Weighted next reaction method and parameter selection for efficient simulation of rare events in biochemical reaction systems
Author(s): Xu Zhouyi | Cai Xiaodong
Volume: 2011
Issue: 1
Year: 2011
Author(s): Xu Zhouyi | Cai Xiaodong Volume: 2011 Issue: 1 Year: 2011
Modeling of Neuronal Growth In Vitro: Comparison of Simulation Tools NETMORPH and CX3D
Author(s): Aćimović J | Mäki-Marttunen T | Havela R | Teppola H | Linne M-L
Volume: 2011
Issue: 1
Year: 2011
Author(s): Aćimović J | Mäki-Marttunen T | Havela R | Teppola H | Linne M-L Volume: 2011 Issue: 1 Year: 2011
A systems biology approach to analyse leaf carbohydrate metabolism in Arabidopsis thaliana
Author(s): Henkel Sebastian | Nägele Thomas | Hörmiller Imke | Sauter Thomas | Sawodny Oliver | Ederer Michael | Heyer Arnd
Volume: 2011
Issue: 1
Year: 2011
Author(s): Henkel Sebastian | Nägele Thomas | Hörmiller Imke | Sauter Thomas | Sawodny Oliver | Ederer Michael | Heyer Arnd Volume: 2011 Issue: 1 Year: 2011
Modeling time delay in the NFκB signaling pathway following low dose IL-1 stimulation
Author(s): Witt Johannes | Barisic Sandra | Sawodny Oliver | Ederer Michael | Kulms Dagmar | Sauter Thomas
Volume: 2011
Issue: 1
Year: 2011
Author(s): Witt Johannes | Barisic Sandra | Sawodny Oliver | Ederer Michael | Kulms Dagmar | Sauter Thomas Volume: 2011 Issue: 1 Year: 2011
Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models
Author(s): Manninen Tiina | Hituri Katri | Toivari Eeva | Linne Marja-Leena
Volume: 2011
Issue: 1
Year: 2011
Author(s): Manninen Tiina | Hituri Katri | Toivari Eeva | Linne Marja-Leena Volume: 2011 Issue: 1 Year: 2011
Unscented Kalman filter with parameter identifiability analysis for the estimation of multiple parameters in kinetic models
Author(s): Baker Syed | Poskar C | Junker Björn
Volume: 2011
Issue: 1
Year: 2011
Author(s): Baker Syed | Poskar C | Junker Björn Volume: 2011 Issue: 1 Year: 2011
Measuring and analyzing tissue specificity of human genes and protein complexes
Author(s): Emig Dorothea | Kacprowski Tim | Albrecht Mario
Volume: 2011
Issue: 1
Year: 2011
Author(s): Emig Dorothea | Kacprowski Tim | Albrecht Mario Volume: 2011 Issue: 1 Year: 2011
Inference of Kinetic Parameters of Delayed Stochastic Models of Gene Expression Using a Markov Chain Approximation
Author(s): Mannerstrom Henrik | Yli-Harja Olli | Ribeiro Andre
Volume: 2011
Issue: 1
Year: 2011
Author(s): Mannerstrom Henrik | Yli-Harja Olli | Ribeiro Andre Volume: 2011 Issue: 1 Year: 2011
Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks
Author(s): Dimitrova Elena | Mitra Indranil | Jarrah Abdul
Volume: 2011
Issue: 1
Year: 2011
Author(s): Dimitrova Elena | Mitra Indranil | Jarrah Abdul Volume: 2011 Issue: 1 Year: 2011
Modeling of Neuronal Growth In Vitro: Comparison of Simulation Tools NETMORPH and CX3D
Author(s): J. Aćimović | T. Mäki-Marttunen | R. Havela | H. Teppola | M.-L. Linne
Volume: 2011
Year: 2011
Author(s): J. Aćimović | T. Mäki-Marttunen | R. Havela | H. Teppola | M.-L. Linne Volume: 2011 Year: 2011
Inference of Kinetic Parameters of Delayed Stochastic Models of Gene Expression Using a Markov Chain Approximation
Author(s): Henrik Mannerstrom | Olli Yli-Harja | Andre S. Ribeiro
Volume: 2011
Year: 2011
Author(s): Henrik Mannerstrom | Olli Yli-Harja | Andre S. Ribeiro Volume: 2011 Year: 2011
Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models
Author(s): Tiina Manninen | Katri Hituri | Eeva Toivari | Marja-Leena Linne
Volume: 2011
Year: 2011
Author(s): Tiina Manninen | Katri Hituri | Eeva Toivari | Marja-Leena Linne Volume: 2011 Year: 2011
A Bayesian Analysis for Identifying DNA Copy Number Variations Using a Compound Poisson Process
Author(s): Chen Jie | Yiğiter Ayten | Wang Yu-Ping | Deng Hong-Wen
Volume: 2010
Issue: 1
Year: 2010
Author(s): Chen Jie | Yiğiter Ayten | Wang Yu-Ping | Deng Hong-Wen Volume: 2010 Issue: 1 Year: 2010
TRII: A Probabilistic Scoring of Drosophila melanogaster Translation Initiation Sites
Author(s): Weir Michael P | Rice Michael D
Volume: 2010
Issue: 1
Year: 2010
Author(s): Weir Michael P | Rice Michael D Volume: 2010 Issue: 1 Year: 2010
A Hypothesis Test for Equality of Bayesian Network Models
Author(s): Almudevar Anthony
Volume: 2010
Issue: 1
Year: 2010
Author(s): Almudevar Anthony Volume: 2010 Issue: 1 Year: 2010
A New-Fangled FES-k-Means Clustering Algorithm for Disease Discovery and Visual Analytics
Author(s): Oyana Tonny J
Volume: 2010
Issue: 1
Year: 2010
Author(s): Oyana Tonny J Volume: 2010 Issue: 1 Year: 2010
Polynomial-Time Algorithm for Controllability Test of a Class of Boolean Biological Networks
Author(s): Kobayashi Koichi | Imura Jun-Ichi | Hiraishi Kunihiko
Volume: 2010
Issue: 1
Year: 2010
Author(s): Kobayashi Koichi | Imura Jun-Ichi | Hiraishi Kunihiko Volume: 2010 Issue: 1 Year: 2010
Progression Analysis and Stage Discovery in Continuous Physiological Processes Using Image Computing
Author(s): Shamir Lior | Rahimi Salim | Orlov Nikita | Ferrucci Luigi | Goldberg Ilya
Volume: 2010
Issue: 1
Year: 2010
Author(s): Shamir Lior | Rahimi Salim | Orlov Nikita | Ferrucci Luigi | Goldberg Ilya Volume: 2010 Issue: 1 Year: 2010
A Bayesian Analysis for Identifying DNA Copy Number Variations Using a Compound Poisson Process
Author(s): Jie Chen | Ayten Yiğiter | Yu-Ping Wang | Hong-Wen Deng
Volume: 2010
Year: 2010
Author(s): Jie Chen | Ayten Yiğiter | Yu-Ping Wang | Hong-Wen Deng Volume: 2010 Year: 2010
TRII: A Probabilistic Scoring of Drosophila melanogaster Translation Initiation Sites
Author(s): Michael P. Weir | Michael D. Rice
Volume: 2010
Year: 2010
Author(s): Michael P. Weir | Michael D. Rice Volume: 2010 Year: 2010
Polynomial-Time Algorithm for Controllability Test of a Class of Boolean Biological Networks
Author(s): Koichi Kobayashi | Jun-Ichi Imura | Kunihiko Hiraishi
Volume: 2010
Year: 2010
Author(s): Koichi Kobayashi | Jun-Ichi Imura | Kunihiko Hiraishi Volume: 2010 Year: 2010
A Hypothesis Test for Equality of Bayesian Network Models
Author(s): Anthony Almudevar
Volume: 2010
Year: 2010
Author(s): Anthony Almudevar Volume: 2010 Year: 2010
A New-Fangled FES-k-Means Clustering Algorithm for Disease Discovery and Visual Analytics
Author(s): Tonny J. Oyana
Volume: 2010
Year: 2010
Author(s): Tonny J. Oyana Volume: 2010 Year: 2010
Progression Analysis and Stage Discovery in Continuous Physiological Processes Using Image Computing
Author(s): Lior Shamir | Salim Rahimi | Nikita Orlov | Luigi Ferrucci | Ilya G. Goldberg
Volume: 2010
Year: 2010
Author(s): Lior Shamir | Salim Rahimi | Nikita Orlov | Luigi Ferrucci | Ilya G. Goldberg Volume: 2010 Year: 2010
Impact of Missing Value Imputation on Classification for DNA Microarray Gene Expression Data—A Model-Based Study
Author(s): Sun Youting | Braga-Neto Ulisses | Dougherty EdwardR
Volume: 2009
Issue: 1
Year: 2009
Author(s): Sun Youting | Braga-Neto Ulisses | Dougherty EdwardR Volume: 2009 Issue: 1 Year: 2009
Compressive Sensing DNA Microarrays
Author(s): Dai Wei | Sheikh Mona A | Milenkovic Olgica | Baraniuk Richard G
Volume: 2009
Issue: 1
Year: 2009
Author(s): Dai Wei | Sheikh Mona A | Milenkovic Olgica | Baraniuk Richard G Volume: 2009 Issue: 1 Year: 2009
Applications of Signal Processing Techniques to Bioinformatics, Genomics, and Proteomics
Author(s): Serpedin Erchin | Garcia-Frias Javier | Huang Yufei | Braga-Neto Ulisses
Volume: 2009
Issue: 1
Year: 2009
Author(s): Serpedin Erchin | Garcia-Frias Javier | Huang Yufei | Braga-Neto Ulisses Volume: 2009 Issue: 1 Year: 2009
A Bayesian Network View on Nested Effects Models
Author(s): Zeller Cordula | Fröhlich Holger | Tresch Achim
Volume: 2009
Issue: 1
Year: 2009
Author(s): Zeller Cordula | Fröhlich Holger | Tresch Achim Volume: 2009 Issue: 1 Year: 2009
Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints
Author(s): Yoon Byung-Jun
Volume: 2009
Issue: 1
Year: 2009
Author(s): Yoon Byung-Jun Volume: 2009 Issue: 1 Year: 2009
Assessing the Exceptionality of Coloured Motifs in Networks
Author(s): Schbath Sophie | Lacroix Vincent | Sagot Marie-France
Volume: 2009
Issue: 1
Year: 2009
Author(s): Schbath Sophie | Lacroix Vincent | Sagot Marie-France Volume: 2009 Issue: 1 Year: 2009
Using a State-Space Model and Location Analysis to Infer Time-Delayed Regulatory Networks
Author(s): Koh Chushin | Wu Fang-Xiang | Selvaraj Gopalan | Kusalik Anthony
Volume: 2009
Issue: 1
Year: 2009
Author(s): Koh Chushin | Wu Fang-Xiang | Selvaraj Gopalan | Kusalik Anthony Volume: 2009 Issue: 1 Year: 2009
Functional Classification of Genome-Scale Metabolic Networks
Author(s): Ebenhöh Oliver | Handorf Thomas
Volume: 2009
Issue: 1
Year: 2009
Author(s): Ebenhöh Oliver | Handorf Thomas Volume: 2009 Issue: 1 Year: 2009
Network Structure and Biological Function: Reconstruction, Modeling, and Statistical Approaches
Author(s): Selbig Joachim | Steinfath Matthias | Repsilber Dirk
Volume: 2009
Issue: 1
Year: 2009
Author(s): Selbig Joachim | Steinfath Matthias | Repsilber Dirk Volume: 2009 Issue: 1 Year: 2009
Spectral Preprocessing for Clustering Time-Series Gene Expressions
Author(s): Zhao Wentao | Serpedin Erchin | Dougherty Edward R
Volume: 2009
Issue: 1
Year: 2009
Author(s): Zhao Wentao | Serpedin Erchin | Dougherty Edward R Volume: 2009 Issue: 1 Year: 2009
Stochastic Simulation of Delay-Induced Circadian Rhythms in Drosophila
Author(s): Xu Zhouyi | Cai Xiaodong
Volume: 2009
Issue: 1
Year: 2009
Author(s): Xu Zhouyi | Cai Xiaodong Volume: 2009 Issue: 1 Year: 2009
Origins of Stochasticity and Burstiness in High-Dimensional Biochemical Networks
Author(s): Rosenfeld Simon
Volume: 2009
Issue: 1
Year: 2009
Author(s): Rosenfeld Simon Volume: 2009 Issue: 1 Year: 2009
A Hybrid Technique for the Periodicity Characterization of Genomic Sequence Data
Author(s): Epps Julien
Volume: 2009
Issue: 1
Year: 2009
Author(s): Epps Julien Volume: 2009 Issue: 1 Year: 2009
Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited
Author(s): Faryabi Babak | Vahedi Golnaz | Chamberland Jean-Francois | Datta Aniruddha | Dougherty EdwardR
Volume: 2009
Issue: 1
Year: 2009
Author(s): Faryabi Babak | Vahedi Golnaz | Chamberland Jean-Francois | Datta Aniruddha | Dougherty EdwardR Volume: 2009 Issue: 1 Year: 2009
Is Bagging Effective in the Classification of Small-Sample Genomic and Proteomic Data?
Author(s): Vu TT | Braga-Neto UM
Volume: 2009
Issue: 1
Year: 2009
Author(s): Vu TT | Braga-Neto UM Volume: 2009 Issue: 1 Year: 2009
Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data
Author(s): Gao Xin | Pu Daniel Q | Song Peter X-K
Volume: 2009
Issue: 1
Year: 2009
Author(s): Gao Xin | Pu Daniel Q | Song Peter X-K Volume: 2009 Issue: 1 Year: 2009
On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information
Author(s): Olsen Catharina | Meyer Patrick E | Bontempi Gianluca
Volume: 2009
Issue: 1
Year: 2009
Author(s): Olsen Catharina | Meyer Patrick E | Bontempi Gianluca Volume: 2009 Issue: 1 Year: 2009
Identifying Genes Involved in Cyclic Processes by Combining Gene Expression Analysis and Prior Knowledge
Author(s): Zhao Wentao | Serpedin Erchin | Dougherty Edward R
Volume: 2009
Issue: 1
Year: 2009
Author(s): Zhao Wentao | Serpedin Erchin | Dougherty Edward R Volume: 2009 Issue: 1 Year: 2009
Modelling Transcriptional Regulation with a Mixture of Factor Analyzers and Variational Bayesian Expectation Maximization
Author(s): Lin Kuang | Husmeier Dirk
Volume: 2009
Issue: 1
Year: 2009
Author(s): Lin Kuang | Husmeier Dirk Volume: 2009 Issue: 1 Year: 2009
Clustering of Gene Expression Data Based on Shape Similarity
Author(s): Hestilow Travis J | Huang Yufei
Volume: 2009
Issue: 1
Year: 2009
Author(s): Hestilow Travis J | Huang Yufei Volume: 2009 Issue: 1 Year: 2009
The Impact of Time Delays on the Robustness of Biological Oscillators and the Effect of Bifurcations on the Inverse Problem
Author(s): Radde Nicole
Volume: 2009
Issue: 1
Year: 2009
Author(s): Radde Nicole Volume: 2009 Issue: 1 Year: 2009
Selection of Statistical Thresholds in Graphical Models
Author(s): Almudevar Anthony
Volume: 2009
Issue: 1
Year: 2009
Author(s): Almudevar Anthony Volume: 2009 Issue: 1 Year: 2009
How to Improve Postgenomic Knowledge Discovery Using Imputation
Author(s): Sehgal Muhammad Shoaib B | Gondal Iqbal | Dooley Laurence S | Coppel Ross
Volume: 2009
Issue: 1
Year: 2009
Author(s): Sehgal Muhammad Shoaib B | Gondal Iqbal | Dooley Laurence S | Coppel Ross Volume: 2009 Issue: 1 Year: 2009
Reconstructing Generalized Logical Networks of Transcriptional Regulation in Mouse Brain from Temporal Gene Expression Data
Author(s): Song Mingzhou(Joe) | Lewis Chris K | Lance Eric R | Chesler Elissa J | Yordanova Roumyana Kirova | Langston Michael A | Lodowski Kerrie H | Bergeson Susan E
Volume: 2009
Issue: 1
Year: 2009
Author(s): Song Mingzhou(Joe) | Lewis Chris K | Lance Eric R | Chesler Elissa J | Yordanova Roumyana Kirova | Langston Michael A | Lodowski Kerrie H | Bergeson Susan E Volume: 2009 Issue: 1 Year: 2009
Adaptive Dynamics of Regulatory Networks: Size Matters
Author(s): Repsilber Dirk | Martinetz Thomas | Björklund Mats
Volume: 2009
Issue: 1
Year: 2009
Author(s): Repsilber Dirk | Martinetz Thomas | Björklund Mats Volume: 2009 Issue: 1 Year: 2009
Reverse Engineering of Gene Regulatory Networks: A Comparative Study
Author(s): Hache Hendrik | Lehrach Hans | Herwig Ralf
Volume: 2009
Issue: 1
Year: 2009
Author(s): Hache Hendrik | Lehrach Hans | Herwig Ralf Volume: 2009 Issue: 1 Year: 2009
