LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine
Author(s): Bath Timothy | Bozdag Selcuk | Afzal Vackar | Crowther Daniel
Volume: 6
Issue: 1
Year: 2011
Author(s): Bath Timothy | Bozdag Selcuk | Afzal Vackar | Crowther Daniel Volume: 6 Issue: 1 Year: 2011
ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing
Author(s): Misawa Kazuharu | Kamatani Naoyuki
Volume: 6
Issue: 1
Year: 2011
Author(s): Misawa Kazuharu | Kamatani Naoyuki Volume: 6 Issue: 1 Year: 2011
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes
Author(s): Galardini Marco | Biondi Emanuele | Bazzicalupo Marco | Mengoni Alessio
Volume: 6
Issue: 1
Year: 2011
Author(s): Galardini Marco | Biondi Emanuele | Bazzicalupo Marco | Mengoni Alessio Volume: 6 Issue: 1 Year: 2011
Nephele: genotyping via complete composition vectors and MapReduce
Author(s): Colosimo Marc | Peterson Matthew | Mardis Scott | Hirschman Lynette
Volume: 6
Issue: 1
Year: 2011
Author(s): Colosimo Marc | Peterson Matthew | Mardis Scott | Hirschman Lynette Volume: 6 Issue: 1 Year: 2011
Creating web applications for spatial epidemiological analysis and mapping in R using Rwui
Author(s): Newton Richard | Deonarine Andrew | Wernisch Lorenz
Volume: 6
Issue: 1
Year: 2011
Author(s): Newton Richard | Deonarine Andrew | Wernisch Lorenz Volume: 6 Issue: 1 Year: 2011
Tools for efficient epistasis detection in genome-wide association study
Author(s): Zhang Xiang | Huang Shunping | Zou Fei | Wang Wei
Volume: 6
Issue: 1
Year: 2011
Author(s): Zhang Xiang | Huang Shunping | Zou Fei | Wang Wei Volume: 6 Issue: 1 Year: 2011
WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results
Author(s): Joshi Vineet | Freudenberg Johannes | Hu Zhen | Medvedovic Mario
Volume: 6
Issue: 1
Year: 2011
Author(s): Joshi Vineet | Freudenberg Johannes | Hu Zhen | Medvedovic Mario Volume: 6 Issue: 1 Year: 2011
SNIT: SNP identification for strain typing
Author(s): Vijaya Satya Ravi | Zavaljevski Nela | Reifman Jaques
Volume: 6
Issue: 1
Year: 2011
Author(s): Vijaya Satya Ravi | Zavaljevski Nela | Reifman Jaques Volume: 6 Issue: 1 Year: 2011
Parallel biocomputing
Author(s): Kompass Kenneth | Hoffmann Thomas | Witte John
Volume: 6
Issue: 1
Year: 2011
Author(s): Kompass Kenneth | Hoffmann Thomas | Witte John Volume: 6 Issue: 1 Year: 2011
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
Author(s): Oesper Layla | Merico Daniele | Isserlin Ruth | Bader Gary
Volume: 6
Issue: 1
Year: 2011
Author(s): Oesper Layla | Merico Daniele | Isserlin Ruth | Bader Gary Volume: 6 Issue: 1 Year: 2011
SAMMate: a GUI tool for processing short read alignments in SAM/BAM format
Author(s): Xu Guorong | Deng Nan | Zhao Zhiyu | Judeh Thair | Flemington Erik | Zhu Dongxiao
Volume: 6
Issue: 1
Year: 2011
Author(s): Xu Guorong | Deng Nan | Zhao Zhiyu | Judeh Thair | Flemington Erik | Zhu Dongxiao Volume: 6 Issue: 1 Year: 2011
KBWS: an EMBOSS associated package for accessing bioinformatics web services
Author(s): Oshita Kazuki | Arakawa Kazuharu | Tomita Masaru
Volume: 6
Issue: 1
Year: 2011
Author(s): Oshita Kazuki | Arakawa Kazuharu | Tomita Masaru Volume: 6 Issue: 1 Year: 2011
Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format
Author(s): Webb Ryan | Ma'ayan Avi
Volume: 6
Issue: 1
Year: 2011
Author(s): Webb Ryan | Ma'ayan Avi Volume: 6 Issue: 1 Year: 2011
A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks
Author(s): Kyoda Koji | Baba Kotaro | Kitano Hiroaki | Onami Shuichi
Volume: 6
Issue: 1
Year: 2011
Author(s): Kyoda Koji | Baba Kotaro | Kitano Hiroaki | Onami Shuichi Volume: 6 Issue: 1 Year: 2011
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text
Author(s): Baroukh Caroline | Jenkins Sherry | Dannenfelser Ruth | Ma'ayan Avi
Volume: 6
Issue: 1
Year: 2011
Author(s): Baroukh Caroline | Jenkins Sherry | Dannenfelser Ruth | Ma'ayan Avi Volume: 6 Issue: 1 Year: 2011
Dockres: a computer program that analyzes the output of virtual screening of small molecules
Author(s): Mezei Mihaly | Zhou Ming-Ming
Volume: 5
Issue: 1
Year: 2010
Author(s): Mezei Mihaly | Zhou Ming-Ming Volume: 5 Issue: 1 Year: 2010
MADAM - An open source meta-analysis toolbox for R and Bioconductor
Author(s): Kugler Karl | Mueller Laurin | Graber Armin
Volume: 5
Issue: 1
Year: 2010
Author(s): Kugler Karl | Mueller Laurin | Graber Armin Volume: 5 Issue: 1 Year: 2010
ParaHaplo 2.0: a program package for haplotype-estimation and haplotype-based whole-genome association study using parallel computing
Author(s): Misawa Kazuharu | Kamatani Naoyuki
Volume: 5
Issue: 1
Year: 2010
Author(s): Misawa Kazuharu | Kamatani Naoyuki Volume: 5 Issue: 1 Year: 2010
VersaCount: customizable manual tally software for cell counting
Author(s): Kim Charles | DeRisi Joseph
Volume: 5
Issue: 1
Year: 2010
Author(s): Kim Charles | DeRisi Joseph Volume: 5 Issue: 1 Year: 2010
EntrezAJAX: direct web browser access to the Entrez Programming Utilities
Author(s): Loman Nicholas | Pallen Mark
Volume: 5
Issue: 1
Year: 2010
Author(s): Loman Nicholas | Pallen Mark Volume: 5 Issue: 1 Year: 2010
Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
Author(s): Pedamallu Chandra Sekhar | Posfai Janos
Volume: 5
Issue: 1
Year: 2010
Author(s): Pedamallu Chandra Sekhar | Posfai Janos Volume: 5 Issue: 1 Year: 2010
DOG-SPOT database for comprehensive management of dog genetic research data
Author(s): Powell Julie | Allen Jeremy | Sutter Nathan
Volume: 5
Issue: 1
Year: 2010
Author(s): Powell Julie | Allen Jeremy | Sutter Nathan Volume: 5 Issue: 1 Year: 2010
IHE cross-enterprise document sharing for imaging: interoperability testing software
Author(s): Noumeir Rita | Renaud Bérubé
Volume: 5
Issue: 1
Year: 2010
Author(s): Noumeir Rita | Renaud Bérubé Volume: 5 Issue: 1 Year: 2010
GTC: A web server for integrating systems biology data with web tools and desktop applications
Author(s): Tenenbaum Dan | Bare J Christopher | Baliga Nitin
Volume: 5
Issue: 1
Year: 2010
Author(s): Tenenbaum Dan | Bare J Christopher | Baliga Nitin Volume: 5 Issue: 1 Year: 2010
KinImmerse: Macromolecular VR for NMR ensembles
Author(s): Block Jeremy | Zielinski David | Chen Vincent | Davis Ian | Vinson E Claire | Brady Rachael | Richardson Jane | Richardson David
Volume: 4
Issue: 1
Year: 2009
Author(s): Block Jeremy | Zielinski David | Chen Vincent | Davis Ian | Vinson E Claire | Brady Rachael | Richardson Jane | Richardson David Volume: 4 Issue: 1 Year: 2009
A web server for interactive and zoomable Chaos Game Representation images
Author(s): Arakawa Kazuharu | Oshita Kazuki | Tomita Masaru
Volume: 4
Issue: 1
Year: 2009
Author(s): Arakawa Kazuharu | Oshita Kazuki | Tomita Masaru Volume: 4 Issue: 1 Year: 2009
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format
Author(s): Krawczyk Justina | Goesmann Alexander | Nolte Ralf | Werber Martin | Weisshaar Bernd
Volume: 4
Issue: 1
Year: 2009
Author(s): Krawczyk Justina | Goesmann Alexander | Nolte Ralf | Werber Martin | Weisshaar Bernd Volume: 4 Issue: 1 Year: 2009
GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction
Author(s): Browne Fiona | Wang Haiying | Zheng Huiru | Azuaje Francisco
Volume: 4
Issue: 1
Year: 2009
Author(s): Browne Fiona | Wang Haiying | Zheng Huiru | Azuaje Francisco Volume: 4 Issue: 1 Year: 2009
A software pipeline for processing and identification of fungal ITS sequences
Author(s): Nilsson R Henrik | Bok Gunilla | Ryberg Martin | Kristiansson Erik | Hallenberg Nils
Volume: 4
Issue: 1
Year: 2009
Author(s): Nilsson R Henrik | Bok Gunilla | Ryberg Martin | Kristiansson Erik | Hallenberg Nils Volume: 4 Issue: 1 Year: 2009
ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing
Author(s): Misawa Kazuharu | Kamatani Naoyuki
Volume: 4
Issue: 1
Year: 2009
Author(s): Misawa Kazuharu | Kamatani Naoyuki Volume: 4 Issue: 1 Year: 2009
HAMSTER: visualizing microarray experiments as a set of minimum spanning trees
Author(s): Wan Raymond | Kiseleva Larisa | Harada Hajime | Mamitsuka Hiroshi | Horton Paul
Volume: 4
Issue: 1
Year: 2009
Author(s): Wan Raymond | Kiseleva Larisa | Harada Hajime | Mamitsuka Hiroshi | Horton Paul Volume: 4 Issue: 1 Year: 2009
Motmot, an open-source toolkit for realtime video acquisition and analysis
Author(s): Straw Andrew | Dickinson Michael
Volume: 4
Issue: 1
Year: 2009
Author(s): Straw Andrew | Dickinson Michael Volume: 4 Issue: 1 Year: 2009
Epigrass: a tool to study disease spread in complex networks
Author(s): Coelho Flávio | Cruz Oswaldo | Codeço Cláudia
Volume: 3
Issue: 1
Year: 2008
Author(s): Coelho Flávio | Cruz Oswaldo | Codeço Cláudia Volume: 3 Issue: 1 Year: 2008
Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules
Author(s): Muhonen Pirkko | Parthasarathy Ranga | Janckila Anthony | Büki Kalman | Väänänen H Kalervo
Volume: 3
Issue: 1
Year: 2008
Author(s): Muhonen Pirkko | Parthasarathy Ranga | Janckila Anthony | Büki Kalman | Väänänen H Kalervo Volume: 3 Issue: 1 Year: 2008
The Multiscale Systems Immunology project: software for cell-based immunological simulation
Author(s): Mitha Faheem | Lucas Timothy | Feng Feng | Kepler Thomas | Chan Cliburn
Volume: 3
Issue: 1
Year: 2008
Author(s): Mitha Faheem | Lucas Timothy | Feng Feng | Kepler Thomas | Chan Cliburn Volume: 3 Issue: 1 Year: 2008
Boolean network simulations for life scientists
Author(s): Albert István | Thakar Juilee | Li Song | Zhang Ranran | Albert Réka
Volume: 3
Issue: 1
Year: 2008
Author(s): Albert István | Thakar Juilee | Li Song | Zhang Ranran | Albert Réka Volume: 3 Issue: 1 Year: 2008
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Author(s): Parker Nicolas | Parker Andrew
Volume: 3
Issue: 1
Year: 2008
Author(s): Parker Nicolas | Parker Andrew Volume: 3 Issue: 1 Year: 2008
Purposeful selection of variables in logistic regression
Author(s): Bursac Zoran | Gauss C Heath | Williams David Keith | Hosmer David
Volume: 3
Issue: 1
Year: 2008
Author(s): Bursac Zoran | Gauss C Heath | Williams David Keith | Hosmer David Volume: 3 Issue: 1 Year: 2008
Flow: Statistics, visualization and informatics for flow cytometry
Author(s): Frelinger Jacob | Kepler Thomas | Chan Cliburn
Volume: 3
Issue: 1
Year: 2008
Author(s): Frelinger Jacob | Kepler Thomas | Chan Cliburn Volume: 3 Issue: 1 Year: 2008
Faunus: An object oriented framework for molecular simulation
Author(s): Lund Mikael | Trulsson Martin | Persson Björn
Volume: 3
Issue: 1
Year: 2008
Author(s): Lund Mikael | Trulsson Martin | Persson Björn Volume: 3 Issue: 1 Year: 2008
LSID Tester, a tool for testing Life Science Identifier resolution services
Author(s): Page Roderic
Volume: 3
Issue: 1
Year: 2008
Author(s): Page Roderic Volume: 3 Issue: 1 Year: 2008
Permutation – based statistical tests for multiple hypotheses
Author(s): Camargo Anyela | Azuaje Francisco | Wang Haiying | Zheng Huiru
Volume: 3
Issue: 1
Year: 2008
Author(s): Camargo Anyela | Azuaje Francisco | Wang Haiying | Zheng Huiru Volume: 3 Issue: 1 Year: 2008
The MERG Suite: Tools for discovering competencies and associated learning resources
Author(s): Bhupatiraju Ravi | Hersh William | Smothers Valerie | Fordis Michael | Greene Peter
Volume: 3
Issue: 1
Year: 2008
Author(s): Bhupatiraju Ravi | Hersh William | Smothers Valerie | Fordis Michael | Greene Peter Volume: 3 Issue: 1 Year: 2008
Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis
Author(s): Scaria Joy | Sreedharan Aswathy | Chang Yung-Fu
Volume: 3
Issue: 1
Year: 2008
Author(s): Scaria Joy | Sreedharan Aswathy | Chang Yung-Fu Volume: 3 Issue: 1 Year: 2008
CRANKITE: A fast polypeptide backbone conformation sampler
Author(s): Podtelezhnikov Alexei | Wild David
Volume: 3
Issue: 1
Year: 2008
Author(s): Podtelezhnikov Alexei | Wild David Volume: 3 Issue: 1 Year: 2008
OSPACS: Ultrasound image management system
Author(s): Stott Will | Ryan Andy | Jacobs Ian | Menon Usha | Bessant Conrad | Jones Christopher
Volume: 3
Issue: 1
Year: 2008
Author(s): Stott Will | Ryan Andy | Jacobs Ian | Menon Usha | Bessant Conrad | Jones Christopher Volume: 3 Issue: 1 Year: 2008
A Perl toolkit for LIMS development
Author(s): Morris James | Gayther Simon | Jacobs Ian | Jones Christopher
Volume: 3
Issue: 1
Year: 2008
Author(s): Morris James | Gayther Simon | Jacobs Ian | Jones Christopher Volume: 3 Issue: 1 Year: 2008
Wndchrm – an open source utility for biological image analysis
Author(s): Shamir Lior | Orlov Nikita | Eckley D Mark | Macura Tomasz | Johnston Josiah | Goldberg Ilya
Volume: 3
Issue: 1
Year: 2008
Author(s): Shamir Lior | Orlov Nikita | Eckley D Mark | Macura Tomasz | Johnston Josiah | Goldberg Ilya Volume: 3 Issue: 1 Year: 2008
FASH: A web application for nucleotides sequence search
Author(s): Veksler-Lublinksy Isana | Barash Danny | Avisar Chai | Troim Einav | Chew Paul | Kedem Klara
Volume: 3
Issue: 1
Year: 2008
Author(s): Veksler-Lublinksy Isana | Barash Danny | Avisar Chai | Troim Einav | Chew Paul | Kedem Klara Volume: 3 Issue: 1 Year: 2008
Pspace: a program that assesses protein space
Author(s): Mezei Mihaly | Zhou Ming-Ming
Volume: 2
Issue: 1
Year: 2007
Author(s): Mezei Mihaly | Zhou Ming-Ming Volume: 2 Issue: 1 Year: 2007
