Measuring the shapes of macromolecules – and why it matters
Author(s): Jie Li | Paul Mach | Patrice Koehl
Volume: 8
Issue: 12
Year: 2013




Inverted Topologies in Membrane Proteins: A Mini-Review
Author(s): Amanda M Duran | Jens Meiler
Volume: 8
Issue: 11
Year: 2013




Structure-based Methods for Computational Protein Functional Site Prediction
Author(s): Dukka B KC
Volume: 8
Issue: 11
Year: 2013




Reconstruction of SAXS Profiles from Protein Structures
Author(s): Daniel K Putnam | Edward W Lowe Jr | Jens Meiler
Volume: 8
Issue: 11
Year: 2013




Frequency of dipeptides and antidipeptides
Author(s): Oliviero Carugo
Volume: 8
Issue: 11
Year: 2013




Autophagy in Plasmodium, a multifunctional pathway?
Author(s): Adelaide U.P. Hain | Jürgen Bosch
Volume: 8
Issue: 11
Year: 2013




Recent advances in functional region prediction by using structural and evolutionary information – Remaining problems and future extensions
Author(s): Wataru Nemoto | Akira Saito | Hayato Oikawa
Volume: 8
Issue: 11
Year: 2013




A Sieve-Raft Hypothesis for the regulation of endothelial fenestrations
Author(s): Victoria C. Cogger | Ute Roessner | Alessandra Warren | Robin Fraser | David G. Le Couteur
Volume: 8
Issue: 11
Year: 2013




From plant genomes to protein families: computational tools
Author(s): Manuel Martinez
Volume: 8
Issue: 10
Year: 2013




Robustness in experimental design: A study on the reliability of selection approaches
Author(s): Stefan Brandmaier | Igor V Tetko
Volume: 7
Issue: 9
Year: 2013




A method to predict edge strands in beta-sheets from protein sequences
Author(s): Antonin Guilloux | Bernard Caudron | Jean-Luc Jestin
Volume: 7
Issue: 9
Year: 2013




Three-dimensional mapping of differential amino acids of human, murine, canine and equine TLR4/MD-2 receptor complexes conferring endotoxic activation by lipid A, antagonism by Eritoran and species-dependent activities of lipid IVa in the mammalian LPS sensor system
Author(s): Thomas Scior | Jorge Lozano-Aponte | Vianihuini Figueroa-Vazquez | Julian A. Yunes-Rojas | Ulrich Zähringer | Christian Alexander
Volume: 7
Issue: 9
Year: 2013




Changes in the genome-wide localization pattern of Sir3 in Saccharomyces cerevisiae during different growth stages
Author(s): Shu-Yun Tung | Kuan-Wei Lee | Jia-Yang Hong | Sue-Ping Lee | Hsiao-Hsuian Shen | Gunn-Guang Liou
Volume: 7
Issue: 8
Year: 2013




Biochemical and Biophysical Characterization of Recombinant Yeast Proteasome Maturation Factor UMP1
Author(s): Bebiana Sá-Moura | Ana Marisa Simões | Joana Fraga | Humberto Fernandes | Isabel A. Abreu | Hugo M. Botelho | Cláudio M. Gomes | António J. Marques | R. Jürgen Dohmen | Paula C. Ramos | Sandra Macedo-Ribeiro
Volume: 7
Issue: 8
Year: 2013




A Network View on Parkinson’s Disease
Author(s): Sreedevi Chandrasekaran | Danail Bonchev
Volume: 7
Issue: 8
Year: 2013




The biological microprocessor, or how to build a computer with biological parts
Author(s): Gerd HG Moe-Behrens
Volume: 7
Issue: 8
Year: 2013




Therapeutic application of nanotechnology in cardiovascular and pulmonary regeneration
Author(s): Young Wook Chun | Spencer W Crowder | Steven C Mehl | Xingtong Wang | Hojae Bae | Hak-joon Sung
Volume: 7
Issue: 8
Year: 2013




A Two-stage Peak Alignment Algorithm for Two-Dimensional Gas Chromatography Time-of-Flight Mass Spectrometry-Based Metabolomics
Author(s): Bing Wang
Volume: 7
Issue: 8
Year: 2013




Biomarker signature identification in “omics” data with multi-class outcome
Author(s): Vincenzo Lagani | George Kortas | Ioannis Tsamardinos
Volume: 6
Issue: 7
Year: 2013




The role of mitochondria in the development and progression of lung cancer
Author(s): Emily R Roberts | Kelly Jean Thomas
Volume: 6
Issue: 7
Year: 2013




Bile acid binding protein: a versatile host of small hydrophobic ligands for applications in the fields of MRI contrast agents and bio-nanomaterials
Author(s): Katiuscia Pagano | Simona Tomaselli | Serena Zanzoni | Michael Assfalg | Henriette Molinari | Laura Ragona
Volume: 6
Issue: 7
Year: 2013




ChromatoGate: A Tool for Detecting Base Mis-Calls in Multiple Sequence Alignments by Semi-Automatic Chromatogram Inspection
Author(s): Nikolaos Alachiotis | Emmanouella Vogiatzi | Pavlos Pavlidis | Alexandros Stamatakis
Volume: 6
Issue: 7
Year: 2013




Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience
Author(s): Fernanda A Dorella | Alfonso Gala-Garcia | Anne C Pinto | Boutros Sarrouh | Camila A Antunes | Dayana Ribeiro | Flávia Aburjaile | Karina K Fiaux | Luis C Guimarães | Nubia Seyffert | Rachid A El-Aouar | Renata Silva | Syed S Hassan | Thiago LP Casto | Wanderson S Marques | Rommel Ramos | Adriana Carneiro | Pablo de Sá | Anderson Miyoshi | Vasco Azevedo | Artur Silva
Volume: 6
Issue: 7
Year: 2013




Probing Genome Maintenance Functions of human RECQ1
Author(s): Furqan Sami | Sudha Sharma
Volume: 6
Issue: 7
Year: 2013




The Role of INDY in Metabolic Regulation
Author(s): Diana M Willmes | Andreas L Birkenfeld
Volume: 6
Issue: 7
Year: 2013




Study of Uremic Toxin Fluxes Across Nanofabricated Hemodialysis Membranes Using Irreversible Thermodynamics
Author(s): Assem Hedayat | Jerzy Szpunar | N A P Kiran Kumar | Rob Peace | Hamdi Elmoselhi | Ahmed Shoker
Volume: 6
Issue: 7
Year: 2013




Biomarker Identification in Breast Cancer: Beta-Adrenergic Receptor Signaling and Pathways to Therapeutic Response
Author(s): Liana E. Kafetzopoulou | David J. Boocock | Gopal Krishna R. Dhondalay | Desmond G. Powe | Graham R. Ball
Volume: 6
Issue: 7
Year: 2013




The role of Lipoxin A4 in Cystic Fibrosis Lung Disease
Author(s): Valérie Urbach | Gerard Higgins | Paul Buchanan | Fiona Ringholz
Volume: 6
Issue: 7
Year: 2013




The albumin-binding domain as a scaffold for protein engineering
Author(s): Johan Nilvebrant | Sophia Hober
Volume: 6
Issue: 7
Year: 2013




Tribology of bio-inspired nanowrinkled films on ultrasoft substrates
Author(s): Juergen M. Lackner | Wolfgang Waldhauser | Lukasz Major | Christian Teichert | Paul Hartmann
Volume: 6
Issue: 7
Year: 2013




Characterization of ENU-induced Mutations in Red Blood Cell Structural Proteins
Author(s): Katrina Kildey | Robert L Flower | Thu V Tran | Robert Tunningley | Jonathan Harris | Melinda M Dean
Volume: 6
Issue: 7
Year: 2013




The Cytotoxic Effects of Low Intensity Visible and Infrared Light on Human Breast Cancer (MCF7) cells
Author(s): P Peidaee | N Almansour | R Shukla | E Pirogova
Volume: 6
Issue: 7
Year: 2013




The Innovative Medicines Initiative: a Public Private Partnership Model to Foster Drug Discovery
Author(s): Elisabetta Vaudano
Volume: 6
Issue: 7
Year: 2013




Searching for Electrical Properties, Phenomena and Mechanisms in the Construction and Function of Chromosomes
Author(s): Ivan Kanev | Wai-Ning Mei | Akira Mizuno | Kristi DeHaai | Jennifer Sanmann | Michelle Hess | Lois Starr | Jennifer Grove | Bhavana Dave | Warren Sanger
Volume: 6
Issue: 7
Year: 2013




Methods for recombinant expression and functional characterization of human cannabinoid receptor CB2
Author(s): Alexei A Yeliseev
Volume: 6
Issue: 7
Year: 2013




Chemical Structure Identification in Metabolomics: Computational Modeling of Experimental Features
Author(s): Lochana C Menikarachchi | Mai A Hamdalla | Dennis W Hill | David F Grant
Volume: 5
Issue: 6
Year: 2013




MD simulation studies to investigate iso-energetic conformational behaviour of modified nucleosides m2G and m22G present in tRNA
Author(s): Rohit S Bavi | Susmit B Sambhare | Kailas D Sonawane
Volume: 5
Issue: 6
Year: 2013




Small world network strategies for studying protein structures and binding
Author(s): Neil R Taylor
Volume: 5
Issue: 6
Year: 2013




Molecular Dynamics Computer Simulations of Multidrug RND Efflux Pumps
Author(s): Paolo Ruggerone | Attilio V Vargiu | Francesca Collu | Nadine Fischer | Christian Kandt
Volume: 5
Issue: 6
Year: 2013




Multivariate linear QSPR/QSAR models: Rigorous evaluation of variable selection for PLS
Author(s): Kurt Varmuza | Peter Filzmoser | Matthias Dehmer
Volume: 5
Issue: 6
Year: 2013




Current progress in Structure-Based Rational Drug Design marks a new mindset in drug discovery
Author(s): Valère Lounnas | Tina Ritschel | Jan Kelder | Ross McGuire | Robert P Bywater | Nicolas Foloppe
Volume: 5
Issue: 6
Year: 2013




Methods for Similarity-based Virtual Screening
Author(s): Thomas Greve Kristensen | Jesper Nielsen | Christian Nørgaard Storm Pedersen
Volume: 5
Issue: 6
Year: 2013




Reviewing and identifying amino acids of human, murine, canine and equine TLR4 / MD-2 receptor complexes conferring endotoxic innate immunity activation by LPS/lipid A, or antagonistic effects by Eritoran, in contrast to species-dependent modulation by lipid IVa
Author(s): Thomas Scior | Christian Alexander
Volume: 5
Issue: 6
Year: 2013




Comparison and Enumeration of Chemical Graphs
Author(s): Tatsuya Akutsu | Hiroshi Nagamochi
Volume: 5
Issue: 6
Year: 2013




Fusing similarity rankings in ligand-based virtual screening
Author(s): Peter Willett
Volume: 5
Issue: 6
Year: 2013




Automated detection of structural alerts (chemical fragments) in (eco)toxicology
Author(s): Alban Lepailleur | Guillaume Poezevara | Ronan Bureau
Volume: 5
Issue: 6
Year: 2013




A frequency-based linguistic approach to protein decoding and design: Simple concepts, diverse applications, and the SCS Package
Author(s): Kenta Motomura | Morikazu Nakamura | Joji M. Otaki
Volume: 5
Issue: 6
Year: 2013




Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools
Author(s): Björn Sommer
Volume: 5
Issue: 6
Year: 2013




Analytical Techniques & Applications of Metabolomics in Systems Medicine and Systems Biotechnology
Author(s): Silas G Villas-Boa
Volume: 4
Issue: 5
Year: 2013




Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology
Author(s): Farit M. Afendi | Naoaki Ono | Yukiko Nakamura | Kensuke Nakamura | Latifah K. Darusman | Nelson Kibinge | Aki Hirai Morita | Ken Tanaka | Hisayuki Horai | Md. Altaf-Ul-Amin | Shigehiko Kanaya
Volume: 4
Issue: 5
Year: 2013



