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Plant Methods

ISSN: 1746--4811
Publisher: BioMed Central


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Variable-angle total internal reflection fluorescence microscopy of intact cells of Arabidopsis thaliana

Author(s): Wan Yinglang | Ash William | Fan Lusheng | Hao Huaiqin | Kim Myung | Lin Jinxing
Volume: 7
Issue: 1
Year: 2011
A simple and efficient micrografting method for stably transformed Nicotiana attenuata plants to examine shoot-root signaling

Author(s): Fragoso Variluska | Goddard Hannah | Baldwin Ian | Kim Sang-Gyu
Volume: 7
Issue: 1
Year: 2011
De novo assembly of potential linear artificial chromosome constructs capped with expansive telomeric repeats

Author(s): Lin Li | Koo Dal-Hoe | Zhang Wenli | St Peter Joseph | Jiang Jiming
Volume: 7
Issue: 1
Year: 2011
A tiling microarray for global analysis of chloroplast genome expression in cucumber and other plants

Author(s): Żmieńko Agnieszka | Guzowska-Nowowiejska Magdalena | Urbaniak Radosław | Pląder Wojciech | Formanowicz Piotr | Figlerowicz Marek
Volume: 7
Issue: 1
Year: 2011
A rapid chemical method for lysing Arabidopsis cells for protein analysis

Author(s): Tsugama Daisuke | Liu Shenkui | Takano Tetsuo
Volume: 7
Issue: 1
Year: 2011
Visualization of plant viral suppressor silencing activity in intact leaf lamina by quantitative fluorescent imaging

Author(s): Stephan Dirk | Slabber Coba | George Gavin | Ninov Victor | Francis Kevin | Burger Johan
Volume: 7
Issue: 1
Year: 2011
Maize microarray annotation database

Author(s): Coetzer Nanette | Myburg Alexander | Berger Dave
Volume: 7
Issue: 1
Year: 2011
Development of expression vectors based on pepino mosaic virus

Author(s): Sempere Raquel | Gómez Pedro | Truniger Verónica | Aranda Miguel
Volume: 7
Issue: 1
Year: 2011
A rapid, simple method for the genetic discrimination of intact Arabidopsis thaliana mutant seeds using metabolic profiling by direct analysis in real-time mass spectrometry

Author(s): Kim Suk | Kim Hye | Kim Jong | Kwon Yong | Ahn Myung | Jang Young | Liu Jang
Volume: 7
Issue: 1
Year: 2011
Exploration of plant genomes in the FLAGdb++ environment

Author(s): Dèrozier Sandra | Samson Franck | Tamby Jean-Philippe | Guichard Cécile | Brunaud Véronique | Grevet Philippe | Gagnot Séverine | Label Philippe | Leplé Jean-Charles | Lecharny Alain | Aubourg Sébastien
Volume: 7
Issue: 1
Year: 2011
A novel method for prenylquinone profiling in plant tissues by ultra-high pressure liquid chromatography-mass spectrometry

Author(s): Martinis Jacopo | Kessler Felix | Glauser Gaetan
Volume: 7
Issue: 1
Year: 2011
Rapid analysis of seed size in Arabidopsis for mutant and QTL discovery

Author(s): Herridge Rowan | Day Robert | Baldwin Samantha | Macknight Richard
Volume: 7
Issue: 1
Year: 2011
Matrix-assisted laser desorption/ionisation mass spectrometry imaging and its development for plant protein imaging

Author(s): Grassl Julia | Taylor Nicolas | Millar A Harvey
Volume: 7
Issue: 1
Year: 2011
Accurate inference of shoot biomass from high-throughput images of cereal plants

Author(s): Golzarian Mahmood | Frick Ross | Rajendran Karthika | Berger Bettina | Roy Stuart | Tester Mark | Lun Desmond
Volume: 7
Issue: 1
Year: 2011
A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes

Author(s): Zhang Yang | Su Jianbin | Duan Shan | Ao Ying | Dai Jinran | Liu Jun | Wang Peng | Li Yuge | Liu Bing | Feng Dongru | Wang Jinfa | Wang Hongbin
Volume: 7
Issue: 1
Year: 2011
An effective virus-based gene silencing method for functional genomics studies in common bean

Author(s): Díaz-Camino Claudia | Annamalai Padmanaban | Sanchez Federico | Kachroo Aardra | Ghabrial Said
Volume: 7
Issue: 1
Year: 2011
A high-resolution method for the localization of proanthocyanidins in plant tissues

Author(s): Abeynayake Shamila | Panter Stephen | Mouradov Aidyn | Spangenberg German
Volume: 7
Issue: 1
Year: 2011
A simple and efficient method for isolating small RNAs from different plant species

Author(s): Rosas-Cárdenas Flor de Fátima | Durán-Figueroa Noé | Vielle-Calzada Jean-Philippe | Cruz-Hernández Andrés | Marsch-Martínez Nayelli | de Folter Stefan
Volume: 7
Issue: 1
Year: 2011
Arabidopsis seedling flood-inoculation technique: a rapid and reliable assay for studying plant-bacterial interactions

Author(s): Ishiga Yasuhiro | Ishiga Takako | Uppalapati Srinivasa | Mysore Kirankumar
Volume: 7
Issue: 1
Year: 2011
Protocol: A simple phenol-based method for 96-well extraction of high quality RNA from Arabidopsis

Author(s): Box Mathew | Coustham Vincent | Dean Caroline | Mylne Joshua
Volume: 7
Issue: 1
Year: 2011
Agrobacterium-mediated transformation of safflower and the efficient recovery of transgenic plants via grafting

Author(s): Belide Srinivas | Hac Luch | Singh Surinder | Green Allan | Wood Craig
Volume: 7
Issue: 1
Year: 2011
Protocol: An updated integrated methodology for analysis of metabolites and enzyme activities of ethylene biosynthesis

Author(s): Bulens Inge | Van de Poel Bram | Hertog Maarten | De Proft Maurice | Geeraerd Annemie | Nicolaï Bart
Volume: 7
Issue: 1
Year: 2011
Delivering high-resolution landmarks using inkjet micropatterning for spatial monitoring of leaf expansion

Author(s): Wang Lisheng | Beyer Simon | Cronk Quentin | Walus Konrad
Volume: 7
Issue: 1
Year: 2011
A novel procedure for the quantitative analysis of metabolites, storage products and transcripts of laser microdissected seed tissues of Brassica napus

Author(s): Schiebold Silke | Tschiersch Henning | Borisjuk Ljudmilla | Heinzel Nicolas | Radchuk Ruslana | Rolletschek Hardy
Volume: 7
Issue: 1
Year: 2011
A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange

Author(s): Shi Xue | Zeng Haiyang | Xue Yadong | Luo Meizhong
Volume: 7
Issue: 1
Year: 2011
Efficient virus-induced gene silencing in apple, pear and Japanese pear using Apple latent spherical virus vectors

Author(s): Sasaki Shintarou | Yamagishi Noriko | Yoshikawa Nobuyuki
Volume: 7
Issue: 1
Year: 2011
Convergence of developmental mutants into a single tomato model system: 'Micro-Tom' as an effective toolkit for plant development research

Author(s): Carvalho Rogério | Campos Marcelo | Pino Lilian | Crestana Simone | Zsögön Agustin | Lima Joni | Benedito Vagner | Peres Lázaro
Volume: 7
Issue: 1
Year: 2011
Reverse genetics in Chlamydomonas: a platform for isolating insertional mutants

Author(s): Gonzalez-Ballester David | Pootakham Wirulda | Mus Florence | Yang Wenqiang | Catalanotti Claudia | Magneschi Leonardo | de Montaigu Amaury | Higuera Jose | Prior Matthew | Galván Aurora | Fernandez Emilio | Grossman Arthur
Volume: 7
Issue: 1
Year: 2011
An aeroponic culture system for the study of root herbivory on Arabidopsis thaliana

Author(s): Vaughan Martha | Tholl Dorothea | Tokuhisa James
Volume: 7
Issue: 1
Year: 2011
ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions

Author(s): Muiño Jose | Kaufmann Kerstin | van Ham Roeland | Angenent Gerco | Krajewski Pawel
Volume: 7
Issue: 1
Year: 2011
High frequency, cell type-specific visualization of fluorescent-tagged genomic sites in interphase and mitotic cells of living Arabidopsis plants

Author(s): Matzke Antonius | Watanabe Koichi | van der Winden Johannes | Naumann Ulf | Matzke Marjori
Volume: 6
Issue: 1
Year: 2010
Rapid expression of transgenes driven by seed-specific constructs in leaf tissue: DHA production

Author(s): Petrie James | Shrestha Pushkar | Liu Qing | Mansour Maged | Wood Craig | Zhou Xue-Rong | Nichols Peter | Green Allan | Singh Surinder
Volume: 6
Issue: 1
Year: 2010
Normalization using ploidy and genomic DNA copy number allows absolute quantification of transcripts, proteins and metabolites in cells

Author(s): Shimada Hiroshi | Obayashi Takeshi | Takahashi Naoki | Matsui Minami | Sakamoto Atsushi
Volume: 6
Issue: 1
Year: 2010
A simple, rapid method to isolate salt glands for three-dimensional visualization, fluorescence imaging and cytological studies

Author(s): Tan Wee-Kee | Lim Tit-Meng | Loh Chiang-Shiong
Volume: 6
Issue: 1
Year: 2010
High-contrast three-dimensional imaging of the Arabidopsis leaf enables the analysis of cell dimensions in the epidermis and mesophyll

Author(s): Wuyts Nathalie | Palauqui Jean-Christophe | Conejero Geneviève | Verdeil Jean-Luc | Granier Christine | Massonnet Catherine
Volume: 6
Issue: 1
Year: 2010
NEATTILL: A simplified procedure for nucleic acid extraction from arrayed tissue for TILLING and other high-throughput reverse genetic applications

Author(s): Sreelakshmi Yellamaraju | Gupta Soni | Bodanapu Reddaiah | Chauhan Vineeta | Hanjabam Mickey | Thomas Sherinmol | Mohan Vijee | Sharma Sulabha | Srinivasan Rajeswari | Sharma Rameshwar
Volume: 6
Issue: 1
Year: 2010
Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

Author(s): Atherton Robin | McComish Bennet | Shepherd Lara | Berry Lorraine | Albert Nick | Lockhart Peter
Volume: 6
Issue: 1
Year: 2010
The Rg1 allele as a valuable tool for genetic transformation of the tomato 'Micro-Tom' model system

Author(s): Pino Lilian | Lombardi-Crestana Simone | Azevedo Mariana | Scotton Danielle | Borgo Lucélia | Quecini Vera | Figueira Antonio | Peres Lázaro
Volume: 6
Issue: 1
Year: 2010
A rapid and robust assay for detection of S-phase cell cycle progression in plant cells and tissues by using ethynyl deoxyuridine

Author(s): Kotogány Edit | Dudits Dénes | Horváth Gábor | Ayaydin Ferhan
Volume: 6
Issue: 1
Year: 2010
Protocol: a simple gel-free method for SNP genotyping using allele-specific primers in rice and other plant species

Author(s): Hirotsu Naoki | Murakami Naomi | Kashiwagi Takayuki | Ujiie Kazuhiro | Ishimaru Ken
Volume: 6
Issue: 1
Year: 2010
Documentation system for plant transformation service and research

Author(s): Köhl Karin | Gremmels Jürgen
Volume: 6
Issue: 1
Year: 2010
pH-sensitivity of YFP provides an intracellular indicator of programmed cell death

Author(s): Young Bennett | Wightman Raymond | Blanvillain Robert | Purcel Sydney | Gallois Patrick
Volume: 6
Issue: 1
Year: 2010
SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea

Author(s): Coetzer Nanette | Gazendam Inge | Oelofse Dean | Berger Dave
Volume: 6
Issue: 1
Year: 2010
Proposal for field sampling of plants and processing in the lab for environmental metabolic fingerprinting

Author(s): Maier Tanja | Kuhn Jürgen | Müller Caroline
Volume: 6
Issue: 1
Year: 2010
Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray

Author(s): Holman Tara | Wilson Michael | Kenobi Kim | Dryden Ian | Hodgman T | Wood Andrew | Holdsworth Michael
Volume: 6
Issue: 1
Year: 2010
Protocol: fine-tuning of a Chromatin Immunoprecipitation (ChIP) protocol in tomato

Author(s): Ricardi Martiniano | González Rodrigo | Iusem Norberto
Volume: 6
Issue: 1
Year: 2010
Investigations of barley stripe mosaic virus as a gene silencing vector in barley roots and in Brachypodium distachyon and oat

Author(s): Pacak Andrzej | Geisler Katrin | Jørgensen Bodil | Barciszewska-Pacak Maria | Nilsson Lena | Nielsen Tom | Johansen Elisabeth | Grønlund Mette | Jakobsen Iver | Albrechtsen Merete
Volume: 6
Issue: 1
Year: 2010
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