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Proteome Science

ISSN: 1477--5956
Publisher: BioMed Central


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Identification of protein-RNA interaction sites using the information of spatial adjacent residues

Author(s): Chen Wei | Zhang Shao-Wu | Cheng Yong-Mei | Pan Quan
Volume: 9
Issue: Suppl 1
Year: 2011
ATPsite: sequence-based prediction of ATP-binding residues

Author(s): Chen Ke | Mizianty Marcin | Kurgan Lukasz
Volume: 9
Issue: Suppl 1
Year: 2011
Ontology integration to identify protein complex in protein interaction networks

Author(s): Xu Bo | Lin Hongfei | Yang Zhihao
Volume: 9
Issue: Suppl 1
Year: 2011
An effective hybrid of hill climbing and genetic algorithm for 2D triangular protein structure prediction

Author(s): Su Shih-Chieh | Lin Cheng-Jian | Ting Chuan-Kang
Volume: 9
Issue: Suppl 1
Year: 2011
Protein complex detection with semi-supervised learning in protein interaction networks

Author(s): Shi Lei | Lei Xiujuan | Zhang Aidong
Volume: 9
Issue: Suppl 1
Year: 2011
Prediction of 492 human protein kinase substrate specificities

Author(s): Safaei Javad | Maňuch Ján | Gupta Arvind | Stacho Ladislav | Pelech Steven
Volume: 9
Issue: Suppl 1
Year: 2011
SProt: sphere-based protein structure similarity algorithm

Author(s): Galgonek Jakub | Hoksza David | Skopal Tomáš
Volume: 9
Issue: Suppl 1
Year: 2011
A new method for alignment of LC-MALDI-TOF data

Author(s): Tang Zhiqun | Zhang Lihua | Cheema Amrita | Ressom Habtom
Volume: 9
Issue: Suppl 1
Year: 2011
Processing methods for signal suppression of FTMS data

Author(s): Ma Xuepo | Cui Jian | Zhang Jianqiu
Volume: 9
Issue: Suppl 1
Year: 2011
Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation

Author(s): Shi Jinhong | Wu Fang-Xiang
Volume: 9
Issue: Suppl 1
Year: 2011
Fast subcellular localization by cascaded fusion of signal-based and homology-based methods

Author(s): Mak Man-Wai | Wang Wei | Kung Sun-Yuan
Volume: 9
Issue: Suppl 1
Year: 2011
Applications of graph theory in protein structure identification

Author(s): Yan Yan | Zhang Shenggui | Wu Fang-Xiang
Volume: 9
Issue: Suppl 1
Year: 2011
Decomposing PPI networks for complex discovery

Author(s): Liu Guimei | Yong Chern Han | Chua Hon Nian | Wong Limsoon
Volume: 9
Issue: Suppl 1
Year: 2011
Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric properties

Author(s): Wang Chien-Chih | Chen Chien-Yu
Volume: 9
Issue: Suppl 1
Year: 2011
Prediction of DNA-binding protein based on statistical and geometric features and support vector machines

Author(s): Zhou Weiqiang | Yan Hong
Volume: 9
Issue: Suppl 1
Year: 2011
Sequence and structural features of binding site residues in protein-protein complexes: comparison with protein-nucleic acid complexes

Author(s): Gromiha M | Saranya N | Selvaraj S | Jayaram B | Fukui Kazuhiko
Volume: 9
Issue: Suppl 1
Year: 2011
Bayesian non-negative factor analysis for reconstructing transcription factor mediated regulatory networks

Author(s): Meng Jia | Zhang Jianqiu (Michelle) | Chen Yidong | Huang Yufei
Volume: 9
Issue: Suppl 1
Year: 2011
A binary matrix factorization algorithm for protein complex prediction

Author(s): Tu Shikui | Chen Runsheng | Xu Lei
Volume: 9
Issue: Suppl 1
Year: 2011
NWE: Node-weighted expansion for protein complex prediction using random walk distances

Author(s): Maruyama Osamu | Chihara Ayaka
Volume: 9
Issue: Suppl 1
Year: 2011
Impact of clostridial glucosylating toxins on the proteome of colonic cells determined by isotope-coded protein labeling and LC-MALDI

Author(s): Jochim Nelli | Gerhard Ralf | Just Ingo | Pich Andreas
Volume: 9
Issue: 1
Year: 2011
Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands

Author(s): Donadio Elena | Giusti Laura | Cetani Filomena | Da Valle Ylenia | Ciregia Federica | Giannaccini Gino | Pardi Elena | Saponaro Federica | Torregrossa Liborio | Basolo Fulvio | Marcocci Claudio | Lucacchini Antonio
Volume: 9
Issue: 1
Year: 2011
Differential proteome analysis of human embryonic kidney cell line (HEK-293) following mycophenolic acid treatment

Author(s): Qasim Muhammad | Rahman Hazir | Oellerich Michael | Asif Abdul
Volume: 9
Issue: 1
Year: 2011
A proteomic analysis of Curcuma comosa Roxb. rhizomes

Author(s): Boonmee Apaporn | Srisomsap Chantragan | Chokchaichamnankit Daranee | Karnchanatat Aphichart | Sangvanich Polkit
Volume: 9
Issue: 1
Year: 2011
Proteomic analysis of pregnancy-related proteins from pig uterus endometrium during pregnancy

Author(s): Chae Jung-Il | Kim Jumi | Lee Seong | Jeon Young-Joo | Kim Dong-Wook | Soh Yunjo | Seo Kang | Lee Hak | Choi Nag-Jin | Ryu Joohyun | Kang Sunghyun | Cho Seong-Keun | Lee Dong-Seok | Chung Hyung | Koo and
Volume: 9
Issue: 1
Year: 2011
Evaluation of three high abundance protein depletion kits for umbilical cord serum proteomics

Author(s): Liu Bin | Qiu Fang-hua | Voss Courtney | Xu Yun | Zhao Ming-zhe | Wu Yan-xin | Nie Jing | Wang Zi-lian
Volume: 9
Issue: 1
Year: 2011
A proteomic analysis of C-reactive protein stimulated THP-1 monocytes

Author(s): Eisenhardt Steffen | Habersberger Jonathon | Oliva Karen | Lancaster Graeme | Ayhan Mustafa | Woollard Kevin | Bannasch Holger | Rice Greg | Peter Karlheinz
Volume: 9
Issue: 1
Year: 2011
Immunoproteomic analysis of bacterial proteins of Actinobacillus pleuropneumoniae serotype 1

Author(s): Zhang Wei | Shao Jing | Liu Guangjin | Tang Fang | Lu Yan | Zhai Zhipeng | Wang Yang | Wu Zongfu | Yao Huochun | Lu Chengping
Volume: 9
Issue: 1
Year: 2011
2D DIGE analysis of maternal plasma for potential biomarkers of Down Syndrome

Author(s): Heywood Wendy | Madgett Tracey | Wang Darrell | Wallington Amanda | Hogg Julie | Mills Kevin | Avent Neil
Volume: 9
Issue: 1
Year: 2011
Differential chromatin proteomics of the MMS-induced DNA damage response in yeast

Author(s): Kim Dong | Gidvani Rohan | Ingalls Brian | Duncker Bernard | McConkey Brendan
Volume: 9
Issue: 1
Year: 2011
Characterization of proteome alterations in Phanerochaete chrysosporium in response to lead exposure

Author(s): Yıldırım Volkan | Özcan Servet | Becher Dörte | Büttner Knut | Hecker Michael | Özcengiz Gülay
Volume: 9
Issue: 1
Year: 2011
Comparative Proteomic Analysis of saccharopolyspora spinosa SP06081 and PR2 strains reveals the differentially expressed proteins correlated with the increase of spinosad yield

Author(s): Luo Yushuang | Ding Xuezhi | Xia Liqiu | Huang Fan | Li Wenping | Huang Shaoya | Tang Ying | Sun Yunjun
Volume: 9
Issue: 1
Year: 2011
Urinary protein profiling in hyperactive delirium and non-delirium cardiac surgery ICU patients

Author(s): van den Boogaard Mark | van Swelm Rachel | Russel Frans | Heemskerk Suzanne | van der Hoeven Johannes | Masereeuw Rosalinde | Pickkers Peter
Volume: 9
Issue: 1
Year: 2011
Clinical and Technical Phosphoproteomic Research

Author(s): López Elena | López Isabel | Ferreira Antonio | Sequí Julia
Volume: 9
Issue: 1
Year: 2011
Identification of stromal proteins overexpressed in nodular sclerosis Hodgkin lymphoma

Author(s): Kischel Philippe | Waltregny David | Greffe Yannick | Mazzucchelli Gabriel | De Pauw Edwin | de Leval Laurence | Castronovo Vincent
Volume: 9
Issue: 1
Year: 2011
Identification of Apo-A1 as a biomarker for early diagnosis of bladder transitional cell carcinoma

Author(s): Li Hongjie | Li Changying | Wu Huili | Zhang Ting | Wang Jin | Wang Shixin | Chang Jiwu
Volume: 9
Issue: 1
Year: 2011
Analysis of the biofilm proteome of Xylella fastidiosa

Author(s): Silva Mariana | De Souza Alessandra | Takita Marco | Labate Carlos | Machado Marcos
Volume: 9
Issue: 1
Year: 2011
Discrimination of grade 2 and 3 cervical intraepithelial neoplasia by means of analysis of water soluble proteins recovered from cervical biopsies

Author(s): Uleberg Kai-Erik | Munk Ane | Brede Cato | Gudlaugsson Einar | van Diermen Bianca | Skaland Ivar | Malpica Anais | Janssen Emiel | Hjelle Anne | Baak Jan
Volume: 9
Issue: 1
Year: 2011
In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos

Author(s): Mann Karlheinz | Mann Matthias
Volume: 9
Issue: 1
Year: 2011
Multi-Segment Direct Inject nano-ESI-LTQ-FT-ICR-MS/MS For Protein Identification

Author(s): Chen Jing | Canales Lorena | Neal Rachel
Volume: 9
Issue: 1
Year: 2011
Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose

Author(s): Sivagnanam Kumaran | Raghavan Vijaya | Shah Manesh | Hettich Robert | Verberkmoes Nathan | Lefsrud Mark
Volume: 9
Issue: 1
Year: 2011
A label-free quantitative shotgun proteomics analysis of rice grain development

Author(s): Lee Joohyun | Koh Hee-Jong
Volume: 9
Issue: 1
Year: 2011
Analysis of protein composition of rabbit aqueous humor following two different cataract surgery incision procedures using 2-DE and LC-MS/MS

Author(s): Stastna Miroslava | Behrens Ashley | McDonnell Peter | Van Eyk Jennifer
Volume: 9
Issue: 1
Year: 2011
Phosphoproteins regulated by heat stress in rice leaves

Author(s): Chen Xinhai | Zhang Wenfeng | Zhang Baoqian | Zhou Jiechao | Wang Yongfei | Yang Qiaobin | Ke Yuqin | He Huaqin
Volume: 9
Issue: 1
Year: 2011
An automated growth enclosure for metabolic labeling of Arabidopsis thaliana with 13C-carbon dioxide - an in vivo labeling system for proteomics and metabolomics research

Author(s): Chen Wen-Ping | Yang Xiao-Yuan | Harms Geoffrey | Gray William | Hegeman Adrian | Cohen Jerry
Volume: 9
Issue: 1
Year: 2011
Targeted quantitative mass spectrometric immunoassay for human protein variants

Author(s): Trenchevska Olgica | Nedelkov Dobrin
Volume: 9
Issue: 1
Year: 2011
Analysis of the proteome of human airway epithelial secretions

Author(s): Ali Mehboob | Lillehoj Erik | Park Yongsung | Kyo Yoshiyuki | Kim K
Volume: 9
Issue: 1
Year: 2011
Comparative proteomics analysis of proteins expressed in the I-1 and I-2 internodes of strawberry stolons

Author(s): Fang Xianping | Ma Huasheng | Lu Dezhao | Yu Hong | Lai Wenguo | Ruan Songlin
Volume: 9
Issue: 1
Year: 2011
Differential analysis of glioblastoma multiforme proteome by a 2D-DIGE approach

Author(s): Collet Brigitte | Guitton Nathalie | Saïkali Stephan | Avril Tony | Pineau Charles | Hamlat Abderrahmane | Mosser Jean | Quillien Véronique
Volume: 9
Issue: 1
Year: 2011
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