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PLoS Genetics

ISSN: 1553--7390
Publisher: Public Library of Science (PLoS)


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RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis.

Author(s): Chan | Henderson | Zhang | Shah | Chien | Jacobsen
Volume: 2
Issue: 6
Year: 2006
Why Do Hubs Tend to Be Essential in Protein Networks?

Author(s): He | Zhang
Volume: 2
Issue: 6
Year: 2006
A Perikinetochoric Ring Defined by MCAK and Aurora-B as a Novel Centromere Domain.

Author(s): Parra | Gómez | Viera | Page | Calvente | Wordeman | Rufas | Suja
Volume: 2
Issue: 6
Year: 2006
Changes in gene expression foreshadow diet-induced obesity in genetically identical mice.

Author(s): Koza Robert A | Nikonova Larissa | Hogan Jessica | Rim Jong-Seop | Mendoza Tamra | Faulk Christopher | Skaf Jihad | Kozak Leslie P
Volume: 2
Issue: 5
Year: 2006
Risk alleles of USF1 gene predict cardiovascular disease of women in two prospective studies.

Author(s): Komulainen Kati | Alanne Mervi | Auro Kirsi | Kilpikari Riika | Pajukanta Päivi | Saarela Janna | Ellonen Pekka | Salminen Kaisa | Kulathinal Sangita | Kuulasmaa Kari | Silander Kaisa | Salomaa Veikko | Perola Markus | Peltonen Leena
Volume: 2
Issue: 5
Year: 2006
The leukocyte receptor complex in chicken is characterized by massive expansion and diversification of immunoglobulin-like Loci.

Author(s): Laun Katja | Coggill Penny | Palmer Sophie | Sims Sarah | Ning Zemin | Ragoussis Jiannis | Volpi Emanuela | Wilson Natalie | Beck Stephan | Ziegler Andreas | Volz Armin
Volume: 2
Issue: 5
Year: 2006
Genome-wide mapping of susceptibility to coronary artery disease identifies a novel replicated locus on chromosome 17.

Author(s): Farrall Martin | Green Fiona R | Peden John F | Olsson Per G | Clarke Robert | Hellenius Mai-Lis | Rust Stephan | Lagercrantz Jacob | Franzosi Maria Grazia | Schulte Helmut | Carey Alisoun | Olsson Gunnar | Assmann Gerd | Tognoni Gianni | Collins Rory | Hamsten Anders | Watkins Hugh
Volume: 2
Issue: 5
Year: 2006
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens.

Author(s): Ogata Hiroyuki | La Scola Bernard | Audic Stéphane | Renesto Patricia | Blanc Guillaume | Robert Catherine | Fournier Pierre-Edouard | Claverie Jean-Michel | Raoult Didier
Volume: 2
Issue: 5
Year: 2006
Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans.

Author(s): Cui Mingxue | Kim E Bridget | Han Min
Volume: 2
Issue: 5
Year: 2006
The Polycomb group protein EED is dispensable for the initiation of random X-chromosome inactivation.

Author(s): Kalantry Sundeep | Magnuson Terry
Volume: 2
Issue: 5
Year: 2006
Coverage and characteristics of the Affymetrix GeneChip Human Mapping 100K SNP set.

Author(s): Nicolae Dan L | Wen Xiaoquan | Voight Benjamin F | Cox Nancy J
Volume: 2
Issue: 5
Year: 2006
High-resolution recombination patterns in a region of human chromosome 21 measured by sperm typing.

Author(s): Tiemann-Boege Irene | Calabrese Peter | Cochran David M | Sokol Rebecca | Arnheim Norman
Volume: 2
Issue: 5
Year: 2006
Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila.

Author(s): Arguello J Roman | Chen Ying | Yang Shuang | Wang Wen | Long Manyuan
Volume: 2
Issue: 5
Year: 2006
Discordance of species trees with their most likely gene trees.

Author(s): Degnan James H | Rosenberg Noah A
Volume: 2
Issue: 5
Year: 2006
Epigenetic telomere protection by Drosophila DNA damage response pathways.

Author(s): Oikemus Sarah R | Queiroz-Machado Joana | Lai KuanJu | McGinnis Nadine | Sunkel Claudio | Brodsky Michael H
Volume: 2
Issue: 5
Year: 2006
A simple physical model predicts small exon length variations.

Author(s): Chern Tzu-Ming | van Nimwegen Erik | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Zavolan Mihaela
Volume: 2
Issue: 4
Year: 2006
Loss of Atrx affects trophoblast development and the pattern of X-inactivation in extraembryonic tissues.

Author(s): Garrick David | Sharpe Jackie A | Arkell Ruth | Dobbie Lorraine | Smith Andrew J H | Wood William G | Higgs Douglas R | Gibbons Richard J
Volume: 2
Issue: 4
Year: 2006
Distinguishing protein-coding from non-coding RNAs through support vector machines.

Author(s): Liu Jinfeng | Gough Julian | Rost Burkhard
Volume: 2
Issue: 4
Year: 2006
A method for similarity search of genomic positional expression using CAGE.

Author(s): Seno Shigeto | Takenaka Yoichi | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Matsuda Hideo
Volume: 2
Issue: 4
Year: 2006
Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units.

Author(s): Davis Melissa J | Hanson Kelly A | Clark Francis | Fink J Lynn | Zhang Fasheng | Kasukawa Takeya | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Teasdale Rohan D
Volume: 2
Issue: 4
Year: 2006
Global patterns in human mitochondrial DNA and Y-chromosome variation caused by spatial instability of the local cultural processes.

Author(s): Kumar Vikrant | Langstieh Banrida T | Madhavi Komal V | Naidu Vegi M | Singh Hardeep Pal | Biswas Silpak | Thangaraj Kumarasamy | Singh Lalji | Reddy B Mohan
Volume: 2
Issue: 4
Year: 2006
Genome Network and FANTOM3: assessing the complexity of the transcriptome.

Author(s): Hayashizaki Yoshihide | Carninci Piero
Volume: 2
Issue: 4
Year: 2006
Pseudo-messenger RNA: phantoms of the transcriptome.

Author(s): Frith Martin C | Wilming Laurens G | Forrest Alistair | Kawaji Hideya | Tan Sin Lam | Wahlestedt Claes | Bajic Vladimir B | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Bailey Timothy L | Huminiecki Lukasz
Volume: 2
Issue: 4
Year: 2006
Clusters of internally primed transcripts reveal novel long noncoding RNAs.

Author(s): Furuno Masaaki | Pang Ken C | Ninomiya Noriko | Fukuda Shiro | Frith Martin C | Bult Carol | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Mattick John S | Suzuki Harukazu
Volume: 2
Issue: 4
Year: 2006
Virtual histology of transgenic mouse embryos for high-throughput phenotyping.

Author(s): Johnson John T | Hansen Mark S | Wu Isabel | Healy Lindsey J | Johnson Christopher R | Jones Greg M | Capecchi Mario R | Keller Charles
Volume: 2
Issue: 4
Year: 2006
On the mechanism of gene amplification induced under stress in Escherichia coli.

Author(s): Slack Andrew | Thornton P C | Magner Daniel B | Rosenberg Susan M | Hastings P J
Volume: 2
Issue: 4
Year: 2006
Mice and men: their promoter properties.

Author(s): Bajic Vladimir B | Tan Sin Lam | Christoffels Alan | Schönbach Christian | Lipovich Leonard | Yang Liang | Hofmann Oliver | Kruger Adele | Hide Winston | Kai Chikatoshi | Kawai Jun | Hume David A | Carninci Piero | Hayashizaki Yoshihide
Volume: 2
Issue: 4
Year: 2006
Chemical genetics reveals an RGS/G-protein role in the action of a compound.

Author(s): Fitzgerald Kevin | Tertyshnikova Svetlana | Moore Lisa | Bjerke Lynn | Burley Ben | Cao Jian | Carroll Pamela | Choy Robert | Doberstein Steve | Dubaquie Yves | Franke Yvonne | Kopczynski Jenny | Korswagen Hendrik | Krystek Stanley R | Lodge Nicholas J | Plasterk Ronald | Starrett John | Stouch Terry | Thalody George | Wayne Honey | van der Linden Alexander | Zhang Yongmei | Walker Stephen G | Cockett Mark | Wardwell-Swanson Judi | Ross-Macdonald Petra | Kindt Rachel M
Volume: 2
Issue: 4
Year: 2006
DNA methylation supports intrinsic epigenetic memory in mammalian cells.

Author(s): Feng Yong-Qing | Desprat Romain | Fu Haiqing | Olivier Emmanuel | Lin Chii Mei | Lobell Amanda | Gowda Shilpa N | Aladjem Mirit I | Bouhassira Eric E
Volume: 2
Issue: 4
Year: 2006
SPA: a probabilistic algorithm for spliced alignment.

Author(s): van Nimwegen Erik | Paul Nicodeme | Sheridan Robert | Zavolan Mihaela
Volume: 2
Issue: 4
Year: 2006
Balancing selection and its effects on sequences in nearby genome regions.

Author(s): Charlesworth Deborah
Volume: 2
Issue: 4
Year: 2006
Heterotachy in mammalian promoter evolution.

Author(s): Taylor Martin S | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Semple Colin A M
Volume: 2
Issue: 4
Year: 2006
Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis.

Author(s): Scacheri Peter C | Davis Sean | Odom Duncan T | Crawford Gregory E | Perkins Stacie | Halawi Mohamad J | Agarwal Sunita K | Marx Stephen J | Spiegel Allen M | Meltzer Paul S | Collins Francis S
Volume: 2
Issue: 4
Year: 2006
Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis.

Author(s): Chain Frédéric J J | Evans Ben J
Volume: 2
Issue: 4
Year: 2006
The abundance of short proteins in the mammalian proteome.

Author(s): Frith Martin C | Forrest Alistair R | Nourbakhsh Ehsan | Pang Ken C | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Bailey Timothy L | Grimmond Sean M
Volume: 2
Issue: 4
Year: 2006
Complex Loci in human and mouse genomes.

Author(s): Engström Pär G | Suzuki Harukazu | Ninomiya Noriko | Akalin Altuna | Sessa Luca | Lavorgna Giovanni | Brozzi Alessandro | Luzi Lucilla | Tan Sin Lam | Yang Liang | Kunarso Galih | Ng Edwin Lian-Chong | Batalov Serge | Wahlestedt Claes | Kai Chikatoshi | Kawai Jun | Carninci Piero | Hayashizaki Yoshihide | Wells Christine | Bajic Vladimir B | Orlando Valerio | Reid James F | Lenhard Boris | Lipovich Leonard
Volume: 2
Issue: 4
Year: 2006
Dynamic reprogramming of DNA methylation at an epigenetically sensitive allele in mice.

Author(s): Blewitt Marnie E | Vickaryous Nicola K | Paldi Andras | Koseki Haruhiko | Whitelaw Emma
Volume: 2
Issue: 4
Year: 2006
Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA.

Author(s): Chan Yvonne L | Anderson Christian N K | Hadly Elizabeth A
Volume: 2
Issue: 4
Year: 2006
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.

Author(s): Maeda Norihiro | Kasukawa Takeya | Oyama Rieko | Gough Julian | Frith Martin | Engström Pär G | Lenhard Boris | Aturaliya Rajith N | Batalov Serge | Beisel Kirk W | Bult Carol J | Fletcher Colin F | Forrest Alistair R R | Furuno Masaaki | Hill David | Itoh Masayoshi | Kanamori-Katayama Mutsumi | Katayama Shintaro | Katoh Masaru | Kawashima Tsugumi | Quackenbush John | Ravasi Timothy | Ring Brian Z | Shibata Kazuhiro | Sugiura Koji | Takenaka Yoichi | Teasdale Rohan D | Wells Christine A | Zhu Yunxia | Kai Chikatoshi | Kawai Jun | Hume David A | Carninci Piero | Hayashizaki Yoshihide
Volume: 2
Issue: 4
Year: 2006
Inhibition of SIRT1 reactivates silenced cancer genes without loss of promoter DNA hypermethylation.

Author(s): Pruitt Kevin | Zinn Rebekah L | Ohm Joyce E | McGarvey Kelly M | Kang Sung-Hae L | Watkins D Neil | Herman James G | Baylin Stephen B
Volume: 2
Issue: 3
Year: 2006
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes.

Author(s): Bentley Stephen D | Aanensen David M | Mavroidi Angeliki | Saunders David | Rabbinowitsch Ester | Collins Matthew | Donohoe Kathy | Harris David | Murphy Lee | Quail Michael A | Samuel Gabby | Skovsted Ian C | Kaltoft Margit Staum | Barrell Bart | Reeves Peter R | Parkhill Julian | Spratt Brian G
Volume: 2
Issue: 3
Year: 2006
Increased life span due to calorie restriction in respiratory-deficient yeast.

Author(s): Lin Su-Ju | Guarente Leonard
Volume: 2
Issue: 3
Year: 2006
PRKCA and multiple sclerosis: association in two independent populations.

Author(s): Saarela Janna | Kallio Suvi P | Chen Daniel | Montpetit Alexandre | Jokiaho Anne | Choi Eva | Asselta Rosanna | Bronnikov Denis | Lincoln Matthew R | Sadovnick A Dessa | Tienari Pentti J | Koivisto Keijo | Palotie Aarno | Ebers George C | Hudson Thomas J | Peltonen Leena
Volume: 2
Issue: 3
Year: 2006
Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon.

Author(s): Rangwala Sanjida H | Elumalai Rangasamy | Vanier Cheryl | Ozkan Hakan | Galbraith David W | Richards Eric J
Volume: 2
Issue: 3
Year: 2006
Assumption-free estimation of heritability from genome-wide identity-by-descent sharing between full siblings.

Author(s): Visscher Peter M | Medland Sarah E | Ferreira Manuel A R | Morley Katherine I | Zhu Gu | Cornes Belinda K | Montgomery Grant W | Martin Nicholas G
Volume: 2
Issue: 3
Year: 2006
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages.

Author(s): Fischer Gilles | Rocha Eduardo P C | Brunet Frédéric | Vergassola Massimo | Dujon Bernard
Volume: 2
Issue: 3
Year: 2006
The dictyostelium kinome--analysis of the protein kinases from a simple model organism.

Author(s): Goldberg Jonathan M | Manning Gerard | Liu Allen | Fey Petra | Pilcher Karen E | Xu Yanji | Smith Janet L
Volume: 2
Issue: 3
Year: 2006
Control of daily transcript oscillations in Drosophila by light and the circadian clock.

Author(s): Wijnen Herman | Naef Felix | Boothroyd Catharine | Claridge-Chang Adam | Young Michael W
Volume: 2
Issue: 3
Year: 2006
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