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Biology Direct

ISSN: 1745--6150
Publisher: BioMed Central


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A rebuttal to the comments on the genome order index and the Z-curve

Author(s): Zhang Ren
Volume: 6
Issue: 1
Year: 2011
Biased gene transfer and its implications for the concept of lineage

Author(s): Andam Cheryl | Gogarten J Peter
Volume: 6
Issue: 1
Year: 2011
Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome

Author(s): Seufferheld Manfredo | Kim Kyung | Whitfield James | Valerio Alejandro | Caetano-Anollés Gustavo
Volume: 6
Issue: 1
Year: 2011
Nonsynonymous substitution rate (Ka) is a relatively consistent parameter for defining fast-evolving and slow-evolving protein-coding genes

Author(s): Wang Dapeng | Liu Fei | Wang Lei | Huang Shi | Yu Jun
Volume: 6
Issue: 1
Year: 2011
Expression levels of microRNAs are not associated with their regulatory activities

Author(s): Liang Zhi | Zhou Hong | Zheng Haoran | Wu Jiarui
Volume: 6
Issue: 1
Year: 2011
Interplay of recombination and selection in the genomes of Chlamydia trachomatis

Author(s): Joseph Sandeep | Didelot Xavier | Gandhi Khanjan | Dean Deborah | Read Timothy
Volume: 6
Issue: 1
Year: 2011
Functional analysis of archaeal MBF1 by complementation studies in yeast

Author(s): Marrero Coto Jeannette | Ehrenhofer-Murray Ann | Pons Tirso | Siebers Bettina
Volume: 6
Issue: 1
Year: 2011
A Rooted Net of Life

Author(s): Williams David | Fournier Gregory | Lapierre Pascal | Swithers Kristen | Green Anna | Andam Cheryl | Gogarten J Peter
Volume: 6
Issue: 1
Year: 2011
On the relationship between the load and the variance of relative fitness

Author(s): Shnol Emmanuil | Ermakova Elena | Kondrashov Alexey
Volume: 6
Issue: 1
Year: 2011
Statistical methods for detecting periodic fragments in DNA sequence data

Author(s): Epps Julien | Ying Hua | Huttley Gavin
Volume: 6
Issue: 1
Year: 2011
How stands the Tree of Life a century and a half after The Origin?

Author(s): O'Malley Maureen | Koonin Eugene
Volume: 6
Issue: 1
Year: 2011
CREST - a large and diverse superfamily of putative transmembrane hydrolases

Author(s): Pei Jimin | Millay Douglas | Olson Eric | Grishin Nick
Volume: 6
Issue: 1
Year: 2011
Structural influence of gene networks on their inference: analysis of C3NET

Author(s): Altay Gökmen | Emmert-Streib Frank
Volume: 6
Issue: 1
Year: 2011
Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins

Author(s): Wong Wing-Cheong | Maurer-Stroh Sebastian | Eisenhaber Frank
Volume: 6
Issue: 1
Year: 2011
The advantages and disadvantages of horizontal gene transfer and the emergence of the first species

Author(s): Vogan Aaron | Higgs Paul
Volume: 6
Issue: 1
Year: 2011
Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli

Author(s): Beauregard-Racine Julie | Bicep Cédric | Schliep Klaus | Lopez Philippe | Lapointe François-Joseph | Bapteste Eric
Volume: 6
Issue: 1
Year: 2011
From the scala naturae to the symbiogenetic and dynamic tree of life

Author(s): Kutschera Ulrich
Volume: 6
Issue: 1
Year: 2011
ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates

Author(s): Li Juntao | Paramita Puteri | Choi Kwok | Karuturi R Krishna
Volume: 6
Issue: 1
Year: 2011
Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data

Author(s): Barozzi Iros | Termanini Alberto | Minucci Saverio | Natoli Gioacchino
Volume: 6
Issue: 1
Year: 2011
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Author(s): Makarova Kira | Aravind L | Wolf Yuri | Koonin Eugene
Volume: 6
Issue: 1
Year: 2011
MicroRNA expression in multiple myeloma is associated with genetic subtype, isotype and survival

Author(s): Chi Jianxiang | Ballabio Erica | Chen Xiao-He | Kušec Rajko | Taylor Steve | Hay Deborah | Tramonti Daniela | Saunders Nigel | Littlewood Timothy | Pezzella Francesco | Boultwood Jacqueline | Wainscoat James | Hatton Christian | Lawrie Charles
Volume: 6
Issue: 1
Year: 2011
Probable presence of an ubiquitous cryptic mitochondrial gene on the antisense strand of the cytochrome oxidase I gene

Author(s): Faure Eric | Delaye Luis | Tribolo Sandra | Levasseur Anthony | Seligmann Hervé | Barthélémy Roxane-Marie
Volume: 6
Issue: 1
Year: 2011
A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes

Author(s): Chernikova Diana | Motamedi Sam | Csürös Miklós | Koonin Eugene | Rogozin Igor
Volume: 6
Issue: 1
Year: 2011
A mathematical model for targeting chemicals to tissues by exploiting complex degradation

Author(s): Gardiner Bruce | Zhang Lihai | Smith David | Pivonka Peter | Grodzinsky Alan
Volume: 6
Issue: 1
Year: 2011
Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale

Author(s): Shmelkov Evgeny | Tang Zuojian | Aifantis Iannis | Statnikov Alexander
Volume: 6
Issue: 1
Year: 2011
Enhanced immunogenicity of pneumococcal surface adhesin A (PsaA) in mice via fusion to recombinant human B lymphocyte stimulator (BLyS)

Author(s): Gor Dennis | Ding Xuedong | Li Qing | Sultana Dilara | Mambula Salamatu | Bram Richard | Greenspan Neil
Volume: 6
Issue: 1
Year: 2011
The rhizome of Reclinomonas americana, Homo sapiens, Pediculus humanus and Saccharomyces cerevisiae mitochondria

Author(s): Georgiades Kalliopi | Raoult Didier
Volume: 6
Issue: 1
Year: 2011
Families of transposable elements, population structure and the origin of species

Author(s): Jurka Jerzy | Bao Weidong | Kojima Kenji
Volume: 6
Issue: 1
Year: 2011
Endosymbiont or host: who drove mitochondrial and plastid evolution?

Author(s): Gross Jeferson | Bhattacharya Debashish
Volume: 6
Issue: 1
Year: 2011
Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteins

Author(s): Peralta Humberto | Guerrero Gabriela | Aguilar Alejandro | Mora Jaime
Volume: 6
Issue: 1
Year: 2011
Causal graph-based analysis of genome-wide association data in rheumatoid arthritis

Author(s): Alekseyenko Alexander | Lytkin Nikita | Ai Jizhou | Ding Bo | Padyukov Leonid | Aliferis Constantin | Statnikov Alexander
Volume: 6
Issue: 1
Year: 2011
Phylogenetic analysis reveals wide distribution of globin X

Author(s): Dröge Jasmin | Makałowski Wojciech
Volume: 6
Issue: 1
Year: 2011
Molecular evolution of rbcL in three gymnosperm families: identifying adaptive and coevolutionary patterns

Author(s): Sen Lin | Fares Mario | Liang Bo | Gao Lei | Wang Bo | Wang Ting | Su Ying-Juan
Volume: 6
Issue: 1
Year: 2011
Early evolution without a tree of life

Author(s): Martin William
Volume: 6
Issue: 1
Year: 2011
Consequences of cell-to-cell P-glycoprotein transfer on acquired multidrug resistance in breast cancer: a cell population dynamics model

Author(s): Pasquier Jennifer | Magal Pierre | Boulangé-Lecomte Céline | Webb Glenn | Le Foll Frank
Volume: 6
Issue: 1
Year: 2011
Kinetics of the viral cycle influence pharmacodynamics of antiretroviral therapy

Author(s): Sedaghat Ahmad | Wilke Claus
Volume: 6
Issue: 1
Year: 2011
The struggle for life of the genome's selfish architects

Author(s): Hua-Van Aurélie | Le Rouzic Arnaud | Boutin Thibaud | Filée Jonathan | Capy Pierre
Volume: 6
Issue: 1
Year: 2011
On origin of genetic code and tRNA before translation

Author(s): Rodin Andrei | Szathmáry Eörs | Rodin Sergei
Volume: 6
Issue: 1
Year: 2011
The multiple personalities of Watson and Crick strands

Author(s): Cartwright Reed | Graur Dan
Volume: 6
Issue: 1
Year: 2011
Do clones degenerate over time? Explaining the genetic variability of asexuals through population genetic models

Author(s): Janko Karel | Drozd Pavel | Eisner Jan
Volume: 6
Issue: 1
Year: 2011
Structural analysis of hubs in human NR-RTK network

Author(s): Choura Mouna | Rebaï Ahmed
Volume: 6
Issue: 1
Year: 2011
Energetics and genetics across the prokaryote-eukaryote divide

Author(s): Lane Nick
Volume: 6
Issue: 1
Year: 2011
Telling the whole story in a 10,000-genome world

Author(s): Beiko Robert
Volume: 6
Issue: 1
Year: 2011
Impact of Alu repeats on the evolution of human p53 binding sites

Author(s): Cui Feng | Sirotin Michael | Zhurkin Victor
Volume: 6
Issue: 1
Year: 2011
Evolutionary patterns of phosphorylated serines

Author(s): Kurmangaliyev Yerbol | Goland Alexander | Gelfand Mikhail
Volume: 6
Issue: 1
Year: 2011
Gene gain and loss events in Rickettsia and Orientia species

Author(s): Georgiades Kalliopi | Merhej Vicky | El Karkouri Khalid | Raoult Didier | Pontarotti Pierre
Volume: 6
Issue: 1
Year: 2011
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