paolo | Corà Davide | Caselle Michele | Esposito Gennaro | Xodo Luigi
Volume: 9
Issue: 1
Year: 2009
Exon 6 of human JAG1 encodes a conserved structural unit

Author(s): Pintar Alessandro | Guarnaccia Corrado | Dhir Somdutta | Pongor Sándor
Volume: 9
Issue: 1
Year: 2009
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins

Author(s): Ito Jun-ichi | Sonobe Yuki | Ikeda Kazuyoshi | Tomii Kentaro | Higo Junichi
Volume: 9
Issue: 1
Year: 2009
Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography

Author(s): Lakomek Kristina | Dickmanns Achim | Kettwig Matthias | Urlaub Henning | Ficner Ralf | Lübke Torben
Volume: 9
Issue: 1
Year: 2009
Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm

Author(s): Oyama Takuji | Oka Hayato | Mayanagi Kouta | Shirai Tsuyoshi | Matoba Kyoko | Fujikane Ryosuke | Ishino Yoshizumi | Morikawa Kosuke
Volume: 9
Issue: 1
Year: 2009
Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs

Author(s): Marathe Arvind | Karandur Deepti | Bansal Manju
Volume: 9
Issue: 1
Year: 2009
Partially-supervised protein subclass discovery with simultaneous annotation of functional residues

Author(s): Georgi Benjamin | Schultz Jörg | Schliep Alexander
Volume: 9
Issue: 1
Year: 2009
Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor

Author(s): Gao Beile | Sugiman-Marangos Seiji | Junop Murray | Gupta Radhey
Volume: 9
Issue: 1
Year: 2009
A computational approach identifies two regions of Hepatitis C Virus E1 protein as interacting domains involved in viral fusion process

Author(s): Bruni Roberto | Costantino Angela | Tritarelli Elena | Marcantonio Cinzia | Ciccozzi Massimo | Rapicetta Maria | El Sawaf Gamal | Giuliani Alessandro | Ciccaglione Anna
Volume: 9
Issue: 1
Year: 2009
Improved estimation of structure predictor quality

Author(s): DeRonne Kevin | Karypis George
Volume: 9
Issue: 1
Year: 2009
Analysing the origin of long-range interactions in proteins using lattice models

Author(s): Noivirt-Brik Orly | Unger Ron | Horovitz Amnon
Volume: 9
Issue: 1
Year: 2009
PTools: an opensource molecular docking library

Author(s): Saladin Adrien | Fiorucci Sébastien | Poulain Pierre | Prévost Chantal | Zacharias Martin
Volume: 9
Issue: 1
Year: 2009
Conformational flexibility and molecular interactions of an archaeal homologue of the Shwachman-Bodian-Diamond syndrome protein

Author(s): Ng C Leong | Waterman David | Koonin Eugene | Walters Alison | Chong James | Isupov Michail | Lebedev Andrey | Bunka David | Stockley Peter | Ortiz-Lombardía Miguel | Antson Alfred
Volume: 9
Issue: 1
Year: 2009
Prediction of calcium-binding sites by combining loop-modeling with machine learning

Author(s): Liu Tianyun | Altman Russ
Volume: 9
Issue: 1
Year: 2009
Low-resolution structural studies of human Stanniocalcin-1

Author(s): Trindade Daniel | Silva Júlio | Navarro Margareth | Torriani Iris | Kobarg Jörg
Volume: 9
Issue: 1
Year: 2009
TIM-Finder: A new method for identifying TIM-barrel proteins

Author(s): Si Jing-Na | Yan Ren-Xiang | Wang Chuan | Zhang Ziding | Su Xiao-Dong
Volume: 9
Issue: 1
Year: 2009
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks

Author(s): Walsh Ian | Baù Davide | Martin Alberto | Mooney Catherine | Vullo Alessandro | Pollastri Gianluca
Volume: 9
Issue: 1
Year: 2009
Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis

Author(s): Csaba Gergely | Birzele Fabian | Zimmer Ralf
Volume: 9
Issue: 1
Year: 2009
Identification of hemagglutinin structural domain and polymorphisms which may modulate swine H1N1 interactions with human receptor

Author(s): Veljkovic Veljko | Niman Henry | Glisic Sanja | Veljkovic Nevena | Perovic Vladimir | Muller Claude
Volume: 9
Issue: 1
Year: 2009
Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra

Author(s): Sorzano Carlos | Otero Abraham | Olmos Estefanía | Carazo José
Volume: 9
Issue: 1
Year: 2009
Characterization of conserved properties of hemagglutinin of H5N1 and human influenza viruses: possible consequences for therapy and infection control

Author(s): Veljkovic Veljko | Veljkovic Nevena | Muller Claude | Müller Sybille | Glisic Sanja | Perovic Vladimir | Köhler Heinz
Volume: 9
Issue: 1
Year: 2009
An in silico study of the molecular basis of B-RAF activation and conformational stability

Author(s): Fratev Filip | Jónsdóttir Svava
Volume: 9
Issue: 1
Year: 2009
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